Wall clock time and date at job start Wed Apr 1 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35782 * 116.99744 * 2 1 4 4 C 1.38894 * 119.59954 * 179.72706 * 3 2 1 5 5 C 1.38341 * 119.18412 * 179.74844 * 4 3 2 6 6 C 1.39383 * 118.42373 * 0.51878 * 5 4 3 7 7 N 1.39984 * 120.42767 * 179.72271 * 6 5 4 8 8 S 1.65602 * 119.99824 * 35.02465 * 7 6 5 9 9 O 1.42097 * 106.40414 * 178.53870 * 8 7 6 10 10 O 1.42105 * 106.40136 * 311.46096 * 8 7 6 11 11 C 1.76197 * 107.21885 * 64.99604 * 8 7 6 12 12 C 1.38662 * 119.87546 * 269.72854 * 11 8 7 13 13 C 1.38615 * 120.49804 * 179.72402 * 12 11 8 14 14 C 1.37643 * 120.24993 * 0.55107 * 13 12 11 15 15 C 1.40704 * 119.74138 * 359.72338 * 14 13 12 16 16 C 1.41394 * 120.24251 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00446 * 204.38326 * 16 15 14 18 18 C 1.39955 * 119.99817 * 24.38210 * 16 15 14 19 19 N 1.30823 * 119.99849 * 17.87041 * 18 16 15 20 20 Si 1.86797 * 119.99605 * 197.86779 * 18 16 15 21 21 H 1.48500 * 109.47450 * 90.00476 * 20 18 16 22 22 H 1.48505 * 109.46783 * 209.99971 * 20 18 16 23 23 H 1.48500 * 109.47641 * 329.99711 * 20 18 16 24 24 C 1.37603 * 119.87546 * 90.00090 * 11 8 7 25 25 C 1.38673 * 119.14480 * 359.74560 * 6 5 4 26 26 C 1.50705 * 119.63578 * 179.97438 * 25 6 5 27 27 N 1.31973 * 120.73039 * 359.97438 * 25 6 5 28 28 H 1.09002 * 109.46767 * 299.99609 * 1 2 3 29 29 H 1.08999 * 109.47488 * 59.99841 * 1 2 3 30 30 H 1.09003 * 109.47325 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.40295 * 0.02693 * 4 3 2 32 32 H 1.08000 * 120.78513 * 180.26208 * 5 4 3 33 33 H 0.97000 * 120.00093 * 215.02050 * 7 6 5 34 34 H 1.07999 * 119.75019 * 359.97438 * 12 11 8 35 35 H 1.08001 * 119.88029 * 180.25802 * 13 12 11 36 36 H 1.08004 * 120.13081 * 179.75485 * 14 13 12 37 37 H 0.97004 * 119.99534 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.12250 * 359.97438 * 24 11 8 39 39 H 1.08994 * 109.47119 * 269.97921 * 26 25 6 40 40 H 1.08998 * 109.46744 * 29.98423 * 26 25 6 41 41 H 1.08999 * 109.46653 * 149.97495 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4329 1.2729 0.0058 5 6 4.0520 2.5101 0.0004 6 6 3.2526 3.6519 0.0005 7 7 3.8349 4.9249 0.0010 8 16 5.2476 5.1896 -0.8216 9 8 5.5552 6.5672 -0.6580 10 8 6.1338 4.1451 -0.4435 11 6 4.9055 4.9560 -2.5342 12 6 5.0553 3.7006 -3.1035 13 6 4.7842 3.5011 -4.4482 14 6 4.3736 4.5523 -5.2362 15 6 4.2237 5.8318 -4.6704 16 6 3.8020 6.9190 -5.4700 17 1 4.0521 7.9296 -5.1827 18 6 3.0606 6.6856 -6.6338 19 7 2.4610 5.5359 -6.8078 20 14 2.9270 8.0156 -7.9386 21 1 4.0371 7.8660 -8.9135 22 1 1.6271 7.8872 -8.6451 23 1 3.0104 9.3511 -7.2946 24 6 4.4962 6.0214 -3.3029 25 6 1.8731 3.5106 0.0005 26 6 0.9983 4.7378 0.0011 27 7 1.3178 2.3134 -0.0001 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0211 0.3672 0.0098 32 1 5.1291 2.5892 0.0004 33 1 3.4109 5.6520 0.4831 34 1 5.3816 2.8711 -2.4938 35 1 4.9002 2.5181 -4.8804 36 1 4.1668 4.3955 -6.2846 37 1 1.9468 5.3743 -7.6143 38 1 4.3841 6.9992 -2.8582 39 1 0.7872 5.0329 1.0289 40 1 1.5123 5.5505 -0.5121 41 1 0.0629 4.5173 -0.5131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589586788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:27 Heat of formation + Delta-G solvation = -75.404297 kcal Electronic energy + Delta-G solvation = -28417.273358 eV Core-core repulsion = 24388.524822 eV Total energy + Delta-G solvation = -4028.748536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81246 -39.49042 -39.36330 -38.41181 -37.08234 -36.22706 -35.68360 -34.05661 -31.93475 -31.62900 -31.05973 -29.19713 -27.36773 -27.23460 -24.08059 -23.71953 -23.36725 -22.81227 -20.80582 -19.80767 -19.47522 -18.86478 -18.44553 -17.83673 -17.53739 -16.99647 -16.89160 -16.63132 -16.35438 -15.48070 -15.34129 -15.26060 -15.10960 -14.98807 -14.63230 -14.32551 -13.76147 -13.73135 -13.50231 -13.37881 -13.36520 -13.23221 -13.19849 -13.08757 -12.93115 -12.83621 -12.72416 -12.59753 -12.57915 -12.22551 -11.72918 -11.56068 -11.32012 -11.16012 -10.76106 -10.58796 -9.89818 -9.57914 -9.03138 -8.74304 -6.46205 -0.76426 0.07968 0.20495 0.35993 0.82960 1.37324 1.45721 1.50205 1.86901 2.15699 2.16827 2.47522 2.62295 2.66082 3.17786 3.30425 3.50436 3.63210 3.83667 4.06947 4.27962 4.32033 4.40907 4.46530 4.48912 4.56750 4.70753 4.73476 4.79626 4.82196 4.87853 4.90988 5.00439 5.06953 5.15537 5.18945 5.38458 5.41785 5.52799 5.86531 5.89447 5.92418 6.07939 6.23156 6.51102 6.78458 6.78838 6.82863 8.23454 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.003848 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.397810 B = 7273.882281 C = 8449.421178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.316 6.316 3 C 0.294 3.706 4 C -0.167 4.167 5 C -0.094 4.094 6 C 0.067 3.933 7 N -1.032 6.032 8 S 2.716 3.284 9 O -0.978 6.978 10 O -0.968 6.968 11 C -0.638 4.638 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.139 4.139 15 C 0.063 3.937 16 C -0.497 4.497 17 H 0.081 0.919 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.142 4.142 25 C 0.147 3.853 26 C -0.110 4.110 27 N -0.531 5.531 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.124 0.876 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.438 0.562 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.291 0.709 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -6.266 11.398 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.114 3.886 4 C -0.188 4.188 5 C -0.122 4.122 6 C -0.031 4.031 7 N -0.785 5.785 8 S 2.810 3.190 9 O -0.968 6.968 10 O -0.958 6.958 11 C -0.727 4.727 12 C -0.163 4.163 13 C -0.144 4.144 14 C -0.158 4.158 15 C 0.060 3.940 16 C -0.526 4.526 17 H 0.099 0.901 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.181 1.181 24 C -0.163 4.163 25 C 0.006 3.994 26 C -0.167 4.167 27 N -0.256 5.256 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.186 0.814 32 H 0.198 0.802 33 H 0.278 0.722 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.388 -6.571 11.559 14.002 hybrid contribution -0.169 0.785 -1.318 1.544 sum -4.558 -5.786 10.241 12.614 Atomic orbital electron populations 1.23043 0.76040 1.04611 1.02106 1.86240 1.24190 1.23834 1.88039 1.20046 0.89969 0.84832 0.93766 1.21161 0.91679 0.99619 1.06340 1.22457 1.03222 0.90567 0.95981 1.18060 0.93147 0.84709 1.07225 1.52964 1.45228 1.15637 1.64630 1.01165 0.72354 0.72293 0.73188 1.93535 1.82489 1.34183 1.86613 1.93419 1.62290 1.57635 1.82412 1.30084 1.17989 1.01086 1.23544 1.20444 1.05211 0.94636 0.96032 1.21124 1.00225 0.98535 0.94505 1.21653 1.00896 0.93656 0.99642 1.18018 0.90427 0.93869 0.91662 1.19876 1.31106 0.94577 1.07000 0.90094 1.26729 0.92057 0.98835 1.00046 1.69822 1.22477 1.25535 1.26919 0.85196 0.78712 0.78500 0.77350 1.18712 1.19129 1.18117 1.20868 1.04612 0.96723 0.94079 1.21142 0.90507 0.93030 0.94691 1.20847 0.99008 0.92084 1.04743 1.67104 1.40611 0.98203 1.19696 0.92191 0.93193 0.85825 0.81371 0.80214 0.72198 0.85146 0.85916 0.87022 0.89782 0.86696 0.87462 0.89998 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 113.37 1.18 1.87 16 2 O -0.32 -7.93 10.48 -91.10 -0.95 -8.88 16 3 C 0.29 8.24 7.49 84.80 0.63 8.87 16 4 C -0.17 -4.37 10.03 22.45 0.23 -4.15 16 5 C -0.09 -2.66 9.11 22.57 0.21 -2.45 16 6 C 0.07 1.92 6.34 38.22 0.24 2.16 16 7 N -1.03 -27.91 5.20 -51.03 -0.27 -28.18 16 8 S 2.72 92.90 5.58 -56.49 -0.32 92.58 16 9 O -0.98 -37.49 17.27 -128.00 -2.21 -39.70 16 10 O -0.97 -33.85 13.99 -128.00 -1.79 -35.64 16 11 C -0.64 -26.67 5.90 22.22 0.13 -26.54 16 12 C -0.14 -5.91 9.53 22.46 0.21 -5.70 16 13 C -0.12 -5.53 10.02 22.22 0.22 -5.31 16 14 C -0.14 -6.99 8.70 22.73 0.20 -6.79 16 15 C 0.06 3.31 5.58 -21.29 -0.12 3.19 16 16 C -0.50 -25.77 9.05 23.46 0.21 -25.56 16 17 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 18 C 0.04 1.88 5.14 85.26 0.44 2.32 16 19 N -0.82 -40.97 10.95 21.83 0.24 -40.73 16 20 Si 0.98 36.63 29.59 68.60 2.03 38.66 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 24 C -0.14 -6.71 9.26 22.73 0.21 -6.50 16 25 C 0.15 4.08 6.80 42.64 0.29 4.37 16 26 C -0.11 -2.41 9.64 71.24 0.69 -1.72 16 27 N -0.53 -15.33 9.12 -296.48 -2.70 -18.03 16 28 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.18 5.10 5.14 -2.91 -0.01 5.09 16 33 H 0.44 9.05 8.00 -96.74 -0.77 8.27 16 34 H 0.13 4.70 7.37 -2.91 -0.02 4.68 16 35 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.11 5.81 6.15 -2.91 -0.02 5.80 16 37 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 38 H 0.12 5.20 7.60 -2.91 -0.02 5.18 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 1.80 7.16 -2.39 -0.02 1.78 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -65.08 360.85 -0.68 -65.77 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.32 Total: 36.08 kcal Atomic # 6 Polarization: -66.90 SS G_CDS: 4.97 Total: -61.93 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.73 Total: -86.94 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -4.96 Total: -84.22 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 16 Polarization: 92.90 SS G_CDS: -0.32 Total: 92.58 kcal Total: -65.08 -0.68 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589586788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.637 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds