Wall clock time and date at job start Wed Apr 1 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39312 * 119.05498 * 2 1 4 4 C 1.38864 * 119.57401 * 179.72334 * 3 2 1 5 5 C 1.47903 * 121.10716 * 180.29314 * 4 3 2 6 6 O 1.21543 * 119.99589 * 174.14523 * 5 4 3 7 7 N 1.34777 * 120.00221 * 354.14807 * 5 4 3 8 8 S 1.65605 * 119.99666 * 179.97438 * 7 5 4 9 9 O 1.42101 * 104.27371 * 181.07094 * 8 7 5 10 10 O 1.42097 * 104.28034 * 308.93002 * 8 7 5 11 11 C 1.81398 * 104.44761 * 65.00186 * 8 7 5 12 12 C 1.53004 * 109.47181 * 179.97438 * 11 8 7 13 13 C 1.50695 * 109.47513 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99853 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00400 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00285 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46657 * 90.00335 * 17 15 13 19 19 H 1.48492 * 109.47350 * 209.99979 * 17 15 13 20 20 H 1.48503 * 109.47075 * 330.00625 * 17 15 13 21 21 C 1.41817 * 117.77819 * 0.27656 * 4 3 2 22 22 C 1.40092 * 121.36894 * 179.97438 * 21 4 3 23 23 C 1.36257 * 119.64438 * 179.97438 * 22 21 4 24 24 C 1.39338 * 120.83198 * 0.08141 * 23 22 21 25 25 C 1.36070 * 121.05363 * 359.93426 * 24 23 22 26 26 C 1.40699 * 119.73999 * 0.02562 * 25 24 23 27 27 N 1.30965 * 119.05721 * 180.31782 * 2 1 3 28 28 H 1.08997 * 109.47363 * 90.01005 * 1 2 3 29 29 H 1.09004 * 109.47070 * 210.00321 * 1 2 3 30 30 H 1.08998 * 109.47278 * 330.00164 * 1 2 3 31 31 H 1.07998 * 120.21633 * 359.97438 * 3 2 1 32 32 H 0.96991 * 119.99980 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47317 * 299.99695 * 11 8 7 34 34 H 1.08998 * 109.47253 * 59.99892 * 11 8 7 35 35 H 1.09005 * 109.46951 * 300.00170 * 12 11 8 36 36 H 1.08998 * 109.46910 * 59.99934 * 12 11 8 37 37 H 0.97001 * 120.00279 * 179.97438 * 16 15 13 38 38 H 1.07997 * 120.17851 * 0.02562 * 22 21 4 39 39 H 1.08001 * 119.58490 * 180.02562 * 23 22 21 40 40 H 1.08009 * 119.47437 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.12608 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5722 1.2304 0.0058 5 6 4.3248 2.5036 0.0125 6 8 5.5349 2.4935 0.1249 7 7 3.6687 3.6749 -0.1060 8 16 4.5114 5.1005 -0.0979 9 8 3.5089 6.1008 -0.2142 10 8 5.3315 5.0162 1.0595 11 6 5.5240 5.0362 -1.6015 12 6 6.3588 6.3138 -1.7093 13 6 7.2006 6.2602 -2.9581 14 1 7.1453 5.4009 -3.6101 15 6 8.0404 7.3085 -3.2690 16 7 8.1074 8.3550 -2.4754 17 14 9.0843 7.2417 -4.8166 18 1 8.3294 7.8363 -5.9488 19 1 10.3383 8.0074 -4.6014 20 1 9.4149 5.8283 -5.1301 21 6 4.2445 -0.0183 0.0055 22 6 5.6434 -0.0934 0.0107 23 6 6.2529 -1.3120 0.0107 24 6 5.5023 -2.4859 0.0041 25 6 4.1421 -2.4493 -0.0013 26 6 3.4772 -1.2093 -0.0008 27 7 2.1431 -1.1448 -0.0064 28 1 -0.3634 -0.0002 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6317 2.1461 -0.0004 32 1 2.7030 3.6829 -0.1960 33 1 6.1864 4.1716 -1.5569 34 1 4.8751 4.9520 -2.4733 35 1 5.6961 7.1781 -1.7541 36 1 7.0077 6.3984 -0.8376 37 1 8.6985 9.0924 -2.6938 38 1 6.2355 0.8098 0.0154 39 1 7.3314 -1.3687 0.0151 40 1 6.0082 -3.4402 0.0038 41 1 3.5751 -3.3685 -0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185321048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:02 Heat of formation + Delta-G solvation = -54.501296 kcal Electronic energy + Delta-G solvation = -27619.548522 eV Core-core repulsion = 23591.706408 eV Total energy + Delta-G solvation = -4027.842114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58543 -39.84618 -37.72599 -36.82305 -35.73835 -34.84873 -33.95334 -33.71062 -32.38212 -31.23842 -30.33763 -28.15426 -25.73014 -25.38467 -23.70388 -22.79468 -21.75644 -21.47684 -19.59967 -18.47957 -18.20957 -17.90291 -17.31654 -16.56171 -16.01380 -15.90723 -15.40131 -15.30717 -15.14939 -15.05604 -14.73509 -14.58212 -14.10693 -13.69298 -13.55544 -13.43307 -13.37570 -12.68749 -12.58729 -12.45343 -11.90107 -11.87569 -11.81916 -11.73080 -11.70839 -11.68797 -11.15593 -11.09593 -11.02479 -10.85760 -10.77728 -10.45371 -10.40453 -9.79779 -9.68834 -9.23906 -9.05175 -8.56439 -8.53114 -6.15434 -4.21184 -0.33343 0.35810 0.42554 1.32127 2.24599 2.50411 2.66005 3.24976 3.31375 3.34509 3.66746 3.72982 3.75990 3.95674 4.13766 4.29511 4.34762 4.46596 4.50598 4.62971 4.76671 4.80883 4.98241 5.02657 5.08793 5.19494 5.19996 5.31052 5.36728 5.51459 5.55417 5.63757 5.73454 5.83715 6.02468 6.15565 6.25450 6.37018 6.44292 6.56954 7.20647 7.23837 7.29655 7.49125 7.77476 8.12467 8.81745 9.43688 10.95632 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.002960 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.103859 B = 9457.033726 C =10703.330747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.150 3.850 3 C -0.126 4.126 4 C -0.074 4.074 5 C 0.586 3.414 6 O -0.473 6.473 7 N -1.052 6.052 8 S 2.562 3.438 9 O -0.949 6.949 10 O -0.933 6.933 11 C -0.574 4.574 12 C 0.030 3.970 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.067 4.067 22 C -0.102 4.102 23 C -0.113 4.113 24 C -0.094 4.094 25 C -0.099 4.099 26 C 0.130 3.870 27 N -0.454 5.454 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.428 0.572 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.170 0.830 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 -20.785 4.638 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.002 4.002 3 C -0.147 4.147 4 C -0.086 4.086 5 C 0.373 3.627 6 O -0.345 6.345 7 N -0.813 5.813 8 S 2.663 3.337 9 O -0.940 6.940 10 O -0.923 6.923 11 C -0.709 4.709 12 C -0.009 4.009 13 C -0.560 4.560 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.729 3.271 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.070 4.070 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.114 4.114 25 C -0.118 4.118 26 C 0.008 3.992 27 N -0.164 5.164 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.264 0.736 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.187 0.813 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.417 -20.812 5.475 25.360 hybrid contribution 0.605 0.507 -1.387 1.596 sum -12.812 -20.305 4.088 24.355 Atomic orbital electron populations 1.20818 0.87804 1.04099 1.03724 1.21414 0.97438 0.87430 0.93940 1.22310 0.93314 1.00201 0.98886 1.20199 0.93817 0.92783 1.01831 1.17964 0.87049 0.83528 0.74186 1.90817 1.12797 1.86238 1.44647 1.55453 1.22273 1.23881 1.79664 1.06908 0.75510 0.72075 0.79226 1.93602 1.57968 1.54148 1.88247 1.93609 1.68811 1.83887 1.46032 1.30347 1.13127 1.11814 1.15571 1.19005 0.94512 0.87344 1.00087 1.20964 1.23804 1.04293 1.06905 0.91932 1.25060 0.96884 0.95239 0.97237 1.69949 1.38216 1.07428 1.37192 0.86443 0.79701 0.78268 0.82732 1.20444 1.20956 1.19695 1.18651 0.95264 0.91848 1.01191 1.22061 0.93210 1.00796 0.95976 1.21155 1.00888 0.92101 0.98974 1.21038 0.93717 0.99020 0.97652 1.20766 0.94253 0.95965 1.00821 1.18828 0.88645 0.92951 0.98784 1.67637 1.08873 1.28811 1.11045 0.89742 0.89978 0.90105 0.83631 0.73632 0.84957 0.85869 0.94692 0.94492 0.92461 0.81315 0.84970 0.85055 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.14 36.01 0.37 -0.21 16 2 C 0.15 1.36 6.78 -82.56 -0.56 0.80 16 3 C -0.13 -1.12 9.21 -38.95 -0.36 -1.48 16 4 C -0.07 -0.87 5.94 -104.34 -0.62 -1.49 16 5 C 0.59 8.05 7.49 -12.30 -0.09 7.96 16 6 O -0.47 -7.86 11.63 -11.79 -0.14 -8.00 16 7 N -1.05 -13.17 5.56 30.54 0.17 -13.00 16 8 S 2.56 45.02 5.11 -107.50 -0.55 44.47 16 9 O -0.95 -18.07 18.08 -57.54 -1.04 -19.11 16 10 O -0.93 -19.78 17.04 -64.79 -1.10 -20.88 16 11 C -0.57 -11.03 5.82 37.16 0.22 -10.82 16 12 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 13 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 14 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.07 -0.84 5.76 -106.52 -0.61 -1.45 16 22 C -0.10 -1.27 9.25 -39.60 -0.37 -1.63 16 23 C -0.11 -1.11 9.96 -39.89 -0.40 -1.51 16 24 C -0.09 -0.80 9.94 -39.95 -0.40 -1.20 16 25 C -0.10 -0.95 9.98 -39.43 -0.39 -1.35 16 26 C 0.13 1.52 6.61 -84.87 -0.56 0.96 16 27 N -0.45 -5.02 10.19 -7.25 -0.07 -5.10 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.15 0.76 6.55 -52.49 -0.34 0.42 16 32 H 0.43 3.52 6.96 -34.47 -0.24 3.28 16 33 H 0.13 2.47 7.19 -51.92 -0.37 2.10 16 34 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.17 2.32 4.98 -52.49 -0.26 2.05 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -36.95 362.86 -10.44 -47.39 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.56 Total: 2.07 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -4.33 Total: -23.88 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.83 Total: -43.63 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.28 Total: -48.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 45.02 SS G_CDS: -0.55 Total: 44.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.95 -10.44 -47.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185321048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.116 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds