Wall clock time and date at job start Wed Apr 1 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21547 * 120.00429 * 0.02562 * 13 12 2 15 15 C 1.47851 * 119.99649 * 179.97438 * 13 12 2 16 16 C 1.39594 * 120.14449 * 359.72746 * 15 13 12 17 17 C 1.37942 * 119.85393 * 179.79163 * 16 15 13 18 18 C 1.38377 * 120.13986 * 0.48352 * 17 16 15 19 19 C 1.38338 * 120.29584 * 359.74430 * 18 17 16 20 20 C 1.50700 * 119.92681 * 180.02562 * 19 18 17 21 21 N 1.46498 * 109.47134 * 270.02446 * 20 19 18 22 22 C 1.32250 * 119.36758 * 269.75275 * 21 20 19 23 23 O 1.21244 * 123.10242 * 359.97438 * 22 21 20 24 24 C 1.51311 * 113.79813 * 179.84193 * 22 21 20 25 25 S 1.82469 * 103.00450 * 0.36298 * 24 22 21 26 26 C 1.33469 * 119.37642 * 90.02603 * 21 20 19 27 27 O 1.21574 * 126.15610 * 359.97438 * 26 21 20 28 28 C 1.37975 * 120.14614 * 0.02562 * 19 18 17 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 34 34 H 1.08005 * 120.07249 * 359.97438 * 16 15 13 35 35 H 1.07996 * 119.92914 * 180.22686 * 17 16 15 36 36 H 1.08007 * 119.84994 * 179.76776 * 18 17 16 37 37 H 1.08996 * 109.47470 * 30.02389 * 20 19 18 38 38 H 1.09000 * 109.47154 * 150.02512 * 20 19 18 39 39 H 1.09003 * 110.87037 * 241.90852 * 24 22 21 40 40 H 1.08995 * 110.68953 * 118.73960 * 24 22 21 41 41 H 1.07998 * 120.07346 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6394 -0.7154 3.5644 16 6 2.9663 -2.0713 3.5066 17 6 3.4292 -2.7147 4.6356 18 6 3.5602 -2.0215 5.8260 19 6 3.2334 -0.6788 5.8912 20 6 3.3798 0.0683 7.1918 21 7 2.1298 -0.0223 7.9503 22 6 1.1994 0.9020 7.7800 23 8 1.3260 1.8365 7.0181 24 6 -0.0391 0.6839 8.6215 25 16 0.3546 -0.8402 9.5443 26 6 1.9538 -1.0330 8.8041 27 8 2.7474 -1.9251 9.0329 28 6 2.7738 -0.0222 4.7681 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.7092 1.1618 -3.4843 33 1 2.2490 -1.6318 1.1525 34 1 2.8599 -2.6146 2.5793 35 1 3.6860 -3.7628 4.5913 36 1 3.9195 -2.5308 6.7080 37 1 4.1904 -0.3704 7.7736 38 1 3.6051 1.1147 6.9863 39 1 -0.9161 0.5371 7.9910 40 1 -0.1927 1.5194 9.3045 41 1 2.5194 1.0261 4.8203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299635749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:46 Heat of formation + Delta-G solvation = -60.439354 kcal Electronic energy + Delta-G solvation = -27487.258681 eV Core-core repulsion = 23459.159074 eV Total energy + Delta-G solvation = -4028.099607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17856 -39.80095 -39.26568 -38.07987 -36.34469 -34.85320 -33.28763 -32.33327 -31.13519 -30.51254 -28.77870 -27.04094 -25.29207 -25.05180 -23.89186 -22.23990 -21.34767 -20.68692 -19.38912 -18.98354 -18.16982 -17.87898 -17.18484 -16.36132 -16.17430 -15.84447 -15.49327 -15.38721 -15.08838 -14.90701 -14.75413 -14.56522 -14.26497 -13.99228 -13.81355 -13.34562 -13.03708 -12.64286 -12.55836 -12.40352 -12.17246 -11.80952 -11.72424 -11.41837 -11.31135 -11.11451 -10.98558 -10.77050 -10.46895 -10.45335 -10.32772 -10.26493 -9.18956 -9.12120 -9.06864 -9.04119 -8.95196 -8.58177 -7.95078 -6.14707 -4.24200 0.20256 0.66250 0.76336 0.95039 1.21184 2.02243 2.21062 3.20659 3.22318 3.29961 3.31589 3.32582 3.95352 4.08445 4.26468 4.33460 4.38132 4.46136 4.59617 4.66680 4.89478 4.92395 5.10807 5.17561 5.20551 5.32353 5.48897 5.74723 5.88269 6.08434 6.28989 6.31464 6.37185 6.40469 6.76066 6.81463 6.92682 6.94318 7.12242 7.40744 7.52959 7.66594 7.88607 8.11950 8.60504 8.74594 9.05206 9.43276 10.91393 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.020470 B = 0.002365 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.552165 B =11836.010028 C =12522.035990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.701 5.701 13 C 0.540 3.460 14 O -0.547 6.547 15 C -0.123 4.123 16 C -0.075 4.075 17 C -0.130 4.130 18 C -0.081 4.081 19 C -0.138 4.138 20 C 0.140 3.860 21 N -0.569 5.569 22 C 0.525 3.475 23 O -0.445 6.445 24 C -0.133 4.133 25 S -0.131 6.131 26 C 0.550 3.450 27 O -0.432 6.432 28 C -0.040 4.040 29 H 0.015 0.985 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -4.768 24.935 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.349 5.349 13 C 0.325 3.675 14 O -0.427 6.427 15 C -0.126 4.126 16 C -0.094 4.094 17 C -0.148 4.148 18 C -0.099 4.099 19 C -0.139 4.139 20 C 0.017 3.983 21 N -0.315 5.315 22 C 0.311 3.689 23 O -0.315 6.315 24 C -0.284 4.284 25 S 0.096 5.904 26 C 0.229 3.771 27 O -0.304 6.304 28 C -0.060 4.060 29 H 0.034 0.966 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.221 0.779 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.677 -4.430 25.368 25.761 hybrid contribution 0.953 -0.390 -1.764 2.042 sum 1.629 -4.820 23.605 24.147 Atomic orbital electron populations 1.22080 0.98329 0.99160 1.00999 1.18796 0.91113 0.94068 0.79793 0.93186 1.21238 1.32483 1.13263 0.90275 0.92017 1.24892 0.94782 0.94953 0.99081 1.69912 1.35845 1.22409 1.23831 0.86383 0.78610 0.79522 0.82523 1.19729 1.20845 1.20837 1.46502 1.64450 1.13525 1.10391 1.18200 0.79092 0.86854 0.83357 1.90741 1.51347 1.15554 1.85027 1.20366 1.02742 0.94327 0.95191 1.21532 0.95352 0.93597 0.98918 1.21084 1.00892 1.00299 0.92529 1.21266 0.97235 0.93254 0.98195 1.19764 1.04692 0.94822 0.94593 1.20853 0.84083 1.03405 0.89973 1.46494 1.20359 1.25249 1.39392 1.19712 0.84341 0.81923 0.82942 1.90922 1.78325 1.28594 1.33612 1.24533 1.01455 1.00054 1.02341 1.87955 1.17134 1.31531 1.53792 1.21778 0.91603 0.82809 0.80871 1.90905 1.46536 1.32052 1.60922 1.21296 0.93437 1.00801 0.90448 0.96607 0.89022 0.95445 0.92578 0.77879 0.85057 0.85233 0.85382 0.87301 0.86932 0.82654 0.82733 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.70 -14.93 5.02 -55.88 -0.28 -15.21 16 13 C 0.54 11.33 7.74 -12.33 -0.10 11.24 16 14 O -0.55 -13.59 16.01 5.32 0.09 -13.50 16 15 C -0.12 -2.02 5.87 -104.97 -0.62 -2.63 16 16 C -0.07 -0.99 9.54 -39.18 -0.37 -1.37 16 17 C -0.13 -1.44 10.03 -39.64 -0.40 -1.83 16 18 C -0.08 -0.88 9.69 -39.49 -0.38 -1.26 16 19 C -0.14 -1.62 5.45 -104.68 -0.57 -2.19 16 20 C 0.14 1.30 5.31 -5.19 -0.03 1.27 16 21 N -0.57 -5.17 2.45 -120.78 -0.30 -5.47 16 22 C 0.53 4.73 7.79 -11.80 -0.09 4.64 16 23 O -0.45 -5.52 16.53 5.59 0.09 -5.42 16 24 C -0.13 -0.69 7.41 36.31 0.27 -0.42 16 25 S -0.13 -0.91 23.40 -107.50 -2.52 -3.43 16 26 C 0.55 5.09 8.33 53.47 0.45 5.53 16 27 O -0.43 -4.85 17.06 5.30 0.09 -4.76 16 28 C -0.04 -0.60 9.24 -39.19 -0.36 -0.96 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.39 7.08 6.57 -40.82 -0.27 6.81 16 34 H 0.13 1.56 6.41 -52.48 -0.34 1.23 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.22 7.86 -52.48 -0.41 0.80 16 37 H 0.11 0.84 7.55 -51.93 -0.39 0.44 16 38 H 0.11 1.01 7.40 -51.93 -0.38 0.63 16 39 H 0.16 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.15 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.14 2.31 7.27 -52.49 -0.38 1.93 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -33.59 368.30 -8.64 -42.23 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.54 Total: 6.20 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.43 Total: 2.49 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.05 Total: -44.92 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.27 Total: -23.69 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.52 Total: -3.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.59 -8.64 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.212 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds