Wall clock time and date at job start Wed Apr 1 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47113 * 126.87974 * 3 2 1 5 5 C 1.36864 * 120.00275 * 287.60785 * 4 3 2 6 6 H 1.08003 * 120.00327 * 166.48830 * 5 4 3 7 7 C 1.39047 * 120.00000 * 346.48498 * 5 4 3 8 8 N 1.31364 * 120.00264 * 36.21826 * 7 5 4 9 9 Si 1.86801 * 120.00324 * 216.22306 * 7 5 4 10 10 H 1.48502 * 109.47096 * 89.99695 * 9 7 5 11 11 H 1.48493 * 109.47591 * 209.99970 * 9 7 5 12 12 H 1.48507 * 109.46960 * 329.99904 * 9 7 5 13 13 C 1.34775 * 119.99562 * 107.60368 * 4 3 2 14 14 O 1.21590 * 119.99922 * 186.39393 * 13 4 3 15 15 C 1.47726 * 120.00093 * 6.40208 * 13 4 3 16 16 C 1.39645 * 120.15042 * 141.77474 * 15 13 4 17 17 C 1.37937 * 119.84479 * 180.02562 * 16 15 13 18 18 C 1.38373 * 120.15646 * 359.97438 * 17 16 15 19 19 S 1.76199 * 119.85217 * 179.97438 * 18 17 16 20 20 O 1.42096 * 106.40211 * 203.53939 * 19 18 17 21 21 O 1.42098 * 106.40093 * 336.46449 * 19 18 17 22 22 N 1.65597 * 107.21410 * 90.00138 * 19 18 17 23 23 C 1.46496 * 120.00110 * 65.00306 * 22 19 18 24 24 C 1.53004 * 117.49967 * 213.62122 * 23 22 19 25 25 C 1.53001 * 60.00013 * 252.50742 * 24 23 22 26 26 C 1.38383 * 120.29949 * 0.25747 * 18 17 16 27 27 C 1.37941 * 120.15146 * 359.48412 * 26 18 17 28 28 H 4.40645 * 5.51451 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.46984 * 6.88356 * 3 2 1 30 30 H 1.08994 * 109.47307 * 246.88475 * 3 2 1 31 31 H 0.97001 * 120.00322 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.07690 * 359.97438 * 16 15 13 33 33 H 1.08009 * 119.92266 * 179.97438 * 17 16 15 34 34 H 0.97005 * 120.00054 * 245.00096 * 22 19 18 35 35 H 1.09002 * 115.55548 * 359.32584 * 23 22 19 36 36 H 1.08999 * 117.49826 * 359.97438 * 24 23 22 37 37 H 1.09004 * 117.50282 * 145.02189 * 24 23 22 38 38 H 1.08994 * 117.50097 * 252.50959 * 25 24 23 39 39 H 1.08998 * 117.51801 * 107.47833 * 25 24 23 40 40 H 1.08006 * 119.91974 * 179.74659 * 26 18 17 41 41 H 1.07995 * 120.07353 * 180.26318 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8298 -1.1049 5 6 3.0242 0.3851 -2.3946 6 1 3.1764 1.0690 -3.2165 7 6 2.7169 -0.9474 -2.6467 8 7 1.8844 -1.5899 -1.8594 9 14 3.4879 -1.8240 -4.1050 10 1 4.7641 -2.4561 -3.6844 11 1 2.5580 -2.8694 -4.6024 12 1 3.7547 -0.8431 -5.1877 13 6 3.6908 2.0306 -0.8512 14 8 3.9894 2.7686 -1.7702 15 6 3.9385 2.4502 0.5434 16 6 5.0964 3.1605 0.8670 17 6 5.3217 3.5486 2.1714 18 6 4.4032 3.2362 3.1580 19 16 4.6993 3.7354 4.8217 20 8 3.9503 2.8520 5.6450 21 8 6.1042 3.9091 4.9445 22 7 4.0244 5.2358 5.0107 23 6 2.5730 5.4047 4.9055 24 6 2.0555 6.7167 4.3124 25 6 1.9155 6.4473 5.8120 26 6 3.2560 2.5284 2.8452 27 6 3.0155 2.1387 1.5440 28 1 -1.0502 0.0000 0.0003 29 1 3.0097 -1.0195 -0.1232 30 1 3.0091 0.4042 0.9451 31 1 1.6698 -2.5193 -2.0355 32 1 5.8144 3.4046 0.0980 33 1 6.2170 4.0977 2.4232 34 1 4.5901 6.0029 5.1910 35 1 2.0084 4.4975 4.6901 36 1 2.7950 7.4544 4.0008 37 1 1.1504 6.6729 3.7065 38 1 0.9184 6.2261 6.1926 39 1 2.5628 7.0072 6.4869 40 1 2.5452 2.2844 3.6209 41 1 2.1178 1.5901 1.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490976107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:48 Heat of formation + Delta-G solvation = 19.808836 kcal Electronic energy + Delta-G solvation = -27955.725847 eV Core-core repulsion = 23931.106062 eV Total energy + Delta-G solvation = -4024.619785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42464 -39.30837 -38.70180 -38.24794 -37.32692 -36.99585 -34.38281 -33.23846 -33.08366 -32.43555 -32.16963 -28.43346 -27.22085 -24.81249 -23.95367 -23.14767 -22.96149 -21.43742 -20.77010 -19.95621 -19.22948 -18.65779 -18.33116 -18.24502 -17.40536 -17.04564 -16.60162 -16.16712 -16.05995 -15.94049 -15.63895 -15.40759 -15.25633 -14.79409 -14.38227 -14.15001 -14.01270 -13.85185 -13.68838 -13.51838 -13.29712 -13.20505 -13.11579 -13.03456 -12.87711 -12.50661 -12.30300 -12.21250 -12.17848 -11.98540 -11.28798 -11.26880 -11.10699 -10.69206 -10.63836 -10.29374 -10.18010 -10.00547 -9.98680 -8.58947 -5.93328 -0.77063 -0.49028 0.19725 1.27551 1.38858 1.48452 1.66288 1.95007 2.01262 2.23203 2.30708 2.45745 2.71248 2.75946 3.01821 3.09154 3.26153 3.67818 3.80313 3.80472 3.87894 3.94185 4.04573 4.12471 4.13824 4.20021 4.35749 4.46201 4.51940 4.84049 4.88361 4.89538 4.92784 4.96304 5.12650 5.24999 5.30264 5.32766 5.34491 5.35432 5.68044 5.89356 6.04640 6.28078 6.97218 7.10062 7.22070 7.81312 8.37784 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.002924 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.067257 B = 9573.529946 C = 9948.792733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.154 4.154 3 C 0.199 3.801 4 N -0.423 5.423 5 C -0.374 4.374 6 H 0.079 0.921 7 C 0.028 3.972 8 N -0.827 5.827 9 Si 0.972 3.028 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.276 1.276 13 C 0.445 3.555 14 O -0.629 6.629 15 C -0.056 4.056 16 C -0.111 4.111 17 C -0.014 4.014 18 C -0.674 4.674 19 S 2.732 3.268 20 O -0.974 6.974 21 O -0.978 6.978 22 N -1.075 6.075 23 C 0.058 3.942 24 C -0.189 4.189 25 C -0.176 4.176 26 C -0.018 4.018 27 C -0.141 4.141 28 H 0.237 0.763 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.281 0.719 32 H 0.134 0.866 33 H 0.168 0.832 34 H 0.429 0.571 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.169 0.831 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 10.264 16.964 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.155 4.155 3 C 0.078 3.922 4 N -0.137 5.137 5 C -0.500 4.500 6 H 0.097 0.903 7 C -0.181 4.181 8 N -0.460 5.460 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.194 1.194 12 H -0.201 1.201 13 C 0.237 3.763 14 O -0.519 6.519 15 C -0.060 4.060 16 C -0.131 4.131 17 C -0.033 4.033 18 C -0.760 4.760 19 S 2.820 3.180 20 O -0.963 6.963 21 O -0.968 6.968 22 N -0.834 5.834 23 C -0.049 4.049 24 C -0.228 4.228 25 C -0.216 4.216 26 C -0.037 4.037 27 C -0.161 4.161 28 H 0.253 0.747 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.186 0.814 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.187 0.813 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.328 9.697 17.117 19.675 hybrid contribution -0.034 -0.281 -2.119 2.138 sum -0.363 9.416 14.997 17.712 Atomic orbital electron populations 1.25158 0.96258 1.01874 1.01528 1.22899 0.94415 0.99136 0.99070 1.19250 0.85656 0.97030 0.90249 1.43890 1.47650 1.15341 1.06819 1.19445 1.52206 0.94692 0.83623 0.90288 1.25954 0.93961 0.96355 1.01879 1.70309 1.23350 1.12248 1.40090 0.85292 0.79068 0.77777 0.78363 1.19270 1.19436 1.20131 1.18443 0.85786 0.83035 0.89021 1.90574 1.60230 1.53868 1.47253 1.20406 0.96286 0.96610 0.92656 1.21359 0.96343 0.97709 0.97649 1.21036 0.97549 0.94121 0.90634 1.31132 1.04578 1.15341 1.24987 1.00747 0.72036 0.72483 0.72690 1.93570 1.73193 1.64568 1.65007 1.93566 1.30847 1.85913 1.86492 1.54816 1.14109 1.27405 1.87098 1.21600 0.79526 0.96640 1.07177 1.23492 1.03913 0.98642 0.96754 1.23485 1.03082 1.01475 0.93521 1.21084 0.94845 0.91472 0.96307 1.21897 1.00223 1.00805 0.93140 0.74674 0.89434 0.86629 0.90788 0.84818 0.81428 0.73320 0.84178 0.87777 0.87481 0.86786 0.87439 0.81326 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.78 19.25 74.32 1.43 -7.35 16 2 C -0.15 -6.62 9.61 31.13 0.30 -6.32 16 3 C 0.20 8.79 4.80 84.57 0.41 9.19 16 4 N -0.42 -21.75 2.67 -648.83 -1.73 -23.49 16 5 C -0.37 -20.92 9.12 84.10 0.77 -20.15 16 6 H 0.08 4.85 7.42 -2.91 -0.02 4.83 16 7 C 0.03 1.41 5.01 84.96 0.43 1.84 16 8 N -0.83 -40.53 9.03 21.68 0.20 -40.33 16 9 Si 0.97 40.58 29.67 68.60 2.04 42.62 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.45 22.55 7.31 86.75 0.63 23.18 16 14 O -0.63 -36.61 16.51 -4.00 -0.07 -36.68 16 15 C -0.06 -2.20 5.41 -20.09 -0.11 -2.31 16 16 C -0.11 -3.72 9.63 22.54 0.22 -3.51 16 17 C -0.01 -0.38 9.50 22.23 0.21 -0.16 16 18 C -0.67 -16.34 5.95 22.34 0.13 -16.21 16 19 S 2.73 56.07 5.71 -56.49 -0.32 55.75 16 20 O -0.97 -24.56 17.02 -128.00 -2.18 -26.74 16 21 O -0.98 -24.42 17.27 -128.00 -2.21 -26.63 16 22 N -1.07 -15.07 6.04 -169.38 -1.02 -16.09 16 23 C 0.06 0.78 6.47 44.99 0.29 1.07 16 24 C -0.19 -2.14 10.46 30.60 0.32 -1.82 16 25 C -0.18 -1.76 10.46 30.60 0.32 -1.44 16 26 C -0.02 -0.47 9.50 22.23 0.21 -0.25 16 27 C -0.14 -4.65 7.36 22.54 0.17 -4.49 16 28 H 0.24 6.83 7.80 -4.41 -0.03 6.80 16 29 H 0.09 4.06 6.53 -2.38 -0.02 4.05 16 30 H 0.12 4.38 3.83 -2.39 -0.01 4.37 16 31 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 32 H 0.13 4.53 8.04 -2.91 -0.02 4.50 16 33 H 0.17 3.39 7.60 -2.91 -0.02 3.37 16 34 H 0.43 4.12 8.96 -96.74 -0.87 3.25 16 35 H 0.14 1.77 8.11 -2.39 -0.02 1.75 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.17 3.32 7.60 -2.91 -0.02 3.30 16 41 H 0.15 4.91 4.51 -2.91 -0.01 4.90 16 Total: -1.00 -75.13 366.37 0.65 -74.48 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.23 Total: 25.84 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 5.72 Total: -28.74 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.56 Total: -79.91 kcal Atomic # 8 Polarization: -85.59 SS G_CDS: -4.45 Total: -90.04 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.04 Total: 42.62 kcal Atomic # 16 Polarization: 56.07 SS G_CDS: -0.32 Total: 55.75 kcal Total: -75.13 0.65 -74.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490976107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.286 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds