Wall clock time and date at job start Wed Apr 1 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 S 1.76203 * 120.00235 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.39893 * 203.54139 * 6 5 4 8 8 O 1.42101 * 106.40216 * 336.45887 * 6 5 4 9 9 N 1.65603 * 107.21747 * 90.00062 * 6 5 4 10 10 C 1.36447 * 124.85107 * 90.02169 * 9 6 5 11 11 C 1.34486 * 108.85309 * 180.02562 * 10 9 6 12 12 C 1.46684 * 106.33613 * 0.02562 * 11 10 9 13 13 C 1.47261 * 126.94332 * 179.97438 * 12 11 10 14 14 O 1.21625 * 120.00185 * 179.97438 * 13 12 11 15 15 N 1.34782 * 120.00071 * 359.97438 * 13 12 11 16 16 C 1.46501 * 119.99886 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46559 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00449 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99664 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99660 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46899 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47280 * 119.99655 * 21 19 17 24 24 H 1.48499 * 109.47305 * 239.99661 * 21 19 17 25 25 C 1.34653 * 124.84717 * 269.72344 * 9 6 5 26 26 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 27 27 C 1.38234 * 120.00047 * 359.95697 * 26 5 4 28 28 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 29 29 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 30 30 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 33 33 H 1.08004 * 125.57228 * 0.02562 * 10 9 6 34 34 H 1.08006 * 126.82866 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99420 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.46686 * 299.99785 * 16 15 13 37 37 H 1.08992 * 109.46873 * 60.00392 * 16 15 13 38 38 H 0.97004 * 119.99916 * 180.02562 * 20 19 17 39 39 H 1.07999 * 125.80330 * 359.96395 * 25 9 6 40 40 H 1.08001 * 119.99658 * 179.97438 * 26 5 4 41 41 H 1.07999 * 119.99990 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 16 6.0337 -0.0001 0.0127 7 8 6.4369 -1.2488 -0.5327 8 8 6.4370 1.2507 -0.5278 9 7 6.5179 -0.0032 1.5964 10 6 6.7462 -1.1244 2.3397 11 6 7.1236 -0.7562 3.5769 12 6 7.1246 0.7106 3.5885 13 6 7.4686 1.5864 4.7213 14 8 7.4270 2.7949 4.5901 15 7 7.8295 1.0489 5.9034 16 6 8.1712 1.9203 7.0304 17 6 8.5369 1.0768 8.2245 18 1 8.5165 -0.0005 8.1514 19 6 8.8966 1.6806 9.4108 20 7 8.9210 2.9924 9.5000 21 14 9.3493 0.6351 10.8912 22 1 9.2427 -0.8022 10.5333 23 1 10.7422 0.9406 11.3056 24 1 8.4223 0.9358 12.0116 25 6 6.7480 1.1004 2.3328 26 6 3.5805 -1.1972 0.0000 27 6 2.1981 -1.1972 -0.0054 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 0.0104 33 1 6.6412 -2.1414 1.9914 34 1 7.3749 -1.4105 4.3987 35 1 7.8630 0.0852 6.0078 36 1 9.0176 2.5509 6.7585 37 1 7.3148 2.5479 7.2770 38 1 9.1744 3.4172 10.3344 39 1 6.6486 2.1200 1.9910 40 1 4.1205 -2.1325 -0.0002 41 1 1.6581 -2.1325 -0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427613786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:56 Heat of formation + Delta-G solvation = -35.443586 kcal Electronic energy + Delta-G solvation = -26894.042067 eV Core-core repulsion = 22867.026358 eV Total energy + Delta-G solvation = -4027.015709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.37464 -39.87958 -38.31330 -37.93444 -36.52128 -34.15022 -33.61999 -32.42722 -31.61285 -31.54419 -29.39339 -27.89205 -27.29545 -23.80597 -23.44190 -22.53114 -21.68207 -21.58811 -19.64100 -19.39581 -19.02549 -18.25383 -16.91122 -16.40229 -16.03129 -15.58661 -15.38168 -15.25004 -15.10851 -14.70294 -14.49736 -14.37510 -14.27764 -14.09936 -13.90727 -13.56597 -12.92791 -12.88727 -12.85952 -12.71539 -12.68763 -12.59077 -12.48889 -12.22132 -11.89421 -11.78714 -11.71923 -11.33554 -10.93012 -10.90278 -10.30224 -9.70746 -9.58640 -9.35775 -9.34572 -9.17858 -8.72065 -8.60413 -7.81975 -6.14687 -4.21160 -0.49881 0.22880 0.77153 1.48152 2.19505 2.29600 2.93310 3.17297 3.25035 3.32085 3.35142 3.56975 4.06362 4.13427 4.18236 4.20687 4.23231 4.34638 4.43079 4.66227 4.74684 4.78795 4.99297 5.01989 5.08463 5.21668 5.22947 5.38467 5.40845 5.41470 5.50756 5.61367 5.63090 5.89842 6.00171 6.28445 6.34096 6.41410 6.61645 7.35161 7.47042 7.55134 7.70396 7.99377 8.67053 8.81018 9.13836 9.45387 10.95645 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002272 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.506813 B =12321.700225 C =12906.175756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.023 4.023 3 C -0.140 4.140 4 C -0.009 4.009 5 C -0.683 4.683 6 S 2.680 3.320 7 O -0.929 6.929 8 O -0.927 6.927 9 N -0.803 5.803 10 C -0.012 4.012 11 C -0.133 4.133 12 C -0.178 4.178 13 C 0.566 3.434 14 O -0.558 6.558 15 N -0.703 5.703 16 C 0.249 3.751 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.070 3.930 26 C -0.011 4.011 27 C -0.142 4.142 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.391 0.609 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.196 0.804 40 H 0.143 0.857 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.076 -10.813 -21.934 29.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.023 4.023 3 C -0.159 4.159 4 C -0.029 4.029 5 C -0.772 4.772 6 S 2.776 3.224 7 O -0.920 6.920 8 O -0.917 6.917 9 N -0.597 5.597 10 C -0.132 4.132 11 C -0.158 4.158 12 C -0.188 4.188 13 C 0.351 3.649 14 O -0.439 6.439 15 N -0.350 5.350 16 C 0.128 3.872 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.056 4.056 26 C -0.030 4.030 27 C -0.161 4.161 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.204 0.796 34 H 0.176 0.824 35 H 0.224 0.776 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.213 0.787 40 H 0.161 0.839 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.564 -9.807 -22.839 29.327 hybrid contribution -0.364 -0.970 1.250 1.623 sum -15.928 -10.778 -21.589 28.913 Atomic orbital electron populations 1.20982 0.90265 1.03845 1.03168 1.20379 0.96783 0.93286 0.91855 1.21233 0.93983 0.98346 1.02368 1.21001 0.95054 0.96520 0.90283 1.30463 1.25138 1.00239 1.21344 1.02661 0.74287 0.74299 0.71172 1.93636 1.81185 1.43456 1.73712 1.93661 1.81077 1.43136 1.73841 1.53027 1.62973 1.12326 1.31336 1.21843 1.08444 0.90499 0.92450 1.22510 1.02828 0.93577 0.96876 1.21230 1.09274 0.93617 0.94688 1.17370 0.78138 0.87025 0.82323 1.90755 1.54992 1.14452 1.83732 1.46298 1.66120 1.10888 1.11671 1.19143 0.96396 0.89965 0.81664 1.21262 1.47692 0.93222 0.95793 0.91811 1.24955 0.95142 0.95069 0.98911 1.69986 1.47004 1.08449 1.26850 0.86361 0.78140 0.80243 0.82148 1.19628 1.20821 1.20850 1.21951 1.01436 0.91083 0.91151 1.20936 0.94968 0.96327 0.90791 1.21200 0.93967 0.98246 1.02708 0.90110 0.90686 0.90620 0.84537 0.83737 0.79586 0.82408 0.77564 0.95340 0.95373 0.92521 0.78748 0.83921 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 10.01 36.00 0.36 -0.15 16 2 C -0.02 -0.15 5.88 -104.63 -0.62 -0.77 16 3 C -0.14 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.01 -0.08 9.52 -39.58 -0.38 -0.46 16 5 C -0.68 -6.30 5.97 -39.58 -0.24 -6.54 16 6 S 2.68 28.59 5.81 -107.50 -0.62 27.96 16 7 O -0.93 -11.03 16.74 -57.17 -0.96 -11.99 16 8 O -0.93 -11.99 16.72 -57.17 -0.96 -12.95 16 9 N -0.80 -9.26 3.07 -12.85 -0.04 -9.30 16 10 C -0.01 -0.13 10.92 -16.82 -0.18 -0.31 16 11 C -0.13 -1.65 10.56 -37.50 -0.40 -2.05 16 12 C -0.18 -2.86 6.29 -103.35 -0.65 -3.51 16 13 C 0.57 11.86 7.81 -12.59 -0.10 11.76 16 14 O -0.56 -13.77 16.91 5.26 0.09 -13.68 16 15 N -0.70 -15.13 5.54 -62.62 -0.35 -15.47 16 16 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 17 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 21 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.07 0.98 10.69 -16.84 -0.18 0.80 16 26 C -0.01 -0.09 9.52 -39.58 -0.38 -0.46 16 27 C -0.14 -0.97 9.70 -39.58 -0.38 -1.35 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.14 1.11 7.62 -52.49 -0.40 0.71 16 33 H 0.19 1.32 8.04 -52.48 -0.42 0.90 16 34 H 0.16 1.61 7.70 -52.48 -0.40 1.21 16 35 H 0.39 7.18 7.44 -40.82 -0.30 6.88 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.20 2.50 8.02 -52.49 -0.42 2.08 16 40 H 0.14 0.88 7.62 -52.49 -0.40 0.48 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -36.81 374.74 -10.28 -47.08 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.84 Total: 3.45 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.97 Total: -11.19 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.35 Total: -50.11 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.82 Total: -38.62 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 28.59 SS G_CDS: -0.62 Total: 27.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.81 -10.28 -47.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427613786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.640 kcal (2) G-P(sol) polarization free energy of solvation -36.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds