Wall clock time and date at job start Wed Apr 1 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86799 * 119.99975 * 2 1 4 4 H 1.48504 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47210 * 299.99734 * 3 2 1 6 6 H 1.48504 * 109.46894 * 60.00056 * 3 2 1 7 7 C 1.38650 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99491 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99936 * 185.38271 * 9 7 2 11 11 C 1.38949 * 120.04008 * 5.76600 * 10 9 7 12 12 C 1.38117 * 120.06385 * 179.97438 * 11 10 9 13 13 C 1.38206 * 120.13169 * 359.72373 * 12 11 10 14 14 C 1.38875 * 120.07721 * 0.55159 * 13 12 11 15 15 N 1.40194 * 120.03381 * 179.72055 * 14 13 12 16 16 C 1.33840 * 124.19203 * 353.62791 * 15 14 13 17 17 O 1.21535 * 123.78324 * 359.97438 * 16 15 14 18 18 N 1.34623 * 112.43720 * 180.02562 * 16 15 14 19 19 C 1.47042 * 106.49441 * 359.97438 * 18 16 15 20 20 C 1.52249 * 110.26145 * 241.90210 * 19 18 16 21 21 C 1.53139 * 109.91982 * 306.86094 * 20 19 18 22 22 S 1.81744 * 108.84125 * 297.56674 * 21 20 19 23 23 C 1.81736 * 102.27558 * 53.53804 * 22 21 20 24 24 C 1.52050 * 110.30819 * 117.96818 * 19 18 16 25 25 C 1.34869 * 124.18760 * 173.62163 * 15 14 13 26 26 O 1.21229 * 127.21466 * 0.02562 * 25 15 14 27 27 C 1.38713 * 119.93314 * 359.45238 * 14 13 12 28 28 H 0.96998 * 119.99925 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.96487 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.93068 * 180.02562 * 12 11 10 31 31 H 1.08006 * 119.96191 * 180.27721 * 13 12 11 32 32 H 0.96993 * 126.75565 * 179.97438 * 18 16 15 33 33 H 1.08998 * 109.37800 * 186.75434 * 20 19 18 34 34 H 1.08997 * 109.37870 * 66.97230 * 20 19 18 35 35 H 1.09007 * 109.57567 * 57.37284 * 21 20 19 36 36 H 1.08993 * 109.57670 * 177.75385 * 21 20 19 37 37 H 1.08999 * 109.57929 * 66.27318 * 23 22 21 38 38 H 1.08999 * 109.57598 * 186.66833 * 23 22 21 39 39 H 1.09003 * 109.42227 * 292.94910 * 24 19 18 40 40 H 1.09001 * 109.31843 * 173.18302 * 24 19 18 41 41 H 1.07994 * 120.06250 * 180.29934 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0694 -3.5042 0.1145 11 6 3.4376 -3.4275 0.3445 12 6 4.1854 -4.5828 0.4611 13 6 3.5749 -5.8182 0.3552 14 6 2.2088 -5.9014 0.1197 15 7 1.5914 -7.1550 0.0066 16 6 2.2510 -8.3195 -0.0109 17 8 3.4601 -8.4125 0.0692 18 7 1.4251 -9.3761 -0.1285 19 6 0.0601 -8.8336 -0.1951 20 6 -0.7639 -9.3333 0.9837 21 6 -0.6966 -10.8614 1.0569 22 16 -1.4274 -11.5543 -0.4560 23 6 -0.4956 -10.7000 -1.7616 24 6 -0.5849 -9.1895 -1.5253 25 6 0.2591 -7.3370 -0.0978 26 8 -0.5990 -6.4807 -0.1116 27 6 1.4548 -4.7431 0.0021 28 1 -0.4850 0.8400 -0.0004 29 1 3.9165 -2.4635 0.4329 30 1 5.2487 -4.5207 0.6402 31 1 4.1616 -6.7198 0.4513 32 1 1.6803 -10.3112 -0.1625 33 1 -1.8010 -9.0225 0.8575 34 1 -0.3689 -8.9091 1.9067 35 1 0.3434 -11.1777 1.1381 36 1 -1.2552 -11.2104 1.9253 37 1 0.5479 -11.0134 -1.7303 38 1 -0.9231 -10.9433 -2.7343 39 1 -0.0683 -8.6663 -2.3300 40 1 -1.6319 -8.8869 -1.5107 41 1 0.3915 -4.8055 -0.1762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277935259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:59 Heat of formation + Delta-G solvation = -21.526771 kcal Electronic energy + Delta-G solvation = -28419.054841 eV Core-core repulsion = 24392.642610 eV Total energy + Delta-G solvation = -4026.412231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14427 -39.18586 -38.91063 -37.89467 -36.47715 -35.36745 -32.99116 -32.28862 -32.28069 -29.93994 -28.86204 -27.89156 -25.44205 -23.98323 -23.88218 -23.26067 -21.85180 -20.66437 -20.44409 -18.58164 -17.73433 -17.53350 -17.09310 -17.04574 -16.30371 -15.85417 -15.63434 -15.25208 -15.05766 -14.81816 -14.38657 -14.35831 -14.32448 -14.11083 -13.81186 -13.58984 -13.43034 -13.29450 -12.85250 -12.64323 -12.35743 -12.21504 -11.91601 -11.89121 -11.58913 -11.28202 -11.19892 -11.09528 -10.50495 -10.43308 -10.30860 -10.17745 -9.88308 -9.80947 -9.34357 -8.86727 -8.19008 -7.97911 -7.28245 -6.47129 -4.06739 1.19441 1.36244 1.84259 1.97124 1.97758 2.27876 2.73390 3.01971 3.12698 3.13479 3.18608 3.46753 3.80731 3.94890 4.06335 4.25575 4.47647 4.51136 4.54942 4.66079 4.82405 4.93157 5.07475 5.12281 5.18176 5.22873 5.24747 5.41427 5.43596 5.52857 5.64017 5.98616 6.04576 6.22318 6.38649 6.46859 6.61329 6.88306 7.04178 7.19662 7.27901 7.31305 7.39987 7.68494 7.95888 7.97667 8.97705 9.66503 10.70556 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.002664 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.709065 B =10506.241858 C =11456.286906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.167 3.833 11 C -0.234 4.234 12 C -0.059 4.059 13 C -0.223 4.223 14 C 0.161 3.839 15 N -0.510 5.510 16 C 0.707 3.293 17 O -0.523 6.523 18 N -0.723 5.723 19 C 0.120 3.880 20 C -0.117 4.117 21 C -0.081 4.081 22 S -0.253 6.253 23 C -0.081 4.081 24 C -0.118 4.118 25 C 0.526 3.474 26 O -0.431 6.431 27 C -0.208 4.208 28 H 0.270 0.730 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.437 0.563 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -22.187 -0.507 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.112 3.888 11 C -0.254 4.254 12 C -0.078 4.078 13 C -0.244 4.244 14 C 0.071 3.929 15 N -0.247 5.247 16 C 0.408 3.592 17 O -0.396 6.396 18 N -0.389 5.389 19 C 0.029 3.971 20 C -0.157 4.157 21 C -0.229 4.229 22 S -0.027 6.027 23 C -0.229 4.229 24 C -0.158 4.158 25 C 0.312 3.688 26 O -0.298 6.298 27 C -0.229 4.229 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.163 0.837 32 H 0.283 0.717 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.767 -22.233 -0.595 22.311 hybrid contribution 1.605 1.296 0.138 2.067 sum -0.163 -20.937 -0.458 20.943 Atomic orbital electron populations 1.70061 1.05969 1.27653 1.45644 1.25315 0.95861 0.98865 0.96457 0.85632 0.79151 0.80275 0.78281 1.19039 1.20104 1.20110 1.21394 0.91868 0.80668 1.52944 0.88887 1.84002 1.34107 1.11308 1.78019 1.18960 0.90054 0.87568 0.92173 1.21320 0.94255 0.99278 1.10509 1.20647 0.98716 0.91423 0.97019 1.21094 0.92498 0.99546 1.11217 1.17212 0.92302 0.80280 1.03093 1.43660 1.08736 1.07173 1.65156 1.15796 0.85330 0.80478 0.77603 1.90905 1.10449 1.84444 1.53774 1.45710 1.05493 1.08513 1.79211 1.21152 0.85091 0.91794 0.99105 1.21885 1.02016 0.94928 0.96901 1.23446 1.04389 0.96612 0.98497 1.87109 1.54669 1.58973 1.01924 1.23446 1.02983 0.95928 1.00575 1.21859 1.03678 0.95765 0.94501 1.20548 0.82040 0.90388 0.75871 1.90816 1.46589 1.48747 1.43624 1.20229 1.01507 0.88521 1.12632 0.91986 0.85114 0.86536 0.83684 0.71733 0.87549 0.89241 0.89443 0.86460 0.89439 0.86452 0.89212 0.87538 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.95 9.44 30.88 0.29 -10.66 16 8 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 9 O -0.17 -4.95 9.76 0.05 0.00 -4.95 16 10 C 0.17 4.14 6.64 -39.13 -0.26 3.88 16 11 C -0.23 -5.13 9.13 -39.36 -0.36 -5.49 16 12 C -0.06 -1.12 10.03 -39.64 -0.40 -1.52 16 13 C -0.22 -4.27 9.25 -39.36 -0.36 -4.63 16 14 C 0.16 3.16 6.56 -83.62 -0.55 2.61 16 15 N -0.51 -8.15 2.83 -64.41 -0.18 -8.33 16 16 C 0.71 9.79 8.54 -87.89 -0.75 9.04 16 17 O -0.52 -8.59 14.66 5.33 0.08 -8.51 16 18 N -0.72 -6.48 4.72 -54.01 -0.25 -6.73 16 19 C 0.12 1.10 0.81 -133.25 -0.11 0.99 16 20 C -0.12 -0.86 4.91 -27.04 -0.13 -1.00 16 21 C -0.08 -0.45 6.27 37.23 0.23 -0.22 16 22 S -0.25 -1.71 22.32 -107.50 -2.40 -4.11 16 23 C -0.08 -0.46 6.27 37.23 0.23 -0.22 16 24 C -0.12 -0.88 4.89 -27.14 -0.13 -1.01 16 25 C 0.53 7.51 6.70 -10.65 -0.07 7.44 16 26 O -0.43 -7.49 15.07 5.60 0.08 -7.40 16 27 C -0.21 -4.69 9.26 -39.22 -0.36 -5.05 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.15 2.68 5.18 -52.48 -0.27 2.41 16 32 H 0.44 2.78 7.02 -40.82 -0.29 2.49 16 33 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.09 0.42 6.84 -51.92 -0.36 0.06 16 36 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.43 6.84 -51.93 -0.36 0.07 16 38 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.11 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.15 3.39 5.37 -52.49 -0.28 3.11 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -33.36 345.40 -8.77 -42.13 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.21 Total: 6.59 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.83 Total: -4.85 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.32 Total: -39.52 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.16 Total: -20.86 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.40 Total: -4.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.36 -8.77 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277935259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.604 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds