Wall clock time and date at job start Wed Apr 1 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39357 * 119.46498 * 2 1 4 4 C 1.36149 * 120.86779 * 180.02562 * 3 2 1 5 5 C 1.40430 * 119.61044 * 359.97438 * 4 3 2 6 6 C 1.40765 * 121.36995 * 179.97438 * 5 4 3 7 7 C 1.36579 * 118.15049 * 180.02562 * 6 5 4 8 8 C 1.39328 * 119.92997 * 359.97438 * 7 6 5 9 9 N 1.31086 * 121.75247 * 0.02562 * 8 7 6 10 10 C 1.33678 * 121.32162 * 359.97196 * 9 8 7 11 11 C 1.36072 * 119.46668 * 179.69950 * 2 1 3 12 12 S 1.76199 * 120.12831 * 0.02562 * 11 2 1 13 13 O 1.42106 * 106.40006 * 30.95748 * 12 11 2 14 14 O 1.42099 * 106.40463 * 163.87789 * 12 11 2 15 15 N 1.65605 * 107.22031 * 277.42058 * 12 11 2 16 16 C 1.47064 * 136.05421 * 269.63274 * 15 12 11 17 17 C 1.53238 * 88.07838 * 207.19926 * 16 15 12 18 18 O 1.42898 * 114.01890 * 87.71386 * 17 16 15 19 19 C 1.50703 * 114.50459 * 220.45581 * 17 16 15 20 20 H 1.08000 * 120.00298 * 93.84353 * 19 17 16 21 21 C 1.37882 * 119.99892 * 273.84564 * 19 17 16 22 22 N 1.31515 * 119.99933 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99754 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47737 * 59.99623 * 23 21 19 25 25 H 1.48498 * 109.47188 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47178 * 299.99381 * 23 21 19 27 27 C 1.47067 * 136.05697 * 89.98988 * 15 12 11 28 28 H 1.08998 * 109.47206 * 96.05095 * 1 2 3 29 29 H 1.08999 * 109.47093 * 216.05174 * 1 2 3 30 30 H 1.09001 * 109.46684 * 336.05057 * 1 2 3 31 31 H 1.08001 * 119.56736 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.19257 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.93233 * 0.04866 * 6 5 4 34 34 H 1.07997 * 120.03633 * 179.97438 * 7 6 5 35 35 H 1.08011 * 119.12253 * 179.97438 * 8 7 6 36 36 H 1.09000 * 113.47045 * 321.92546 * 16 15 12 37 37 H 1.08998 * 113.47071 * 92.37654 * 16 15 12 38 38 H 0.96707 * 114.00086 * 86.39363 * 18 17 16 39 39 H 0.96996 * 119.99676 * 179.97438 * 22 21 19 40 40 H 1.08994 * 113.47360 * 267.62912 * 27 15 12 41 41 H 1.09003 * 113.46419 * 38.01334 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.2133 0.0000 4 6 3.5536 1.2467 -0.0005 5 6 4.2771 0.0431 -0.0005 6 6 5.6847 0.0343 -0.0016 7 6 6.3216 -1.1739 -0.0021 8 6 5.5776 -2.3519 -0.0009 9 7 4.2668 -2.3399 0.0001 10 6 3.5823 -1.1916 0.0006 11 6 2.1764 -1.1847 0.0062 12 16 1.2846 -2.7043 0.0135 13 8 0.0735 -2.4622 -0.6894 14 8 2.2111 -3.7151 -0.3596 15 7 0.8597 -3.0159 1.5835 16 6 1.4578 -3.7321 2.7201 17 6 0.0394 -3.9771 3.2457 18 8 -0.5753 -5.1601 2.7312 19 6 -0.1083 -3.8300 4.7383 20 1 -0.4189 -2.8854 5.1597 21 6 0.1532 -4.9014 5.5658 22 7 0.5310 -6.0518 5.0526 23 14 -0.0305 -4.7192 7.4158 24 1 -1.4315 -4.3489 7.7402 25 1 0.3075 -6.0057 8.0759 26 1 0.8873 -3.6579 7.9023 27 6 -0.2847 -2.7034 2.4527 28 1 -0.3633 -0.1083 -1.0219 29 1 -0.3633 -0.8308 0.6048 30 1 -0.3633 0.9392 0.4172 31 1 1.6368 2.1394 0.0004 32 1 4.0737 2.1931 -0.0009 33 1 6.2456 0.9573 -0.0017 34 1 7.4007 -1.2161 -0.0033 35 1 6.0946 -3.3002 -0.0018 36 1 1.9765 -4.6467 2.4326 37 1 2.0569 -3.0934 3.3691 38 1 -0.3693 -5.9606 3.2331 39 1 0.7153 -6.8054 5.6348 40 1 -0.1545 -1.7879 3.0297 41 1 -1.2447 -2.7440 1.9379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358900668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:40 Heat of formation + Delta-G solvation = -38.730735 kcal Electronic energy + Delta-G solvation = -29104.893603 eV Core-core repulsion = 25077.735352 eV Total energy + Delta-G solvation = -4027.158251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89680 -40.40221 -38.92351 -37.96713 -36.83404 -35.85386 -34.85257 -34.08663 -32.93046 -31.34609 -29.63914 -28.43892 -26.80363 -26.49902 -25.18439 -23.88231 -23.62716 -21.47226 -19.95970 -19.39419 -19.04431 -18.53187 -18.21749 -17.94896 -17.17273 -16.89089 -16.60119 -16.05987 -15.66829 -15.55883 -15.39799 -15.27808 -14.91021 -14.70732 -14.46457 -14.37042 -13.97793 -13.86137 -13.62707 -13.43172 -13.37527 -13.25814 -13.06976 -12.77772 -12.68276 -12.52551 -12.47484 -12.45636 -12.21725 -12.14437 -11.90871 -11.70430 -11.08962 -10.64369 -10.36560 -10.26176 -9.86737 -9.75991 -9.60087 -8.22975 -6.41343 -0.98080 -0.54301 -0.25984 0.71654 1.49589 1.51079 1.59361 1.74351 2.03886 2.41993 2.76752 2.97148 3.01345 3.16081 3.24297 3.57142 3.67490 3.69693 3.82798 3.91497 3.99577 4.11493 4.24959 4.29936 4.38126 4.51223 4.54243 4.62859 4.64124 4.69259 4.79434 4.88019 4.98415 4.99415 5.06322 5.13769 5.18945 5.21488 5.22953 5.49359 5.70749 5.78285 5.80442 5.98713 6.66227 6.91949 7.31953 7.52579 8.83221 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003901 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.069347 B = 7175.414615 C = 7666.395390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 C -0.153 4.153 4 C -0.017 4.017 5 C -0.150 4.150 6 C -0.037 4.037 7 C -0.180 4.180 8 C 0.132 3.868 9 N -0.520 5.520 10 C 0.170 3.830 11 C -0.702 4.702 12 S 2.713 3.287 13 O -0.985 6.985 14 O -0.969 6.969 15 N -1.035 6.035 16 C 0.115 3.885 17 C 0.218 3.782 18 O -0.588 6.588 19 C -0.549 4.549 20 H 0.083 0.917 21 C 0.025 3.975 22 N -0.924 5.924 23 Si 0.975 3.025 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.267 1.267 27 C 0.135 3.865 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.191 0.809 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.387 0.613 39 H 0.275 0.725 40 H 0.109 0.891 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 19.398 -6.955 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 C -0.171 4.171 4 C -0.035 4.035 5 C -0.153 4.153 6 C -0.063 4.063 7 C -0.200 4.200 8 C -0.039 4.039 9 N -0.229 5.229 10 C 0.047 3.953 11 C -0.792 4.792 12 S 2.810 3.190 13 O -0.976 6.976 14 O -0.960 6.960 15 N -0.874 5.874 16 C -0.011 4.011 17 C 0.175 3.825 18 O -0.401 6.401 19 C -0.587 4.587 20 H 0.101 0.899 21 C -0.175 4.175 22 N -0.565 5.565 23 Si 0.800 3.200 24 H -0.193 1.193 25 H -0.211 1.211 26 H -0.192 1.192 27 C 0.011 3.989 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.197 0.803 32 H 0.207 0.793 33 H 0.208 0.792 34 H 0.199 0.801 35 H 0.192 0.808 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.790 18.377 -8.339 22.429 hybrid contribution 0.942 -0.063 1.261 1.575 sum 10.732 18.314 -7.078 22.375 Atomic orbital electron populations 1.21513 0.88913 1.05224 1.05037 1.19940 0.97249 0.92161 0.84919 1.21432 0.95296 0.97709 1.02698 1.21869 0.94248 0.97850 0.89573 1.19318 0.96298 0.94139 1.05573 1.22041 0.91343 1.00889 0.92000 1.22340 1.03610 0.92219 1.01809 1.23692 0.88835 1.01031 0.90337 1.68388 1.11367 1.28711 1.14465 1.18363 0.91864 0.90135 0.94972 1.30374 1.04529 1.20285 1.24030 1.00939 0.72473 0.74084 0.71519 1.93510 1.46147 1.86982 1.70968 1.93519 1.64404 1.57183 1.80875 1.59924 1.32875 1.68208 1.26365 1.23330 1.00484 0.93639 0.83637 1.19918 0.87984 0.83491 0.91107 1.86010 1.74477 1.20180 1.59409 1.21741 1.47339 0.99097 0.90571 0.89942 1.25902 0.92761 0.94501 1.04293 1.69372 1.46382 1.02913 1.37817 0.85348 0.78953 0.77455 0.78290 1.19349 1.21128 1.19158 1.22896 0.87884 0.98931 0.89220 0.88306 0.92352 0.86187 0.80256 0.79292 0.79227 0.80096 0.80830 0.94248 0.90187 0.75697 0.91486 0.87288 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.32 71.24 0.59 -3.25 16 2 C 0.06 1.68 5.84 -20.10 -0.12 1.56 16 3 C -0.15 -2.79 9.57 22.05 0.21 -2.57 16 4 C -0.02 -0.28 9.78 22.32 0.22 -0.06 16 5 C -0.15 -3.54 5.74 -21.28 -0.12 -3.66 16 6 C -0.04 -0.59 9.90 22.50 0.22 -0.37 16 7 C -0.18 -3.09 10.03 22.14 0.22 -2.87 16 8 C 0.13 3.54 11.15 85.07 0.95 4.49 16 9 N -0.52 -19.60 8.02 -188.63 -1.51 -21.12 16 10 C 0.17 5.88 6.58 40.29 0.26 6.14 16 11 C -0.70 -25.35 5.97 22.34 0.13 -25.22 16 12 S 2.71 120.24 5.56 -56.49 -0.31 119.92 16 13 O -0.99 -44.33 14.74 -128.00 -1.89 -46.22 16 14 O -0.97 -49.51 15.80 -128.00 -2.02 -51.53 16 15 N -1.03 -47.00 4.19 -550.88 -2.31 -49.31 16 16 C 0.12 5.68 8.14 83.10 0.68 6.36 16 17 C 0.22 11.17 1.57 -11.29 -0.02 11.16 16 18 O -0.59 -33.15 13.53 -148.98 -2.02 -35.17 16 19 C -0.55 -28.06 8.70 25.60 0.22 -27.84 16 20 H 0.08 3.92 7.81 -2.91 -0.02 3.90 16 21 C 0.03 1.28 5.39 84.66 0.46 1.74 16 22 N -0.92 -49.68 11.01 21.45 0.24 -49.44 16 23 Si 0.98 40.15 29.54 68.60 2.03 42.17 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 27 C 0.14 5.85 7.02 83.18 0.58 6.44 16 28 H 0.10 2.56 7.78 -2.39 -0.02 2.54 16 29 H 0.06 1.80 5.01 -2.39 -0.01 1.78 16 30 H 0.12 1.95 8.03 -2.39 -0.02 1.93 16 31 H 0.18 1.65 8.05 -2.91 -0.02 1.63 16 32 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.17 3.84 8.06 -2.90 -0.02 3.82 16 36 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 3.70 8.10 -2.39 -0.02 3.68 16 38 H 0.39 22.25 6.32 -74.05 -0.47 21.78 16 39 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.11 3.98 8.10 -2.39 -0.02 3.96 16 41 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -80.18 353.42 -2.69 -82.87 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.61 Total: 35.78 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 4.50 Total: -27.95 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -3.58 Total: -119.87 kcal Atomic # 8 Polarization: -127.00 SS G_CDS: -5.92 Total: -132.92 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 120.24 SS G_CDS: -0.31 Total: 119.92 kcal Total: -80.18 -2.69 -82.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358900668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.136 kcal (2) G-P(sol) polarization free energy of solvation -80.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds