Wall clock time and date at job start Wed Apr 1 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47031 * 239.99925 * 3 2 1 5 5 H 1.48496 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46695 * 120.00196 * 3 2 1 7 7 C 1.38988 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00026 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.36511 * 126.07299 * 180.02562 * 9 7 2 11 11 C 1.35668 * 107.51097 * 180.02562 * 10 9 7 12 12 N 1.40602 * 126.08198 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99566 * 145.37110 * 12 11 10 14 14 S 1.71194 * 120.00229 * 354.62262 * 13 12 11 15 15 N 1.34777 * 119.99563 * 174.62721 * 13 12 11 16 16 C 1.46503 * 119.99944 * 179.72513 * 15 13 12 17 17 C 1.53000 * 109.47362 * 179.97438 * 16 15 13 18 18 S 1.81399 * 109.47166 * 179.97438 * 17 16 15 19 19 C 1.76202 * 102.99952 * 180.02562 * 18 17 16 20 20 C 1.38965 * 120.07840 * 359.72034 * 19 18 17 21 21 C 1.38091 * 119.91836 * 179.76552 * 20 19 18 22 22 C 1.38307 * 120.07620 * 0.49405 * 21 20 19 23 23 C 1.38302 * 120.15870 * 359.76218 * 22 21 20 24 24 C 1.38074 * 120.08563 * 0.02562 * 23 22 21 25 25 C 1.40661 * 107.83718 * 0.26131 * 11 10 9 26 26 N 1.30912 * 108.38863 * 359.55530 * 25 11 10 27 27 H 0.97004 * 119.99807 * 359.97438 * 1 2 3 28 28 H 1.08005 * 126.24211 * 0.03819 * 10 9 7 29 29 H 0.96993 * 120.00657 * 325.38072 * 12 11 10 30 30 H 0.97003 * 120.00328 * 359.97438 * 15 13 12 31 31 H 1.08999 * 109.47253 * 299.99916 * 16 15 13 32 32 H 1.09005 * 109.46870 * 59.99300 * 16 15 13 33 33 H 1.08996 * 109.47212 * 299.99856 * 17 16 15 34 34 H 1.09002 * 109.46839 * 59.99948 * 17 16 15 35 35 H 1.08006 * 120.04347 * 0.02562 * 20 19 18 36 36 H 1.07999 * 119.95835 * 180.23189 * 21 20 19 37 37 H 1.07996 * 119.91285 * 179.73837 * 22 21 20 38 38 H 1.08001 * 119.95550 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.04283 * 179.97438 * 24 23 22 40 40 H 1.07999 * 125.80306 * 179.71888 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2124 5 1 1.2821 2.7464 0.0006 6 1 3.1008 1.6962 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6407 -0.0005 11 6 0.8578 -4.5385 -0.0011 12 7 0.9890 -5.9384 -0.0018 13 6 0.0955 -6.6993 0.6610 14 16 -1.1173 -5.9593 1.6162 15 7 0.1569 -8.0427 0.5718 16 6 -0.8106 -8.8699 1.2971 17 6 -0.5220 -10.3479 1.0266 18 16 -1.7194 -11.3722 1.9253 19 6 -1.2364 -13.0123 1.4996 20 6 -0.1582 -13.2221 0.6483 21 6 0.2205 -14.5090 0.3207 22 6 -0.4781 -15.5882 0.8307 23 6 -1.5549 -15.3830 1.6740 24 6 -1.9366 -14.0992 2.0094 25 6 -0.3513 -3.8198 -0.0076 26 7 -0.0717 -2.5410 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 2.9301 -3.8711 0.0000 29 1 1.7225 -6.3566 -0.4791 30 1 0.8439 -8.4620 0.0304 31 1 -0.7280 -8.6729 2.3660 32 1 -1.8190 -8.6293 0.9602 33 1 -0.6049 -10.5446 -0.0422 34 1 0.4865 -10.5886 1.3632 35 1 0.3855 -12.3797 0.2466 36 1 1.0607 -14.6728 -0.3379 37 1 -0.1822 -16.5934 0.5694 38 1 -2.0984 -16.2281 2.0701 39 1 -2.7778 -13.9397 2.6677 40 1 -1.3420 -4.2500 -0.0139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145462855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:42 Heat of formation + Delta-G solvation = 112.862869 kcal Electronic energy + Delta-G solvation = -23176.153478 eV Core-core repulsion = 19630.614441 eV Total energy + Delta-G solvation = -3545.539037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60157 -39.82652 -39.77837 -36.82808 -35.19505 -32.65899 -32.19613 -31.89212 -31.60330 -29.43959 -26.83018 -25.20854 -24.71474 -23.62878 -23.18479 -22.56606 -21.61706 -19.91322 -19.19252 -18.66046 -18.00335 -17.40430 -17.18554 -16.80390 -16.48072 -16.28435 -15.96630 -15.61026 -15.48590 -15.32184 -14.95002 -14.63776 -14.42663 -14.20883 -13.99005 -13.48460 -13.44587 -13.29402 -12.92127 -12.78977 -12.70667 -12.40657 -12.14725 -12.12689 -12.05410 -11.37746 -11.21287 -10.91465 -10.72906 -10.56121 -10.10937 -9.94322 -9.15619 -8.65813 -8.44530 -8.43535 -8.28227 -6.22028 0.21900 0.24532 0.31628 0.41311 1.03199 1.33436 1.34874 1.40825 1.57036 1.65233 1.81754 2.16540 2.46367 2.64462 2.76793 3.02182 3.11307 3.44520 3.75157 3.91689 4.00327 4.22034 4.27284 4.42100 4.50631 4.53812 4.57059 4.58726 4.71310 4.79628 4.88407 5.00577 5.06282 5.08705 5.29786 5.31116 5.45337 5.56028 5.57184 5.93710 5.98050 6.00880 6.35232 6.52386 6.79081 7.45802 7.69161 8.53812 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.042859 B = 0.001590 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.142363 B =17602.436907 C =18104.905658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.356 4.356 8 H 0.141 0.859 9 N -0.168 5.168 10 C -0.054 4.054 11 C -0.070 4.070 12 N -0.553 5.553 13 C 0.580 3.420 14 S -0.743 6.743 15 N -0.661 5.661 16 C 0.152 3.848 17 C -0.113 4.113 18 S -0.117 6.117 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.107 4.107 22 C -0.131 4.131 23 C -0.106 4.106 24 C -0.119 4.119 25 C 0.011 3.989 26 N -0.314 5.314 27 H 0.276 0.724 28 H 0.187 0.813 29 H 0.421 0.579 30 H 0.419 0.581 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -30.168 -2.329 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.487 4.487 8 H 0.158 0.842 9 N 0.067 4.933 10 C -0.207 4.207 11 C -0.177 4.177 12 N -0.175 5.175 13 C 0.215 3.785 14 S -0.618 6.618 15 N -0.294 5.294 16 C 0.027 3.973 17 C -0.262 4.262 18 S 0.127 5.873 19 C -0.212 4.212 20 C -0.169 4.169 21 C -0.126 4.126 22 C -0.151 4.151 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.168 4.168 26 N -0.143 5.143 27 H 0.086 0.914 28 H 0.204 0.796 29 H 0.261 0.739 30 H 0.260 0.740 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.147 0.853 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.542 -27.786 -0.958 28.028 hybrid contribution 2.242 -1.119 -1.388 2.865 sum 5.784 -28.906 -2.346 29.572 Atomic orbital electron populations 1.70393 1.08370 1.29157 1.36944 1.26849 0.96430 1.04271 0.94096 0.84683 0.77577 0.73920 0.80222 1.17477 1.20397 1.18038 1.20567 0.92948 0.80909 1.54257 0.84158 1.44845 1.03790 1.04667 1.40047 1.22023 0.98739 0.84326 1.15611 1.16767 0.93049 0.81018 1.26905 1.41032 1.26454 1.03713 1.46294 1.21432 0.88480 0.84601 0.83965 1.93672 1.37763 1.78134 1.52222 1.44409 1.34364 1.01010 1.49643 1.21068 0.92521 0.86036 0.97698 1.23733 1.02620 0.94879 1.04959 1.85945 1.42571 0.96400 1.62429 1.21898 1.00376 0.96514 1.02379 1.21449 0.97047 0.99166 0.99201 1.21430 1.00027 0.91862 0.99331 1.21578 0.95753 1.00263 0.97497 1.21415 0.97215 0.96510 0.97460 1.20992 1.00309 0.91927 1.01011 1.24017 0.98812 0.90657 1.03332 1.78257 0.91731 1.16438 1.27854 0.91406 0.79622 0.73859 0.74007 0.90259 0.90212 0.86644 0.86593 0.84459 0.83535 0.83502 0.83490 0.85327 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.43 11.81 21.66 0.26 -47.17 16 2 C 0.00 -0.22 5.50 84.95 0.47 0.24 16 3 Si 1.02 38.44 29.55 68.60 2.03 40.47 16 4 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.36 -18.59 10.25 84.01 0.86 -17.72 16 8 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 9 N -0.17 -9.09 3.74 -190.01 -0.71 -9.80 16 10 C -0.05 -2.39 11.49 83.37 0.96 -1.43 16 11 C -0.07 -3.01 6.37 37.73 0.24 -2.77 16 12 N -0.55 -16.66 5.47 -190.41 -1.04 -17.70 16 13 C 0.58 17.97 7.91 179.05 1.42 19.39 16 14 S -0.74 -33.25 25.08 -56.49 -1.42 -34.67 16 15 N -0.66 -12.36 5.56 -350.15 -1.95 -14.31 16 16 C 0.15 2.90 5.14 86.38 0.44 3.35 16 17 C -0.11 -1.34 4.45 71.98 0.32 -1.02 16 18 S -0.12 -2.00 21.92 -56.49 -1.24 -3.23 16 19 C -0.10 -1.56 6.11 22.62 0.14 -1.42 16 20 C -0.14 -1.80 9.36 22.41 0.21 -1.59 16 21 C -0.11 -1.08 10.04 22.25 0.22 -0.86 16 22 C -0.13 -1.26 10.04 22.30 0.22 -1.03 16 23 C -0.11 -1.18 10.04 22.25 0.22 -0.96 16 24 C -0.12 -1.75 9.79 22.41 0.22 -1.54 16 25 C 0.01 0.59 10.01 85.42 0.86 1.44 16 26 N -0.31 -18.63 10.40 -56.46 -0.59 -19.22 16 27 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.19 6.38 8.06 -2.91 -0.02 6.36 16 29 H 0.42 8.21 8.84 -92.71 -0.82 7.39 16 30 H 0.42 3.90 8.49 -92.71 -0.79 3.11 16 31 H 0.08 1.87 8.00 -2.39 -0.02 1.85 16 32 H 0.08 1.89 7.99 -2.38 -0.02 1.87 16 33 H 0.12 0.96 7.74 -2.39 -0.02 0.94 16 34 H 0.12 0.94 7.76 -2.39 -0.02 0.93 16 35 H 0.14 1.15 5.88 -2.91 -0.02 1.14 16 36 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.16 8.74 6.42 -3.31 -0.02 8.71 16 Total: -1.00 -82.86 368.91 1.63 -81.23 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.51 Total: 30.33 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.80 Total: -5.91 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.03 Total: -108.21 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: -35.25 SS G_CDS: -2.66 Total: -37.90 kcal Total: -82.86 1.63 -81.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145462855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.096 kcal (2) G-P(sol) polarization free energy of solvation -82.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds