Wall clock time and date at job start Wed Apr 1 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 S 1.65606 * 134.45609 * 204.64192 * 12 11 9 14 14 O 1.42096 * 106.39775 * 23.40924 * 13 12 11 15 15 O 1.42095 * 106.40027 * 156.32738 * 13 12 11 16 16 C 1.76196 * 107.21681 * 269.87124 * 13 12 11 17 17 C 1.38285 * 119.93092 * 269.72122 * 16 13 12 18 18 C 1.38128 * 120.06125 * 179.77259 * 17 16 13 19 19 C 1.38822 * 119.93474 * 0.48163 * 18 17 16 20 20 N 1.40201 * 120.06571 * 179.74953 * 19 18 17 21 21 C 1.36567 * 125.66804 * 179.71262 * 20 19 18 22 22 C 1.34852 * 108.19792 * 179.86661 * 21 20 19 23 23 C 1.40941 * 107.47112 * 0.39284 * 22 21 20 24 24 C 1.34858 * 107.46426 * 359.75609 * 23 22 21 25 25 C 1.38824 * 119.86876 * 359.77221 * 19 18 17 26 26 C 1.38118 * 119.93506 * 359.97438 * 25 19 18 27 27 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 30 30 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 31 31 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 32 32 H 1.07998 * 119.96778 * 0.02562 * 17 16 13 33 33 H 1.07996 * 120.02768 * 180.26002 * 18 17 16 34 34 H 1.08002 * 125.90305 * 0.02562 * 21 20 19 35 35 H 1.08001 * 126.26949 * 180.15040 * 22 21 20 36 36 H 1.08000 * 126.27030 * 179.75281 * 23 22 21 37 37 H 1.08000 * 125.90040 * 180.02562 * 24 23 22 38 38 H 1.08005 * 120.03087 * 179.97438 * 25 19 18 39 39 H 1.08009 * 119.96706 * 179.97438 * 26 25 19 40 40 H 1.08993 * 113.76952 * 221.15022 * 27 12 11 41 41 H 1.08993 * 113.76905 * 89.74994 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 16 0.7628 -5.8183 1.4859 14 8 -0.5541 -5.7212 2.0108 15 8 1.1097 -6.6819 0.4121 16 6 1.8053 -6.2595 2.8361 17 6 3.0087 -6.8980 2.5987 18 6 3.8303 -7.2408 3.6549 19 6 3.4422 -6.9527 4.9562 20 7 4.2715 -7.3041 6.0306 21 6 4.0068 -7.0718 7.3501 22 6 5.0348 -7.5545 8.0772 23 6 5.9728 -8.0968 7.1758 24 6 5.4811 -7.9304 5.9312 25 6 2.2311 -6.3163 5.1917 26 6 1.4162 -5.9713 4.1312 27 6 2.1609 -3.7402 0.0462 28 1 -0.4850 0.8401 0.0004 29 1 -0.3474 -1.7969 -1.0267 30 1 1.3275 -2.4975 2.2141 31 1 -0.3215 -2.8326 1.5249 32 1 3.3084 -7.1251 1.5863 33 1 4.7719 -7.7357 3.4686 34 1 3.1252 -6.5876 7.7435 35 1 5.1249 -7.5268 9.1531 36 1 6.9132 -8.5606 7.4345 37 1 5.9607 -8.2394 5.0142 38 1 1.9264 -6.0913 6.2031 39 1 0.4736 -5.4765 4.3139 40 1 2.2027 -4.2899 -0.8940 41 1 3.1456 -3.5472 0.4717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189520074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:47 Heat of formation + Delta-G solvation = -16.512007 kcal Electronic energy + Delta-G solvation = -27728.074974 eV Core-core repulsion = 23701.880199 eV Total energy + Delta-G solvation = -4026.194774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.69833 -40.17976 -40.00567 -38.36030 -37.00067 -35.73758 -34.45067 -34.08653 -32.54065 -30.16828 -29.87512 -29.53927 -26.96866 -26.41343 -24.63283 -24.32360 -21.48880 -21.23294 -21.05811 -20.12784 -19.64249 -19.30054 -18.66288 -18.12807 -17.30873 -16.92266 -16.15257 -16.13357 -16.11876 -15.98731 -15.60132 -15.19558 -15.02377 -14.86007 -14.68668 -14.53750 -14.06312 -13.98816 -13.83612 -13.38575 -13.33377 -13.27993 -13.23054 -13.21028 -13.07897 -12.80836 -12.55402 -12.42633 -12.23836 -12.14455 -12.07711 -11.27757 -11.06649 -10.60061 -10.34786 -10.31389 -9.81978 -9.31848 -9.29994 -8.20456 -6.37517 -0.83043 -0.55323 0.04010 1.20016 1.50216 1.52512 1.59324 1.66267 1.89444 1.98869 2.39707 2.43389 2.76322 2.98719 3.08515 3.40739 3.55862 3.67597 3.92068 3.95574 4.05008 4.19976 4.29995 4.31642 4.37120 4.45592 4.61243 4.66911 4.71764 4.73249 4.75926 4.83740 4.89063 5.03065 5.10028 5.24795 5.25938 5.26136 5.43761 5.74837 5.82979 5.87597 6.01568 6.11660 6.29665 6.69072 7.35430 7.50939 8.84906 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.002936 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.533803 B = 9534.792537 C =10796.792666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.029 3.971 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.217 3.783 10 O -0.588 6.588 11 C 0.112 3.888 12 N -1.029 6.029 13 S 2.713 3.287 14 O -0.989 6.989 15 O -0.984 6.984 16 C -0.698 4.698 17 C 0.004 3.996 18 C -0.162 4.162 19 C 0.190 3.810 20 N -0.411 5.411 21 C -0.032 4.032 22 C -0.195 4.195 23 C -0.195 4.195 24 C -0.029 4.029 25 C -0.163 4.163 26 C 0.001 3.999 27 C 0.137 3.863 28 H 0.274 0.726 29 H 0.386 0.614 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -12.222 13.918 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.172 4.172 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.096 0.904 9 C 0.174 3.826 10 O -0.399 6.399 11 C -0.013 4.013 12 N -0.869 5.869 13 S 2.810 3.190 14 O -0.980 6.980 15 O -0.975 6.975 16 C -0.788 4.788 17 C -0.016 4.016 18 C -0.182 4.182 19 C 0.096 3.904 20 N -0.084 5.084 21 C -0.156 4.156 22 C -0.219 4.219 23 C -0.219 4.219 24 C -0.154 4.154 25 C -0.184 4.184 26 C -0.019 4.019 27 C 0.012 3.988 28 H 0.083 0.917 29 H 0.240 0.760 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.204 0.796 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.093 0.907 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.709 -13.373 13.299 21.212 hybrid contribution 0.177 1.430 0.605 1.563 sum 9.886 -11.943 13.904 20.825 Atomic orbital electron populations 1.69492 1.07226 1.28798 1.50466 1.25787 0.95704 1.02657 0.93007 0.85468 0.78210 0.78173 0.78894 1.21303 1.19234 1.19882 1.21807 0.94327 0.90726 1.52185 0.90425 1.20254 0.86053 0.92109 0.84189 1.86034 1.47618 1.49701 1.56591 1.23708 0.99151 0.76706 1.01763 1.60070 1.53814 1.19493 1.53503 1.00938 0.73439 0.71367 0.73267 1.93498 1.36696 1.86493 1.81267 1.93495 1.85148 1.64862 1.53965 1.30934 1.14539 1.17602 1.15726 1.20994 0.89863 0.89875 1.00894 1.21172 1.02580 1.04696 0.89748 1.18328 0.90470 0.94182 0.87435 1.41922 1.16169 1.45200 1.05127 1.22455 1.03613 1.08190 0.81364 1.21419 0.95152 1.04726 1.00567 1.21423 1.02044 1.06564 0.91861 1.22481 0.87196 1.04264 1.01474 1.21140 0.93477 1.02502 1.01260 1.20948 0.98614 0.92214 0.90141 1.23118 0.93037 0.91955 0.90650 0.91664 0.76032 0.88981 0.92616 0.82409 0.81605 0.79830 0.82214 0.82132 0.79559 0.81950 0.83069 0.90670 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.66 11.20 21.45 0.24 -46.42 16 2 C 0.03 1.40 5.40 84.66 0.46 1.86 16 3 Si 0.97 38.83 29.54 68.60 2.03 40.85 16 4 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.55 -26.60 8.61 25.60 0.22 -26.38 16 8 H 0.08 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.22 10.15 1.40 -10.88 -0.02 10.13 16 10 O -0.59 -30.51 13.49 -148.98 -2.01 -32.52 16 11 C 0.11 4.78 8.38 86.45 0.72 5.51 16 12 N -1.03 -39.75 4.12 -532.66 -2.19 -41.94 16 13 S 2.71 97.76 6.23 -56.49 -0.35 97.41 16 14 O -0.99 -40.66 17.25 -128.00 -2.21 -42.86 16 15 O -0.98 -38.86 17.24 -128.00 -2.21 -41.06 16 16 C -0.70 -19.73 5.98 22.29 0.13 -19.59 16 17 C 0.00 0.09 9.51 22.25 0.21 0.30 16 18 C -0.16 -3.23 9.45 22.38 0.21 -3.01 16 19 C 0.19 3.97 6.62 38.08 0.25 4.22 16 20 N -0.41 -7.82 2.97 -346.67 -1.03 -8.85 16 21 C -0.03 -0.53 10.74 83.18 0.89 0.36 16 22 C -0.20 -3.07 10.86 22.15 0.24 -2.83 16 23 C -0.20 -3.03 10.86 22.16 0.24 -2.79 16 24 C -0.03 -0.48 10.74 83.18 0.89 0.41 16 25 C -0.16 -3.42 9.45 22.38 0.21 -3.21 16 26 C 0.00 0.02 9.51 22.25 0.21 0.23 16 27 C 0.14 5.31 8.37 86.49 0.72 6.03 16 28 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 29 H 0.39 20.49 6.60 -74.06 -0.49 20.00 16 30 H 0.09 3.59 8.09 -2.39 -0.02 3.57 16 31 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.16 3.39 7.60 -2.91 -0.02 3.37 16 33 H 0.17 2.26 6.71 -2.91 -0.02 2.24 16 34 H 0.18 2.22 7.01 -2.91 -0.02 2.20 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.19 2.06 7.01 -2.91 -0.02 2.04 16 38 H 0.16 2.46 6.71 -2.91 -0.02 2.44 16 39 H 0.15 3.63 7.61 -2.91 -0.02 3.61 16 40 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.11 3.64 8.09 -2.39 -0.02 3.62 16 Total: -1.00 -65.29 363.17 -1.54 -66.83 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.59 Total: 37.35 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 5.61 Total: -28.78 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -2.99 Total: -97.21 kcal Atomic # 8 Polarization: -110.02 SS G_CDS: -6.42 Total: -116.45 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: 97.76 SS G_CDS: -0.35 Total: 97.41 kcal Total: -65.29 -1.54 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189520074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.316 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds