Wall clock time and date at job start Wed Apr 1 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00078 * 2 1 4 4 H 1.48494 * 109.47376 * 240.00191 * 3 2 1 5 5 H 1.48500 * 109.46767 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46789 * 119.99923 * 3 2 1 7 7 C 1.38815 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99849 * 161.92821 * 7 2 1 9 9 N 1.36929 * 119.99638 * 341.92588 * 7 2 1 10 10 C 1.46930 * 120.63342 * 332.62582 * 9 7 2 11 11 C 1.53189 * 108.77710 * 233.58842 * 10 9 7 12 12 C 1.53036 * 109.31397 * 305.36738 * 11 10 9 13 13 N 1.46504 * 109.46072 * 181.38821 * 12 11 10 14 14 C 1.34780 * 120.00142 * 155.27703 * 13 12 11 15 15 O 1.21636 * 119.99898 * 359.71627 * 14 13 12 16 16 C 1.47188 * 119.99908 * 179.72130 * 14 13 12 17 17 C 1.44421 * 123.45986 * 354.46010 * 16 14 13 18 18 C 1.32779 * 113.08004 * 179.80632 * 17 16 14 19 19 S 1.75500 * 110.57456 * 0.44718 * 18 17 16 20 20 C 1.36010 * 123.45967 * 174.75852 * 16 14 13 21 21 C 1.50699 * 124.58946 * 359.97431 * 20 16 14 22 22 F 1.39897 * 109.47216 * 50.62281 * 21 20 16 23 23 F 1.39902 * 109.47033 * 170.62208 * 21 20 16 24 24 F 1.39904 * 109.47448 * 290.61859 * 21 20 16 25 25 C 1.53040 * 109.54273 * 61.36218 * 12 11 10 26 26 C 1.46927 * 120.63147 * 152.60636 * 9 7 2 27 27 H 0.97007 * 120.00034 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58585 * 113.79904 * 10 9 7 29 29 H 1.08997 * 109.70107 * 353.44407 * 10 9 7 30 30 H 1.09004 * 109.50162 * 185.41047 * 11 10 9 31 31 H 1.09005 * 109.52257 * 65.33194 * 11 10 9 32 32 H 1.09004 * 109.46134 * 301.35391 * 12 11 10 33 33 H 0.96998 * 120.00233 * 334.99030 * 13 12 11 34 34 H 1.07998 * 123.46219 * 0.02562 * 17 16 14 35 35 H 1.08000 * 124.70794 * 180.21197 * 18 17 16 36 36 H 1.09003 * 109.49585 * 58.58873 * 25 12 11 37 37 H 1.08998 * 109.50080 * 178.68498 * 25 12 11 38 38 H 1.08997 * 109.58714 * 246.19594 * 26 9 7 39 39 H 1.09001 * 109.58356 * 6.48415 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0503 -1.2250 -0.2907 9 7 1.3762 -2.3589 0.3669 10 6 0.2375 -2.3262 1.2948 11 6 0.5190 -3.2864 2.4548 12 6 0.8352 -4.6758 1.8964 13 7 1.0724 -5.6046 3.0043 14 6 0.8780 -6.9267 2.8287 15 8 0.5006 -7.3482 1.7519 16 6 1.1223 -7.8604 3.9399 17 6 1.6796 -7.4582 5.2101 18 6 1.8081 -8.4662 6.0647 19 16 1.2582 -9.9656 5.3372 20 6 0.8517 -9.1917 3.8740 21 6 0.2712 -9.8882 2.6702 22 9 1.0120 -9.5491 1.5330 23 9 0.3211 -11.2729 2.8635 24 9 -1.0585 -9.4892 2.4968 25 6 2.0852 -4.6016 1.0166 26 6 1.8214 -3.6563 -0.1597 27 1 -0.4850 0.8401 0.0004 28 1 -0.6675 -2.6382 0.7736 29 1 0.1069 -1.3153 1.6808 30 1 -0.3576 -3.3444 3.1000 31 1 1.3706 -2.9230 3.0300 32 1 -0.0072 -5.0283 1.3012 33 1 1.3734 -5.2686 3.8630 34 1 1.9596 -6.4413 5.4423 35 1 2.2004 -8.3765 7.0670 36 1 2.9223 -4.2256 1.6049 37 1 2.3233 -5.5957 0.6382 38 1 1.0455 -4.0768 -0.7993 39 1 2.7370 -3.5221 -0.7357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599373585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:34 Heat of formation + Delta-G solvation = -128.114581 kcal Electronic energy + Delta-G solvation = -28756.328237 eV Core-core repulsion = 24183.437272 eV Total energy + Delta-G solvation = -4572.890966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.16151 -47.76418 -47.50333 -40.15504 -37.90568 -36.92009 -34.53655 -32.18932 -31.35330 -30.22462 -29.53453 -26.96166 -25.05220 -23.84826 -22.44591 -22.11995 -21.42765 -19.93803 -19.62911 -19.18912 -18.48247 -18.08893 -17.08418 -16.54759 -16.21635 -15.66894 -15.11674 -14.93773 -14.66804 -14.60407 -14.40863 -14.06080 -13.90071 -13.77354 -13.72107 -13.58067 -13.54579 -13.32807 -13.02138 -12.96185 -12.58008 -12.43729 -12.34580 -11.55986 -11.48304 -11.15064 -10.90112 -10.72471 -10.53245 -10.31480 -10.07184 -10.01074 -9.77935 -9.75511 -9.54901 -9.04947 -8.74787 -8.46731 -6.71288 -5.81015 -3.22121 -0.02625 0.74514 1.23254 1.49890 2.46094 3.15852 3.20572 3.37692 3.43389 3.44378 3.54400 4.12320 4.26118 4.29724 4.48532 4.67902 4.73908 5.18199 5.31259 5.35537 5.40644 5.47578 5.55730 5.57631 5.84063 6.04577 6.21599 6.28657 6.49071 6.53963 6.55141 6.77793 6.84529 6.97857 7.28823 7.51546 7.62582 7.78236 8.20711 8.42580 9.19093 9.82602 10.39397 11.27991 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.002538 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.221703 B =11029.838587 C =11620.598375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.710 5.710 14 C 0.560 3.440 15 O -0.517 6.517 16 C -0.084 4.084 17 C -0.115 4.115 18 C -0.210 4.210 19 S 0.259 5.741 20 C -0.286 4.286 21 C 0.546 3.454 22 F -0.147 7.147 23 F -0.182 7.182 24 F -0.163 7.163 25 C -0.139 4.139 26 C 0.148 3.852 27 H 0.255 0.745 28 H 0.021 0.979 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -20.252 15.801 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.359 5.359 14 C 0.343 3.657 15 O -0.394 6.394 16 C -0.105 4.105 17 C -0.144 4.144 18 C -0.346 4.346 19 S 0.527 5.473 20 C -0.407 4.407 21 C 0.490 3.510 22 F -0.128 7.128 23 F -0.163 7.163 24 F -0.145 7.145 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.178 0.822 35 H 0.198 0.802 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.171 -21.902 15.479 26.908 hybrid contribution 0.604 2.456 -0.166 2.535 sum 2.775 -19.446 15.313 24.907 Atomic orbital electron populations 1.70028 1.05254 1.25677 1.53737 1.25030 0.95262 0.98427 1.00921 0.86368 0.78923 0.83348 0.78130 1.20875 1.21643 1.21071 1.19154 0.93002 0.84942 1.41223 0.91633 1.44096 1.36314 1.01386 1.49735 1.20736 0.88985 0.98120 0.87374 1.22544 1.00594 0.94477 1.01007 1.21133 0.98788 0.88434 0.86831 1.46190 1.67760 1.05832 1.16162 1.17547 0.78787 0.82581 0.86779 1.90904 1.45425 1.77221 1.25878 1.20483 1.01571 0.92150 0.96259 1.21286 1.00967 1.01218 0.90881 1.25809 1.07529 0.96267 1.04979 1.83155 1.56393 1.08255 0.99493 1.24777 1.13802 0.99665 1.02483 1.16980 0.76617 0.75287 0.82148 1.93316 1.76211 1.91668 1.51636 1.93188 1.96359 1.31582 1.95180 1.93246 1.35086 1.90395 1.95736 1.22382 0.97007 0.99731 0.98815 1.20870 0.97958 0.86477 0.92630 0.93532 0.96055 0.88974 0.92651 0.92121 0.89690 0.77018 0.82157 0.80157 0.92283 0.92568 0.96104 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.21 55.49 0.62 -25.25 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.68 3.00 -172.32 -0.52 -15.19 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 C -0.15 -2.60 5.55 -26.61 -0.15 -2.75 16 12 C 0.15 2.58 2.41 -67.89 -0.16 2.42 16 13 N -0.71 -9.73 5.06 -54.91 -0.28 -10.00 16 14 C 0.56 8.35 7.71 -12.62 -0.10 8.26 16 15 O -0.52 -9.61 12.46 5.25 0.07 -9.55 16 16 C -0.08 -0.98 5.96 -104.63 -0.62 -1.60 16 17 C -0.11 -0.89 9.90 -39.02 -0.39 -1.27 16 18 C -0.21 -1.23 11.12 28.86 0.32 -0.91 16 19 S 0.26 1.89 22.37 -107.50 -2.41 -0.51 16 20 C -0.29 -3.29 5.79 -35.11 -0.20 -3.49 16 21 C 0.55 7.37 2.81 36.01 0.10 7.47 16 22 F -0.15 -2.34 14.59 2.25 0.03 -2.31 16 23 F -0.18 -2.14 16.75 2.25 0.04 -2.10 16 24 F -0.16 -2.44 16.70 2.25 0.04 -2.41 16 25 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 26 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 33 H 0.40 4.15 7.18 -40.82 -0.29 3.86 16 34 H 0.16 0.86 7.13 -52.49 -0.37 0.49 16 35 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -32.08 345.22 -8.15 -40.23 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.29 Total: -0.01 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.62 Total: 5.56 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.17 Total: -50.45 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.41 Total: -0.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.08 -8.15 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599373585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.884 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds