Wall clock time and date at job start Wed Apr 1 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47353 * 2 1 4 4 C 1.35678 * 117.00207 * 184.30746 * 3 2 1 5 5 C 1.38771 * 119.63918 * 185.48456 * 4 3 2 6 6 C 1.38591 * 119.27657 * 179.97438 * 5 4 3 7 7 C 1.38506 * 118.56766 * 359.72748 * 6 5 4 8 8 C 1.38979 * 119.21846 * 0.53233 * 7 6 5 9 9 N 1.38994 * 119.67284 * 179.73037 * 8 7 6 10 10 S 1.65602 * 120.00334 * 197.14394 * 9 8 7 11 11 O 1.42090 * 106.40430 * 311.77813 * 10 9 8 12 12 O 1.42100 * 106.40148 * 178.85193 * 10 9 8 13 13 C 1.76201 * 107.21462 * 65.31696 * 10 9 8 14 14 C 1.38651 * 119.87663 * 273.39932 * 13 10 9 15 15 C 1.38614 * 120.50591 * 180.02562 * 14 13 10 16 16 C 1.37639 * 120.24579 * 0.02562 * 15 14 13 17 17 C 1.40699 * 119.74309 * 359.97438 * 16 15 14 18 18 C 1.41405 * 120.24196 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99889 * 327.83916 * 18 17 16 20 20 C 1.39946 * 119.99644 * 147.84021 * 18 17 16 21 21 N 1.30824 * 120.00166 * 358.37650 * 20 18 17 22 22 Si 1.86798 * 119.99755 * 178.38050 * 20 18 17 23 23 H 1.48502 * 109.47178 * 89.99738 * 22 20 18 24 24 H 1.48497 * 109.47151 * 209.99995 * 22 20 18 25 25 H 1.48502 * 109.47042 * 329.99995 * 22 20 18 26 26 C 1.37597 * 119.87614 * 93.42243 * 13 10 9 27 27 N 1.32325 * 119.63610 * 5.45464 * 4 3 2 28 28 H 1.09007 * 109.47336 * 59.99557 * 1 2 3 29 29 H 1.08992 * 109.47614 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47165 * 300.00041 * 1 2 3 31 31 H 1.09002 * 109.46722 * 240.00045 * 2 1 3 32 32 H 1.09004 * 109.46862 * 120.00302 * 2 1 3 33 33 H 1.08002 * 120.36783 * 359.95305 * 5 4 3 34 34 H 1.07994 * 120.72011 * 179.97438 * 6 5 4 35 35 H 1.07990 * 120.39278 * 180.25847 * 7 6 5 36 36 H 0.97007 * 119.99833 * 17.15158 * 9 8 7 37 37 H 1.08003 * 119.74913 * 0.02562 * 14 13 10 38 38 H 1.07995 * 119.87770 * 179.97438 * 15 14 13 39 39 H 1.08001 * 120.12988 * 180.02562 * 16 15 14 40 40 H 0.97003 * 119.99501 * 179.97438 * 21 20 18 41 41 H 1.08004 * 120.12800 * 0.24696 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5261 -0.0908 5 6 3.8792 2.8034 0.0192 6 6 5.2510 2.9775 -0.0742 7 6 6.0484 1.8620 -0.2695 8 6 5.4513 0.6115 -0.3764 9 7 6.2421 -0.5136 -0.5782 10 16 5.5582 -1.9193 -1.1247 11 8 4.4103 -2.1469 -0.3187 12 8 6.6174 -2.8580 -1.2516 13 6 4.9676 -1.6121 -2.7561 14 6 3.6998 -1.0829 -2.9435 15 6 3.2219 -0.8366 -4.2211 16 6 4.0031 -1.1160 -5.3193 17 6 5.2913 -1.6531 -5.1412 18 6 6.1030 -1.9436 -6.2621 19 1 5.6494 -2.2596 -7.1899 20 6 7.4940 -1.8217 -6.1690 21 7 8.0413 -1.4084 -5.0549 22 14 8.5692 -2.2488 -7.6356 23 1 8.7681 -1.0386 -8.4728 24 1 9.8858 -2.7417 -7.1572 25 1 7.9084 -3.3059 -8.4426 26 6 5.7662 -1.8985 -3.8394 27 7 4.1362 0.4805 -0.2827 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2307 3.6528 0.1754 34 1 5.6891 3.9612 0.0077 35 1 7.1211 1.9631 -0.3423 36 1 7.1947 -0.4754 -0.3987 37 1 3.0798 -0.8611 -2.0874 38 1 2.2327 -0.4247 -4.3553 39 1 3.6290 -0.9229 -6.3139 40 1 9.0056 -1.3243 -4.9904 41 1 6.7517 -2.3147 -3.6914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589585624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:02 Heat of formation + Delta-G solvation = -51.418221 kcal Electronic energy + Delta-G solvation = -28929.110659 eV Core-core repulsion = 24901.402237 eV Total energy + Delta-G solvation = -4027.708422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59143 -38.18724 -37.65322 -36.57268 -35.24896 -34.90527 -33.75826 -32.22708 -31.51373 -30.25050 -29.58983 -28.82828 -25.47751 -24.07207 -23.14859 -22.24858 -21.76688 -21.14567 -19.18075 -18.81907 -17.97936 -17.09431 -16.69288 -16.30471 -15.95924 -15.91563 -15.56325 -15.06699 -14.80182 -14.56641 -14.12872 -13.74760 -13.47678 -13.38563 -13.26062 -12.72875 -12.67190 -12.48451 -12.22418 -11.95742 -11.75823 -11.54886 -11.46177 -11.32523 -11.28415 -11.21340 -11.16163 -11.04958 -10.79262 -10.64970 -10.31350 -9.89953 -9.64345 -9.52021 -9.44752 -9.24325 -8.14941 -8.01934 -7.53011 -6.81548 -4.55560 0.90453 1.35257 1.39120 2.15538 2.71009 3.02730 3.04711 3.06807 3.07694 3.32991 3.85643 3.86959 4.17552 4.31852 4.57166 4.88108 5.03579 5.13440 5.16134 5.19347 5.27593 5.33018 5.39167 5.55618 5.71558 5.84275 5.92407 6.03180 6.06090 6.15497 6.27634 6.34494 6.43948 6.51123 6.80229 6.85497 6.98786 7.13261 7.21876 7.38079 7.47711 7.62327 7.79459 7.94794 8.00943 8.35140 8.69674 8.73810 10.13576 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.003977 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.276491 B = 7038.471713 C = 7421.556462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.306 6.306 4 C 0.366 3.634 5 C -0.228 4.228 6 C -0.014 4.014 7 C -0.238 4.238 8 C 0.429 3.571 9 N -1.036 6.036 10 S 2.680 3.320 11 O -0.943 6.943 12 O -0.962 6.962 13 C -0.644 4.644 14 C -0.134 4.134 15 C -0.119 4.119 16 C -0.170 4.170 17 C 0.085 3.915 18 C -0.463 4.463 19 H 0.080 0.920 20 C 0.070 3.930 21 N -0.812 5.812 22 Si 0.919 3.081 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.262 1.262 26 C -0.047 4.047 27 N -0.559 5.559 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.432 0.568 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.283 0.717 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 7.672 9.388 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.213 6.213 4 C 0.187 3.813 5 C -0.250 4.250 6 C -0.040 4.040 7 C -0.263 4.263 8 C 0.196 3.804 9 N -0.781 5.781 10 S 2.777 3.223 11 O -0.933 6.933 12 O -0.953 6.953 13 C -0.737 4.737 14 C -0.155 4.155 15 C -0.139 4.139 16 C -0.190 4.190 17 C 0.082 3.918 18 C -0.493 4.493 19 H 0.098 0.902 20 C -0.146 4.146 21 N -0.439 5.439 22 Si 0.743 3.257 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.069 4.069 27 N -0.290 5.290 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.268 0.732 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.881 6.176 9.921 12.665 hybrid contribution 1.347 0.901 -1.273 2.061 sum -3.533 7.077 8.648 11.720 Atomic orbital electron populations 1.21819 0.93377 1.02858 1.02804 1.22820 0.94315 0.80542 1.04062 1.86199 1.16831 1.31224 1.87085 1.19311 0.83595 0.88796 0.89639 1.20874 0.95782 0.95709 1.12627 1.21146 0.92130 0.98676 0.92001 1.21429 1.01653 0.91257 1.11946 1.17374 0.86487 0.86259 0.90285 1.53731 1.19371 1.27379 1.77624 1.02160 0.73356 0.71658 0.75104 1.93531 1.49732 1.82419 1.67602 1.93580 1.56767 1.57232 1.87690 1.29779 1.05310 1.19264 1.19360 1.20302 0.94245 1.04016 0.96915 1.20663 0.98323 1.01722 0.93143 1.21371 0.97057 1.03733 0.96887 1.17712 0.91368 0.89801 0.92930 1.19554 0.90900 1.40739 0.98124 0.90168 1.25907 0.98778 0.92529 0.97385 1.69647 1.13213 1.34929 1.26075 0.86133 0.78985 0.79616 0.80933 1.19479 1.19999 1.18554 1.21489 0.98745 0.95386 0.91252 1.66744 1.04420 1.34180 1.23655 0.91782 0.90302 0.92051 0.90132 0.91176 0.84205 0.83945 0.84292 0.73150 0.86748 0.88516 0.88165 0.90574 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.26 16 2 C 0.06 0.83 6.13 37.16 0.23 1.06 16 3 O -0.31 -4.61 10.11 -18.74 -0.19 -4.80 16 4 C 0.37 5.75 7.48 -17.14 -0.13 5.62 16 5 C -0.23 -2.87 10.03 -39.25 -0.39 -3.26 16 6 C -0.01 -0.16 10.16 -39.35 -0.40 -0.55 16 7 C -0.24 -3.10 9.95 -39.21 -0.39 -3.49 16 8 C 0.43 7.03 7.32 -155.01 -1.14 5.90 16 9 N -1.04 -17.19 5.82 31.11 0.18 -17.00 16 10 S 2.68 54.99 5.49 -107.50 -0.59 54.40 16 11 O -0.94 -20.12 15.85 -57.17 -0.91 -21.02 16 12 O -0.96 -21.73 17.18 -57.17 -0.98 -22.71 16 13 C -0.64 -14.98 5.90 -39.66 -0.23 -15.21 16 14 C -0.13 -2.98 9.14 -39.29 -0.36 -3.34 16 15 C -0.12 -2.62 10.02 -39.66 -0.40 -3.01 16 16 C -0.17 -4.03 9.80 -38.87 -0.38 -4.41 16 17 C 0.09 2.22 5.55 -106.82 -0.59 1.63 16 18 C -0.46 -11.95 9.06 -37.74 -0.34 -12.29 16 19 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 20 C 0.07 1.71 5.38 -17.34 -0.09 1.62 16 21 N -0.81 -20.48 10.65 55.55 0.59 -19.88 16 22 Si 0.92 18.45 29.56 -169.99 -5.02 13.43 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.05 -1.22 8.12 -38.87 -0.32 -1.54 16 27 N -0.56 -9.82 5.79 -12.51 -0.07 -9.89 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.08 1.33 5.35 -51.93 -0.28 1.05 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.43 5.68 8.86 -34.47 -0.31 5.38 16 37 H 0.11 2.38 4.11 -52.48 -0.22 2.16 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.15 3.90 5.63 -52.48 -0.30 3.61 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -31.69 359.05 -10.58 -42.28 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -4.45 Total: 12.36 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -4.55 Total: -32.56 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.70 Total: -46.78 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -2.08 Total: -48.53 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.59 Total: 54.40 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.69 -10.58 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589585624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.142 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds