Wall clock time and date at job start Wed Apr 1 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47092 * 299.99669 * 3 2 1 6 6 H 1.48500 * 109.47512 * 59.99850 * 3 2 1 7 7 C 1.38809 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99748 * 163.06736 * 7 2 1 9 9 N 1.36940 * 120.00176 * 343.06850 * 7 2 1 10 10 C 1.46925 * 120.63066 * 331.85116 * 9 7 2 11 11 C 1.53192 * 108.77408 * 233.58588 * 10 9 7 12 12 C 1.53042 * 109.31350 * 305.36606 * 11 10 9 13 13 N 1.46500 * 109.46218 * 181.38675 * 12 11 10 14 14 C 1.34771 * 120.00031 * 154.99622 * 13 12 11 15 15 O 1.21696 * 120.00227 * 0.02562 * 14 13 12 16 16 C 1.46588 * 120.00146 * 179.97438 * 14 13 12 17 17 C 1.36644 * 125.46144 * 179.97438 * 16 14 13 18 18 C 1.37478 * 113.29726 * 179.81134 * 17 16 14 19 19 C 1.33816 * 115.09775 * 0.42336 * 18 17 16 20 20 C 1.50701 * 124.51818 * 179.85464 * 19 18 17 21 21 F 1.39899 * 109.47348 * 89.72682 * 20 19 18 22 22 F 1.39901 * 109.47131 * 329.72428 * 20 19 18 23 23 F 1.39901 * 109.46722 * 209.72761 * 20 19 18 24 24 S 1.70615 * 110.95763 * 359.59238 * 19 18 17 25 25 C 1.53036 * 109.53786 * 61.36257 * 12 11 10 26 26 C 1.46925 * 120.62814 * 151.82909 * 9 7 2 27 27 H 0.96997 * 120.00211 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.58817 * 113.80051 * 10 9 7 29 29 H 1.08999 * 109.70534 * 353.44348 * 10 9 7 30 30 H 1.09006 * 109.49836 * 185.41415 * 11 10 9 31 31 H 1.08999 * 109.52570 * 65.33120 * 11 10 9 32 32 H 1.09007 * 109.45932 * 301.35793 * 12 11 10 33 33 H 0.97001 * 119.99857 * 334.99871 * 13 12 11 34 34 H 1.07994 * 123.34987 * 0.03908 * 17 16 14 35 35 H 1.07994 * 122.45088 * 180.26885 * 18 17 16 36 36 H 1.08999 * 109.49807 * 58.59364 * 25 12 11 37 37 H 1.08998 * 109.49543 * 178.68437 * 25 12 11 38 38 H 1.09008 * 109.58524 * 246.19929 * 26 9 7 39 39 H 1.08995 * 109.59131 * 6.47979 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2261 -2.3398 1.2681 11 6 0.4976 -3.3187 2.4148 12 6 0.8122 -4.7005 1.8368 13 7 1.0398 -5.6471 2.9315 14 6 0.8364 -6.9650 2.7360 15 8 0.4641 -7.3687 1.6500 16 6 1.0647 -7.9123 3.8311 17 6 0.8937 -9.2659 3.7570 18 6 1.1836 -9.9158 4.9333 19 6 1.5700 -9.1229 5.9396 20 6 1.9348 -9.6094 7.3185 21 9 3.3030 -9.8974 7.3646 22 9 1.2046 -10.7657 7.6133 23 9 1.6352 -8.6166 8.2575 24 16 1.6014 -7.4885 5.4511 25 6 2.0675 -4.6171 0.9655 26 6 1.8140 -3.6529 -0.1975 27 1 -0.4850 0.8400 0.0004 28 1 -0.6769 -2.6405 0.7370 29 1 0.0967 -1.3345 1.6689 30 1 -0.3830 -3.3836 3.0539 31 1 1.3471 -2.9674 3.0004 32 1 -0.0280 -5.0408 1.2313 33 1 1.3369 -5.3254 3.7970 34 1 0.5670 -9.7750 2.8623 35 1 1.1029 -10.9876 5.0382 36 1 2.9025 -4.2533 1.5643 37 1 2.3043 -5.6061 0.5732 38 1 1.0403 -4.0607 -0.8482 39 1 2.7333 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586776125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:03 Heat of formation + Delta-G solvation = -132.010406 kcal Electronic energy + Delta-G solvation = -27555.045519 eV Core-core repulsion = 22981.985618 eV Total energy + Delta-G solvation = -4573.059901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.64183 -48.17098 -48.11467 -40.07038 -38.38849 -37.27236 -34.59053 -32.40800 -31.44708 -30.21855 -29.51354 -27.18976 -25.09520 -24.08273 -22.64412 -22.26713 -21.13972 -20.34656 -19.81616 -19.17279 -18.99501 -18.43195 -17.20736 -16.89450 -16.34554 -15.74899 -15.22167 -15.01620 -14.98932 -14.87773 -14.64839 -14.54629 -14.27695 -14.26912 -13.90116 -13.74538 -13.63256 -13.45017 -13.05489 -12.97868 -12.73938 -12.68146 -12.43041 -11.58299 -11.54035 -11.19599 -10.96812 -10.77523 -10.56800 -10.37017 -10.19413 -10.08670 -9.82639 -9.65351 -9.59725 -9.19128 -8.90402 -8.51395 -6.73855 -5.84095 -3.26592 -0.27347 0.64848 1.13634 1.74431 2.12852 2.96615 3.00915 3.16591 3.34201 3.42489 3.44489 3.65471 3.84089 4.45790 4.49581 4.61849 4.80226 5.23621 5.25665 5.32462 5.41166 5.48677 5.51171 5.68305 5.76332 5.98822 6.10310 6.22198 6.43306 6.46264 6.48967 6.71187 6.76491 6.92253 7.24743 7.38048 7.57441 7.75987 8.03449 8.39857 9.16046 9.78986 10.35656 11.24927 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.002154 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.366385 B =12998.600685 C =13600.027601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.148 4.148 12 C 0.150 3.850 13 N -0.715 5.715 14 C 0.582 3.418 15 O -0.519 6.519 16 C -0.225 4.225 17 C -0.073 4.073 18 C -0.072 4.072 19 C -0.337 4.337 20 C 0.544 3.456 21 F -0.169 7.169 22 F -0.168 7.168 23 F -0.172 7.172 24 S 0.287 5.713 25 C -0.140 4.140 26 C 0.148 3.852 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.393 0.607 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -19.830 15.413 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.048 3.952 13 N -0.365 5.365 14 C 0.366 3.634 15 O -0.396 6.396 16 C -0.347 4.347 17 C -0.105 4.105 18 C -0.106 4.106 19 C -0.457 4.457 20 C 0.488 3.512 21 F -0.150 7.150 22 F -0.149 7.149 23 F -0.153 7.153 24 S 0.558 5.442 25 C -0.180 4.180 26 C 0.021 3.979 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.227 0.773 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.538 -18.551 15.381 24.231 hybrid contribution 0.253 -0.598 0.086 0.655 sum 2.791 -19.148 15.467 24.773 Atomic orbital electron populations 1.70031 1.05262 1.25496 1.53945 1.25062 0.95304 0.98481 1.00815 0.86224 0.79372 0.83884 0.77299 1.20247 1.21700 1.21545 1.19228 0.92620 0.84704 1.41636 0.91555 1.44106 1.35807 1.01688 1.49945 1.20742 0.88961 0.97912 0.87588 1.22573 1.00717 0.94469 1.01032 1.21183 0.98943 0.88085 0.86997 1.46317 1.68029 1.06048 1.16091 1.16889 0.78286 0.81951 0.86265 1.90865 1.46161 1.78031 1.24555 1.25295 1.11584 0.99027 0.98832 1.20760 0.98859 0.91577 0.99294 1.19961 0.97769 1.02062 0.90838 1.24391 1.19361 1.02956 0.98987 1.17162 0.74886 0.75363 0.83754 1.93259 1.31574 1.93489 1.96720 1.93223 1.77408 1.50238 1.94055 1.93240 1.93020 1.61384 1.67659 1.83206 1.59053 1.00298 1.01667 1.22398 0.96946 0.99767 0.98934 1.20871 0.98055 0.86488 0.92525 0.93605 0.95984 0.88891 0.92552 0.92012 0.89509 0.77326 0.81590 0.82488 0.92149 0.92574 0.96081 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.19 55.49 0.62 -24.95 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.37 2.99 -172.32 -0.52 -14.89 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.15 -2.57 5.55 -26.61 -0.15 -2.72 16 12 C 0.15 2.48 2.41 -67.89 -0.16 2.31 16 13 N -0.72 -9.53 5.07 -55.10 -0.28 -9.81 16 14 C 0.58 8.05 7.75 -12.90 -0.10 7.95 16 15 O -0.52 -8.97 16.50 5.19 0.09 -8.89 16 16 C -0.23 -2.40 6.45 -36.79 -0.24 -2.64 16 17 C -0.07 -0.67 10.01 -40.43 -0.40 -1.07 16 18 C -0.07 -0.55 9.64 -41.41 -0.40 -0.95 16 19 C -0.34 -2.84 5.75 -35.86 -0.21 -3.04 16 20 C 0.54 4.59 3.50 36.01 0.13 4.71 16 21 F -0.17 -1.51 17.30 2.25 0.04 -1.47 16 22 F -0.17 -1.41 16.88 2.25 0.04 -1.37 16 23 F -0.17 -1.51 16.97 2.25 0.04 -1.48 16 24 S 0.29 2.42 21.74 -107.50 -2.34 0.08 16 25 C -0.14 -2.44 5.65 -26.62 -0.15 -2.59 16 26 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 27 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 2.35 6.07 -51.93 -0.31 2.04 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.59 7.58 -51.92 -0.39 1.20 16 33 H 0.39 4.26 7.72 -40.82 -0.31 3.94 16 34 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.16 0.86 7.96 -52.49 -0.42 0.44 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -30.12 352.95 -8.34 -38.46 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.36 Total: 0.80 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.96 Total: 2.03 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.17 Total: -49.64 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.12 Total: -4.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.34 Total: 0.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.12 -8.34 -38.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586776125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.549 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds