Wall clock time and date at job start Wed Apr 1 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35782 * 116.99744 * 2 1 4 4 C 1.38894 * 119.59954 * 179.72706 * 3 2 1 5 5 C 1.38341 * 119.18412 * 179.74844 * 4 3 2 6 6 C 1.39383 * 118.42373 * 0.51878 * 5 4 3 7 7 N 1.39984 * 120.42767 * 179.72271 * 6 5 4 8 8 S 1.65602 * 119.99824 * 35.02465 * 7 6 5 9 9 O 1.42097 * 106.40414 * 178.53870 * 8 7 6 10 10 O 1.42105 * 106.40136 * 311.46096 * 8 7 6 11 11 C 1.76197 * 107.21885 * 64.99604 * 8 7 6 12 12 C 1.38662 * 119.87546 * 269.72854 * 11 8 7 13 13 C 1.38615 * 120.49804 * 179.72402 * 12 11 8 14 14 C 1.37643 * 120.24993 * 0.55107 * 13 12 11 15 15 C 1.40704 * 119.74138 * 359.72338 * 14 13 12 16 16 C 1.41394 * 120.24251 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00446 * 204.38326 * 16 15 14 18 18 C 1.39955 * 119.99817 * 24.38210 * 16 15 14 19 19 N 1.30823 * 119.99849 * 17.87041 * 18 16 15 20 20 Si 1.86797 * 119.99605 * 197.86779 * 18 16 15 21 21 H 1.48500 * 109.47450 * 90.00476 * 20 18 16 22 22 H 1.48505 * 109.46783 * 209.99971 * 20 18 16 23 23 H 1.48500 * 109.47641 * 329.99711 * 20 18 16 24 24 C 1.37603 * 119.87546 * 90.00090 * 11 8 7 25 25 C 1.38673 * 119.14480 * 359.74560 * 6 5 4 26 26 C 1.50705 * 119.63578 * 179.97438 * 25 6 5 27 27 N 1.31973 * 120.73039 * 359.97438 * 25 6 5 28 28 H 1.09002 * 109.46767 * 299.99609 * 1 2 3 29 29 H 1.08999 * 109.47488 * 59.99841 * 1 2 3 30 30 H 1.09003 * 109.47325 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.40295 * 0.02693 * 4 3 2 32 32 H 1.08000 * 120.78513 * 180.26208 * 5 4 3 33 33 H 0.97000 * 120.00093 * 215.02050 * 7 6 5 34 34 H 1.07999 * 119.75019 * 359.97438 * 12 11 8 35 35 H 1.08001 * 119.88029 * 180.25802 * 13 12 11 36 36 H 1.08004 * 120.13081 * 179.75485 * 14 13 12 37 37 H 0.97004 * 119.99534 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.12250 * 359.97438 * 24 11 8 39 39 H 1.08994 * 109.47119 * 269.97921 * 26 25 6 40 40 H 1.08998 * 109.46744 * 29.98423 * 26 25 6 41 41 H 1.08999 * 109.46653 * 149.97495 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4329 1.2729 0.0058 5 6 4.0520 2.5101 0.0004 6 6 3.2526 3.6519 0.0005 7 7 3.8349 4.9249 0.0010 8 16 5.2476 5.1896 -0.8216 9 8 5.5552 6.5672 -0.6580 10 8 6.1338 4.1451 -0.4435 11 6 4.9055 4.9560 -2.5342 12 6 5.0553 3.7006 -3.1035 13 6 4.7842 3.5011 -4.4482 14 6 4.3736 4.5523 -5.2362 15 6 4.2237 5.8318 -4.6704 16 6 3.8020 6.9190 -5.4700 17 1 4.0521 7.9296 -5.1827 18 6 3.0606 6.6856 -6.6338 19 7 2.4610 5.5359 -6.8078 20 14 2.9270 8.0156 -7.9386 21 1 4.0371 7.8660 -8.9135 22 1 1.6271 7.8872 -8.6451 23 1 3.0104 9.3511 -7.2946 24 6 4.4962 6.0214 -3.3029 25 6 1.8731 3.5106 0.0005 26 6 0.9983 4.7378 0.0011 27 7 1.3178 2.3134 -0.0001 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0211 0.3672 0.0098 32 1 5.1291 2.5892 0.0004 33 1 3.4109 5.6520 0.4831 34 1 5.3816 2.8711 -2.4938 35 1 4.9002 2.5181 -4.8804 36 1 4.1668 4.3955 -6.2846 37 1 1.9468 5.3743 -7.6143 38 1 4.3841 6.9992 -2.8582 39 1 0.7872 5.0329 1.0289 40 1 1.5123 5.5505 -0.5121 41 1 0.0629 4.5173 -0.5131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589586788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:28 Heat of formation + Delta-G solvation = -54.788293 kcal Electronic energy + Delta-G solvation = -28416.379381 eV Core-core repulsion = 24388.524822 eV Total energy + Delta-G solvation = -4027.854559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.71837 -38.32920 -37.70244 -36.92606 -35.57250 -35.04947 -33.90176 -32.98497 -30.14244 -29.95911 -29.86989 -28.24972 -26.26176 -25.54242 -22.95421 -22.27302 -21.99785 -21.05188 -19.38109 -18.39768 -18.10931 -17.72594 -17.07357 -16.50918 -16.00939 -15.95509 -15.26803 -15.02650 -14.71296 -14.46547 -14.22580 -13.96745 -13.58943 -13.52591 -13.42103 -12.65308 -12.62650 -12.48199 -12.28458 -12.11022 -12.00679 -11.81358 -11.79336 -11.62206 -11.48502 -11.43173 -11.38200 -11.08500 -10.94942 -10.69980 -10.61726 -9.84397 -9.69348 -9.58415 -9.43019 -9.39695 -8.13467 -7.89732 -7.76409 -6.97285 -4.58654 0.67927 1.18233 1.36241 2.09033 2.58359 2.97308 3.01251 3.03009 3.10744 3.30690 3.74467 3.79270 4.00957 4.21416 4.35871 4.70175 4.75328 4.95809 5.15355 5.24801 5.27987 5.35234 5.39636 5.56669 5.58836 5.62330 5.70623 5.97644 5.99357 6.08121 6.10025 6.21233 6.47905 6.58655 6.69944 6.75691 6.95535 7.00958 7.14906 7.27418 7.30476 7.66783 7.75155 7.88457 7.89346 8.34877 8.61805 8.66036 9.98108 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.003848 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.397810 B = 7273.882281 C = 8449.421178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.303 3.697 4 C -0.166 4.166 5 C -0.086 4.086 6 C 0.084 3.916 7 N -1.049 6.049 8 S 2.682 3.318 9 O -0.961 6.961 10 O -0.967 6.967 11 C -0.629 4.629 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.115 4.115 15 C 0.092 3.908 16 C -0.460 4.460 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.793 5.793 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.124 4.124 25 C 0.153 3.847 26 C -0.108 4.108 27 N -0.521 5.521 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.182 0.818 33 H 0.423 0.577 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -5.731 10.463 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.123 3.877 4 C -0.187 4.187 5 C -0.114 4.114 6 C -0.015 4.015 7 N -0.797 5.797 8 S 2.780 3.220 9 O -0.951 6.951 10 O -0.957 6.957 11 C -0.722 4.722 12 C -0.164 4.164 13 C -0.139 4.139 14 C -0.134 4.134 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.102 0.898 18 C -0.143 4.143 19 N -0.418 5.418 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.146 4.146 25 C 0.013 3.987 26 C -0.165 4.165 27 N -0.245 5.245 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.164 0.836 32 H 0.199 0.801 33 H 0.259 0.741 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.931 -6.029 10.646 12.851 hybrid contribution -0.266 0.776 -1.184 1.440 sum -4.197 -5.254 9.462 11.608 Atomic orbital electron populations 1.22812 0.77588 1.02599 1.02428 1.86243 1.22632 1.24493 1.88318 1.19754 0.89402 0.84432 0.94063 1.20909 0.91618 0.99044 1.07101 1.22380 1.03245 0.90101 0.95663 1.17949 0.92769 0.84783 1.06041 1.53414 1.45781 1.15009 1.65456 1.02047 0.72125 0.73039 0.74765 1.93560 1.81744 1.32982 1.86847 1.93417 1.61605 1.57566 1.83069 1.29511 1.19889 1.01792 1.21033 1.20083 1.06389 0.93798 0.96180 1.20810 1.01097 0.98010 0.94002 1.21669 0.99038 0.92925 0.99807 1.17666 0.89673 0.93285 0.90503 1.19635 1.29450 0.94589 1.05278 0.89822 1.25942 0.93033 0.96638 0.98686 1.69781 1.22035 1.23878 1.26072 0.86236 0.78429 0.81449 0.80265 1.19111 1.20184 1.18384 1.20755 1.03694 0.95772 0.94373 1.20740 0.90248 0.92318 0.95429 1.20735 0.99622 0.93242 1.02914 1.67044 1.40320 0.97933 1.19240 0.92522 0.92266 0.88929 0.83611 0.80077 0.74058 0.87598 0.88320 0.85687 0.90513 0.86979 0.90312 0.89958 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.15 10.48 -19.06 -0.20 -4.35 16 3 C 0.30 4.49 7.49 -17.16 -0.13 4.36 16 4 C -0.17 -2.32 10.03 -39.30 -0.39 -2.71 16 5 C -0.09 -1.29 9.11 -39.12 -0.36 -1.64 16 6 C 0.08 1.26 6.34 -83.55 -0.53 0.73 16 7 N -1.05 -15.03 5.20 32.52 0.17 -14.86 16 8 S 2.68 47.64 5.58 -107.50 -0.60 47.04 16 9 O -0.96 -18.93 17.27 -57.17 -0.99 -19.92 16 10 O -0.97 -17.82 13.99 -57.17 -0.80 -18.61 16 11 C -0.63 -13.29 5.90 -39.66 -0.23 -13.52 16 12 C -0.14 -3.04 9.53 -39.29 -0.37 -3.41 16 13 C -0.12 -2.66 10.02 -39.66 -0.40 -3.05 16 14 C -0.11 -2.81 8.70 -38.87 -0.34 -3.15 16 15 C 0.09 2.33 5.58 -106.83 -0.60 1.74 16 16 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 16 17 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 18 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 19 N -0.79 -19.33 10.95 55.55 0.61 -18.73 16 20 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 25 C 0.15 2.24 6.80 -82.37 -0.56 1.68 16 26 C -0.11 -1.27 9.64 36.01 0.35 -0.92 16 27 N -0.52 -7.87 9.12 -9.39 -0.09 -7.96 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.18 2.75 5.14 -52.49 -0.27 2.48 16 33 H 0.42 4.76 8.00 -34.47 -0.28 4.49 16 34 H 0.11 2.01 7.37 -52.49 -0.39 1.63 16 35 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.13 3.13 6.15 -52.48 -0.32 2.80 16 37 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 38 H 0.11 2.47 7.60 -52.49 -0.40 2.07 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.96 7.16 -51.93 -0.37 0.59 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -30.17 360.85 -9.32 -39.49 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.53 Total: 11.64 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -3.30 Total: -31.90 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.69 Total: -41.55 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.99 Total: -42.89 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.60 Total: 47.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.17 -9.32 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589586788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.300 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds