Wall clock time and date at job start Wed Apr 1 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46996 * 2 1 4 4 C 1.38519 * 120.61505 * 95.00010 * 3 2 1 5 5 O 1.35369 * 120.08014 * 0.25875 * 4 3 2 6 6 N 1.33564 * 119.83454 * 179.97438 * 4 3 2 7 7 C 1.31709 * 121.21568 * 0.02562 * 6 4 3 8 8 S 1.76204 * 119.34972 * 179.97438 * 7 6 4 9 9 C 1.76194 * 100.00010 * 0.02562 * 8 7 6 10 10 H 1.08010 * 120.00072 * 359.97438 * 9 8 7 11 11 C 1.38850 * 120.00040 * 179.97438 * 9 8 7 12 12 N 1.31492 * 119.99874 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 119.99971 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47241 * 89.99894 * 13 11 9 15 15 H 1.48506 * 109.47379 * 209.99797 * 13 11 9 16 16 H 1.48501 * 109.47292 * 330.00144 * 13 11 9 17 17 N 1.36418 * 121.29886 * 359.97148 * 7 6 4 18 18 C 1.40192 * 119.97524 * 180.02562 * 17 7 6 19 19 C 1.38741 * 120.08914 * 89.72504 * 18 17 7 20 20 C 1.38179 * 119.98099 * 179.74642 * 19 18 17 21 21 C 1.38302 * 120.16862 * 0.53212 * 20 19 18 22 22 C 1.38221 * 120.18089 * 359.74151 * 21 20 19 23 23 C 1.38570 * 120.01690 * 359.97438 * 22 21 20 24 24 O 1.35953 * 120.08475 * 180.02562 * 23 22 21 25 25 C 1.42902 * 116.99985 * 359.97438 * 24 23 22 26 26 C 1.34958 * 120.04949 * 0.04850 * 17 7 6 27 27 O 1.22081 * 120.58359 * 179.97438 * 26 17 7 28 28 H 1.08991 * 109.47213 * 60.00062 * 1 2 3 29 29 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47115 * 299.99440 * 1 2 3 31 31 H 1.09004 * 109.47292 * 239.99973 * 2 1 3 32 32 H 1.09003 * 109.47556 * 119.99860 * 2 1 3 33 33 H 0.96701 * 114.00051 * 179.72723 * 5 4 3 34 34 H 0.97006 * 119.99628 * 180.02562 * 12 11 9 35 35 H 1.07991 * 120.00706 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.91180 * 180.25903 * 20 19 18 37 37 H 1.07993 * 119.90663 * 179.76707 * 21 20 19 38 38 H 1.08002 * 119.98622 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46809 * 179.97438 * 25 24 23 40 40 H 1.09001 * 109.46393 * 299.99734 * 25 24 23 41 41 H 1.08994 * 109.47258 * 59.99667 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3654 2.0513 1.1876 5 8 2.2465 1.3906 2.3631 6 7 2.8095 3.3108 1.1694 7 6 2.9386 3.9728 0.0381 8 16 3.5285 5.6328 0.0714 9 6 3.7633 5.8394 1.8053 10 1 3.5388 5.0274 2.4813 11 6 4.2369 7.0461 2.3029 12 7 4.4116 7.2004 3.5970 13 14 4.6258 8.4502 1.1339 14 1 3.4141 9.2880 0.9461 15 1 5.7179 9.2801 1.7030 16 1 5.0544 7.8989 -0.1767 17 7 2.6246 3.3986 -1.1588 18 6 2.7731 4.1288 -2.3463 19 6 3.9760 4.0966 -3.0369 20 6 4.1183 4.8129 -4.2099 21 6 3.0675 5.5716 -4.6927 22 6 1.8680 5.6132 -4.0073 23 6 1.7151 4.8931 -2.8333 24 8 0.5356 4.9325 -2.1583 25 6 -0.5046 5.7379 -2.7164 26 6 2.1706 2.1284 -1.2006 27 8 1.8863 1.6051 -2.2663 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.5063 1.9116 3.1351 34 1 4.7421 8.0436 3.9446 35 1 4.7995 3.5082 -2.6600 36 1 5.0537 4.7837 -4.7487 37 1 3.1846 6.1328 -5.6079 38 1 1.0497 6.2070 -4.3869 39 1 -1.3887 5.6806 -2.0814 40 1 -0.1685 6.7728 -2.7795 41 1 -0.7501 5.3741 -3.7141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068274910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:09 Heat of formation + Delta-G solvation = -47.577019 kcal Electronic energy + Delta-G solvation = -29022.537908 eV Core-core repulsion = 24994.996053 eV Total energy + Delta-G solvation = -4027.541854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46541 -39.82593 -38.11627 -37.30404 -36.43436 -34.30550 -33.05783 -32.82503 -30.31679 -29.71080 -28.78428 -27.26070 -26.10138 -24.81225 -23.81920 -22.26339 -22.16883 -21.25494 -19.51262 -18.58375 -17.93619 -17.33287 -17.14182 -16.50356 -15.82731 -15.65566 -15.30700 -15.24845 -14.92085 -14.38295 -14.30623 -13.99341 -13.88042 -13.36623 -13.33036 -13.23072 -13.00498 -12.66411 -12.37175 -12.19486 -12.00774 -11.79330 -11.66899 -11.46787 -11.37995 -11.27006 -11.12502 -11.09034 -10.55767 -10.37619 -9.61610 -9.53158 -9.45952 -9.37550 -9.29640 -8.85860 -8.24630 -8.16821 -7.19252 -6.68933 -4.50213 1.14983 1.16414 1.42315 1.91502 2.53836 2.92788 2.96824 3.02886 3.10518 3.27249 3.66789 3.83176 3.90463 4.12935 4.25919 4.72232 4.77252 4.84092 5.05421 5.06630 5.14172 5.21098 5.34607 5.43365 5.46396 5.50382 5.56303 5.66596 5.84795 5.93608 6.09087 6.15423 6.24609 6.32642 6.41113 6.49385 6.55916 6.71271 6.74475 6.78697 7.15819 7.37859 7.56286 7.66780 8.31024 8.45980 8.54418 8.68590 10.38413 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.006143 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.934372 B = 4556.985220 C = 6728.557017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C -0.355 4.355 4 C 0.406 3.594 5 O -0.453 6.453 6 N -0.580 5.580 7 C 0.385 3.615 8 S 0.116 5.884 9 C -0.536 4.536 10 H 0.132 0.868 11 C 0.105 3.895 12 N -0.846 5.846 13 Si 0.837 3.163 14 H -0.259 1.259 15 H -0.260 1.260 16 H -0.237 1.237 17 N -0.475 5.475 18 C 0.082 3.918 19 C -0.053 4.053 20 C -0.151 4.151 21 C -0.067 4.067 22 C -0.207 4.207 23 C 0.157 3.843 24 O -0.304 6.304 25 C 0.027 3.973 26 C 0.556 3.444 27 O -0.550 6.550 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.279 0.721 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -1.188 -11.694 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.367 4.367 4 C 0.232 3.768 5 O -0.251 6.251 6 N -0.320 5.320 7 C 0.022 3.978 8 S 0.358 5.642 9 C -0.684 4.684 10 H 0.149 0.851 11 C -0.108 4.108 12 N -0.479 5.479 13 Si 0.660 3.340 14 H -0.184 1.184 15 H -0.185 1.185 16 H -0.161 1.161 17 N -0.196 5.196 18 C -0.009 4.009 19 C -0.072 4.072 20 C -0.170 4.170 21 C -0.085 4.085 22 C -0.226 4.226 23 C 0.109 3.891 24 O -0.216 6.216 25 C -0.068 4.068 26 C 0.359 3.641 27 O -0.432 6.432 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.701 -0.848 -12.357 12.927 hybrid contribution -0.136 0.175 0.550 0.593 sum -3.836 -0.673 -11.807 12.433 Atomic orbital electron populations 1.21694 0.96330 1.00265 1.01428 1.19634 0.94803 0.90789 1.01343 1.20117 1.26468 1.01384 0.88781 1.19687 0.85114 0.86222 0.85791 1.84963 1.82414 1.42212 1.15501 1.68666 1.30651 1.08688 1.24030 1.25378 0.90962 1.00360 0.81123 1.83331 1.68146 0.97747 1.14949 1.22918 1.51343 1.05529 0.88566 0.85051 1.24748 0.93366 0.97532 0.95150 1.69824 1.40293 1.26287 1.11496 0.87100 0.80457 0.83813 0.82590 1.18380 1.18461 1.16117 1.44016 1.56899 1.13807 1.04838 1.16908 0.93873 0.99943 0.90209 1.21066 0.95136 0.97024 0.93966 1.20897 0.99793 0.99615 0.96701 1.21005 0.92092 0.96734 0.98719 1.21107 1.00309 1.04744 0.96470 1.19061 0.85404 0.93699 0.90916 1.86199 1.20114 1.66056 1.49261 1.23103 0.89495 0.94488 0.99699 1.16344 0.78114 0.79148 0.90503 1.90854 1.53567 1.67222 1.31534 0.93067 0.93475 0.93330 0.91932 0.91690 0.73835 0.91051 0.84841 0.85020 0.85275 0.84776 0.88146 0.92277 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.89 16 2 C -0.03 -0.48 5.68 -27.88 -0.16 -0.64 16 3 C -0.35 -7.23 5.21 -103.84 -0.54 -7.77 16 4 C 0.41 8.14 7.85 -16.69 -0.13 8.01 16 5 O -0.45 -7.61 12.57 -17.80 -0.22 -7.83 16 6 N -0.58 -12.74 8.36 -12.86 -0.11 -12.85 16 7 C 0.38 8.40 7.75 -88.09 -0.68 7.71 16 8 S 0.12 2.54 18.39 -107.50 -1.98 0.56 16 9 C -0.54 -13.70 9.79 30.96 0.30 -13.40 16 10 H 0.13 3.65 6.75 -52.48 -0.35 3.29 16 11 C 0.10 2.67 5.50 -17.47 -0.10 2.57 16 12 N -0.85 -22.60 13.96 55.49 0.77 -21.82 16 13 Si 0.84 17.87 27.74 -169.99 -4.71 13.16 16 14 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.24 -4.80 6.74 56.52 0.38 -4.42 16 17 N -0.47 -9.87 2.41 -63.28 -0.15 -10.03 16 18 C 0.08 1.52 3.20 -83.45 -0.27 1.25 16 19 C -0.05 -0.83 9.96 -39.42 -0.39 -1.23 16 20 C -0.15 -1.89 10.04 -39.58 -0.40 -2.29 16 21 C -0.07 -0.78 10.04 -39.56 -0.40 -1.17 16 22 C -0.21 -2.71 9.03 -39.47 -0.36 -3.06 16 23 C 0.16 2.65 6.70 -39.06 -0.26 2.39 16 24 O -0.30 -5.22 10.24 -19.59 -0.20 -5.42 16 25 C 0.03 0.31 9.81 101.05 0.99 1.30 16 26 C 0.56 12.12 7.37 -15.50 -0.11 12.00 16 27 O -0.55 -12.81 16.40 4.84 0.08 -12.74 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.12 7.80 -51.93 -0.40 0.72 16 32 H 0.06 1.07 7.43 -51.93 -0.39 0.68 16 33 H 0.41 5.55 8.98 45.56 0.41 5.96 16 34 H 0.28 6.84 8.31 -40.82 -0.34 6.51 16 35 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 41 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -31.91 366.50 -7.11 -39.02 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.98 Total: 8.64 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.13 Total: 3.78 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.51 Total: -44.70 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.34 Total: -25.99 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -4.71 Total: 13.16 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.98 Total: 0.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.91 -7.11 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068274910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.552 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds