Wall clock time and date at job start Wed Apr 1 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47345 * 240.00436 * 3 2 1 5 5 H 1.48508 * 109.46899 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47070 * 120.00139 * 3 2 1 7 7 C 1.37874 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99901 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99802 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00417 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47491 * 180.02562 * 13 11 10 15 15 C 1.34777 * 117.00167 * 180.02562 * 14 13 11 16 16 O 1.21503 * 119.99892 * 359.97438 * 15 14 13 17 17 C 1.47394 * 119.99704 * 180.27223 * 15 14 13 18 18 C 1.36691 * 126.83224 * 179.43384 * 17 15 14 19 19 C 1.42193 * 103.78202 * 179.87673 * 18 17 15 20 20 C 1.48450 * 126.83495 * 180.13947 * 19 18 17 21 21 C 1.39346 * 120.10136 * 180.33008 * 20 19 18 22 22 C 1.38015 * 119.93015 * 180.02562 * 21 20 19 23 23 C 1.38305 * 120.14168 * 359.97122 * 22 21 20 24 24 C 1.38517 * 120.21881 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.96760 * 180.02562 * 24 23 22 26 26 C 1.38274 * 120.06498 * 359.75713 * 24 23 22 27 27 N 1.30931 * 106.32214 * 0.38622 * 19 18 17 28 28 O 1.20868 * 111.82378 * 359.75461 * 27 19 18 29 29 H 0.97002 * 119.99990 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46835 * 60.00596 * 9 7 2 31 31 H 1.08996 * 109.47132 * 299.99928 * 9 7 2 32 32 H 0.96999 * 120.00408 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.47108 * 59.99544 * 13 11 10 34 34 H 1.09010 * 109.46932 * 299.99887 * 13 11 10 35 35 H 1.07998 * 128.10719 * 359.97438 * 18 17 15 36 36 H 1.07995 * 120.03623 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.92560 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.89065 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.07376 * 180.25565 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5613 -5.1050 -0.0017 13 6 2.7330 -6.0288 -0.0032 14 8 2.0070 -7.2863 -0.0045 15 6 2.7411 -8.4166 -0.0048 16 8 3.9544 -8.3530 -0.0043 17 6 2.0719 -9.7299 -0.0122 18 6 2.6746 -10.9566 -0.0241 19 6 1.5845 -11.8697 -0.0237 20 6 1.6651 -13.3519 -0.0314 21 6 0.4993 -14.1152 -0.0369 22 6 0.5784 -15.4931 -0.0434 23 6 1.8123 -16.1179 -0.0452 24 6 2.9750 -15.3651 -0.0398 25 9 4.1775 -15.9807 -0.0421 26 6 2.9060 -13.9841 -0.0378 27 7 0.4956 -11.1426 -0.0207 28 8 0.7450 -9.9600 -0.0144 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 3.1567 -3.4354 -0.0028 33 1 3.3597 -5.9716 0.8867 34 1 3.3597 -5.9706 -0.8933 35 1 3.7312 -11.1801 -0.0306 36 1 -0.4650 -13.6291 -0.0360 37 1 -0.3252 -16.0846 -0.0473 38 1 1.8694 -17.1964 -0.0507 39 1 3.8125 -13.3969 -0.0378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051312911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:28 Heat of formation + Delta-G solvation = -92.445161 kcal Electronic energy + Delta-G solvation = -27517.069290 eV Core-core repulsion = 22921.368631 eV Total energy + Delta-G solvation = -4595.700659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.95496 -46.29600 -41.81864 -40.38113 -40.09712 -37.85596 -36.17984 -35.74176 -34.40933 -33.61764 -31.97927 -31.33554 -30.83319 -28.64845 -26.09350 -25.57248 -24.57085 -23.84667 -23.35098 -21.68976 -21.64986 -20.16583 -19.18872 -19.13236 -18.41597 -18.16092 -17.82421 -17.72536 -17.32348 -17.23473 -16.96502 -16.72259 -16.65254 -16.20292 -16.06429 -15.54016 -14.84041 -14.80249 -14.58414 -14.57010 -14.31658 -14.12183 -13.89353 -13.85420 -13.70440 -13.16025 -12.94670 -12.80898 -12.67113 -12.27468 -12.22992 -12.22087 -12.04641 -12.03146 -11.50917 -11.18250 -10.92836 -10.79174 -10.01759 -9.91701 -9.72502 -8.27875 -6.44589 -0.73714 -0.39746 0.09032 0.74130 1.03656 1.35873 1.45749 1.49252 1.56694 1.57267 1.63560 2.32956 2.46159 2.54233 2.56255 3.07542 3.08292 3.25476 3.51438 3.61595 3.70938 3.78586 3.84062 4.00994 4.03872 4.06031 4.11344 4.27435 4.48024 4.72667 4.83185 4.94602 5.00632 5.10716 5.19477 5.23808 5.27569 5.43066 5.64019 5.74597 5.83597 6.12052 6.64419 6.71691 6.78792 7.22401 7.37880 8.83895 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.038949 B = 0.001455 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.719836 B =19233.455024 C =19931.675266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.497 3.503 12 O -0.585 6.585 13 C 0.061 3.939 14 O -0.336 6.336 15 C 0.565 3.435 16 O -0.480 6.480 17 C -0.069 4.069 18 C -0.107 4.107 19 C 0.052 3.948 20 C -0.012 4.012 21 C -0.108 4.108 22 C -0.083 4.083 23 C -0.134 4.134 24 C 0.087 3.913 25 F -0.142 7.142 26 C -0.128 4.128 27 N -0.341 5.341 28 O 0.127 5.873 29 H 0.269 0.731 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.414 0.586 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.222 0.778 36 H 0.136 0.864 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 -33.024 -0.100 34.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.283 3.717 12 O -0.465 6.465 13 C -0.015 4.015 14 O -0.250 6.250 15 C 0.407 3.593 16 O -0.367 6.367 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.103 4.103 20 C -0.013 4.013 21 C -0.127 4.127 22 C -0.101 4.101 23 C -0.153 4.153 24 C 0.067 3.933 25 F -0.120 7.120 26 C -0.148 4.148 27 N -0.039 5.039 28 O 0.050 5.950 29 H 0.077 0.923 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.251 0.749 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.239 0.761 36 H 0.154 0.846 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.728 -33.286 -0.103 34.171 hybrid contribution 1.180 1.243 0.005 1.714 sum 8.907 -32.043 -0.098 33.258 Atomic orbital electron populations 1.70128 1.08272 1.28641 1.49831 1.26041 0.95733 1.03854 0.93854 0.85210 0.77879 0.76650 0.79496 1.18650 1.21327 1.18660 1.21597 0.94490 0.90364 1.53080 0.89425 1.18631 0.88613 0.83823 0.94618 1.46004 1.11772 1.04582 1.72453 1.20698 0.89295 0.84788 0.76906 1.90719 1.19079 1.85287 1.51433 1.22975 0.92458 0.77707 1.08403 1.86665 1.40628 1.14573 1.83168 1.19051 0.84507 0.82451 0.73282 1.90946 1.13016 1.86886 1.45870 1.22697 0.84362 0.94099 1.12100 1.23290 1.03200 0.87367 0.98921 1.22146 0.88258 0.95931 1.04005 1.17387 0.94254 0.86213 1.03479 1.21497 0.97959 0.94822 0.98451 1.21297 0.98557 0.93471 0.96726 1.21657 0.90875 1.02344 1.00450 1.17645 0.81123 0.90605 1.03878 1.91523 1.43453 1.83030 1.94035 1.21190 0.98408 0.93361 1.01879 1.74079 1.24304 0.89183 1.16302 1.85130 1.23603 1.19823 1.66494 0.92266 0.98982 0.98968 0.74928 0.84478 0.84486 0.76095 0.84648 0.81407 0.81950 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 2 C 0.01 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.98 41.30 29.54 68.60 2.03 43.32 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.56 -29.27 9.28 25.60 0.24 -29.03 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.07 5.43 85.64 0.46 14.54 16 10 N -0.70 -27.47 5.55 -466.78 -2.59 -30.06 16 11 C 0.50 19.01 7.91 87.65 0.69 19.70 16 12 O -0.58 -28.97 16.50 15.75 0.26 -28.71 16 13 C 0.06 1.54 5.95 71.23 0.42 1.97 16 14 O -0.34 -9.66 9.77 -50.16 -0.49 -10.15 16 15 C 0.57 13.35 7.96 70.23 0.56 13.91 16 16 O -0.48 -11.26 16.70 19.82 0.33 -10.93 16 17 C -0.07 -1.48 7.36 24.32 0.18 -1.31 16 18 C -0.11 -1.69 10.30 22.89 0.24 -1.46 16 19 C 0.05 0.94 7.05 42.98 0.30 1.24 16 20 C -0.01 -0.18 5.88 -20.04 -0.12 -0.30 16 21 C -0.11 -1.35 9.70 22.48 0.22 -1.13 16 22 C -0.08 -0.64 10.03 22.23 0.22 -0.42 16 23 C -0.13 -1.10 10.02 22.35 0.22 -0.88 16 24 C 0.09 1.02 7.29 22.34 0.16 1.18 16 25 F -0.14 -1.95 17.26 44.97 0.78 -1.17 16 26 C -0.13 -1.51 9.58 22.52 0.22 -1.30 16 27 N -0.34 -7.84 11.78 -48.89 -0.58 -8.42 16 28 O 0.13 3.17 11.21 65.57 0.73 3.91 16 29 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.41 12.75 8.32 -92.71 -0.77 11.98 16 33 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.22 1.92 7.57 -2.91 -0.02 1.90 16 36 H 0.14 1.74 7.89 -2.91 -0.02 1.71 16 37 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 38 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 39 H 0.16 1.24 7.22 -2.91 -0.02 1.22 16 Total: -1.00 -75.83 367.68 5.61 -70.23 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.37 Total: 9.43 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 4.48 Total: 17.46 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -2.88 Total: -93.39 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: 0.84 Total: -45.88 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -75.83 5.61 -70.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051312911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.220 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds