Wall clock time and date at job start Wed Apr 1 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47032 * 2 1 4 4 C 1.35102 * 119.46101 * 99.54734 * 3 2 1 5 5 C 1.41410 * 121.13573 * 0.04277 * 4 3 2 6 6 O 1.21686 * 120.00300 * 255.25633 * 5 4 3 7 7 O 1.34953 * 120.00068 * 75.26032 * 5 4 3 8 8 C 1.51538 * 117.72609 * 180.02562 * 4 3 2 9 9 H 1.09005 * 107.92555 * 121.85829 * 8 4 3 10 10 C 1.50697 * 107.95507 * 238.11480 * 8 4 3 11 11 C 1.38327 * 119.96468 * 87.27189 * 10 8 4 12 12 C 1.38274 * 120.13822 * 179.97438 * 11 10 8 13 13 C 1.38129 * 120.07106 * 359.97173 * 12 11 10 14 14 C 1.38854 * 119.92663 * 0.02904 * 13 12 11 15 15 O 1.35758 * 120.06453 * 179.97438 * 14 13 12 16 16 C 1.34822 * 116.99995 * 5.63942 * 15 14 13 17 17 H 1.07999 * 120.00625 * 354.63065 * 16 15 14 18 18 C 1.38659 * 119.99741 * 174.90414 * 16 15 14 19 19 N 1.31560 * 120.00101 * 179.72840 * 18 16 15 20 20 Si 1.86797 * 119.99989 * 359.72344 * 18 16 15 21 21 H 1.48496 * 109.47318 * 90.00325 * 20 18 16 22 22 H 1.48509 * 109.47217 * 210.00143 * 20 18 16 23 23 H 1.48501 * 109.47321 * 330.00149 * 20 18 16 24 24 C 1.38082 * 119.96591 * 267.52255 * 10 8 4 25 25 N 1.47254 * 116.93231 * 359.97438 * 8 4 3 26 26 C 1.34773 * 118.41201 * 359.97438 * 25 8 4 27 27 S 1.71206 * 118.92223 * 179.97438 * 26 25 8 28 28 N 1.33898 * 122.16018 * 0.02562 * 26 25 8 29 29 H 1.09002 * 109.47531 * 59.99892 * 1 2 3 30 30 H 1.09005 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47041 * 299.99712 * 1 2 3 32 32 H 1.09000 * 109.47041 * 240.00288 * 2 1 3 33 33 H 1.09002 * 109.47531 * 120.00108 * 2 1 3 34 34 H 0.96702 * 113.99860 * 179.97438 * 7 5 4 35 35 H 1.07997 * 119.93084 * 0.02562 * 11 10 8 36 36 H 1.08004 * 119.96783 * 180.02562 * 12 11 10 37 37 H 1.07998 * 120.03595 * 179.97438 * 13 12 11 38 38 H 0.96990 * 120.00155 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.03757 * 359.97438 * 24 10 8 40 40 H 0.97001 * 120.79938 * 180.02562 * 25 8 4 41 41 H 0.96991 * 118.15591 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.4377 1.9822 1.1600 5 6 2.3998 1.2593 2.3748 6 8 1.5341 1.4956 3.1967 7 8 3.3236 0.3073 2.6225 8 6 2.9348 3.4130 1.1149 9 1 2.3170 4.0044 1.7908 10 6 4.3452 3.4317 1.6453 11 6 5.4081 3.2035 0.7899 12 6 6.7038 3.2204 1.2726 13 6 6.9405 3.4659 2.6111 14 6 5.8757 3.6953 3.4723 15 8 6.1052 3.9363 4.7884 16 6 7.3917 4.0553 5.1737 17 1 8.1866 3.8733 4.4656 18 6 7.6944 4.4061 6.4806 19 7 8.9498 4.5170 6.8580 20 14 6.3196 4.7211 7.7054 21 1 5.9664 3.4519 8.3905 22 1 6.7706 5.7171 8.7104 23 1 5.1289 5.2449 6.9891 24 6 4.5750 3.6715 2.9856 25 7 2.9355 4.0778 -0.1991 26 6 2.5003 3.3835 -1.2692 27 16 2.4948 4.1439 -2.8031 28 7 2.0712 2.1189 -1.1718 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2166 -0.1316 3.4776 35 1 5.2257 3.0127 -0.2573 36 1 7.5316 3.0423 0.6022 37 1 7.9527 3.4785 2.9876 38 1 9.1615 4.7620 7.7722 39 1 3.7445 3.8460 3.6536 40 1 3.2424 4.9932 -0.2925 41 1 1.7703 1.6743 -1.9796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736932978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:03 Heat of formation + Delta-G solvation = -51.759426 kcal Electronic energy + Delta-G solvation = -28450.517346 eV Core-core repulsion = 24422.794129 eV Total energy + Delta-G solvation = -4027.723217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90030 -40.07761 -39.36747 -37.35743 -36.22240 -36.05459 -34.47567 -32.52737 -32.33184 -30.47770 -29.35939 -26.59370 -26.42328 -25.29044 -23.41618 -22.97339 -22.08951 -20.96712 -20.09491 -18.79721 -18.59266 -17.95479 -17.90026 -17.38385 -16.62479 -16.40483 -15.78176 -15.50700 -15.33778 -15.13580 -14.61506 -14.44013 -14.35490 -14.02699 -13.73050 -13.64886 -13.49776 -12.95771 -12.94181 -12.44988 -12.36915 -12.09019 -11.86678 -11.69047 -11.56353 -11.44562 -11.36506 -11.11327 -11.04098 -10.93666 -10.86601 -10.29445 -9.57656 -9.01376 -8.80176 -8.51657 -8.14733 -8.05799 -7.60322 -6.54186 -4.22235 0.25415 1.30921 1.44663 1.63413 1.77806 2.02360 2.34289 2.63485 3.13676 3.15434 3.17193 3.31101 3.60639 4.12503 4.21157 4.24773 4.38692 4.55317 4.56050 4.69606 4.85989 4.89331 5.00379 5.01615 5.13103 5.26648 5.32265 5.43793 5.57279 5.57871 5.61922 5.87000 5.98597 6.01964 6.15787 6.23165 6.40414 6.50718 6.69089 6.82689 6.94724 7.08017 7.35542 7.57627 7.63169 7.88169 8.80027 9.39190 10.52936 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.003352 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.478969 B = 8351.011340 C = 9521.842420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C 0.174 3.826 4 C -0.216 4.216 5 C 0.562 3.438 6 O -0.497 6.497 7 O -0.493 6.493 8 C 0.225 3.775 9 H 0.104 0.896 10 C -0.084 4.084 11 C -0.180 4.180 12 C -0.070 4.070 13 C -0.208 4.208 14 C 0.163 3.837 15 O -0.213 6.213 16 C -0.393 4.393 17 H 0.107 0.893 18 C 0.066 3.934 19 N -0.874 5.874 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.175 4.175 25 N -0.634 5.634 26 C 0.565 3.435 27 S -0.619 6.619 28 N -0.598 5.598 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.281 0.719 39 H 0.118 0.882 40 H 0.450 0.550 41 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -10.168 -11.686 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C 0.069 3.931 4 C -0.226 4.226 5 C 0.403 3.597 6 O -0.385 6.385 7 O -0.303 6.303 8 C 0.117 3.883 9 H 0.122 0.878 10 C -0.086 4.086 11 C -0.199 4.199 12 C -0.088 4.088 13 C -0.227 4.227 14 C 0.110 3.890 15 O -0.117 6.117 16 C -0.468 4.468 17 H 0.125 0.875 18 C -0.138 4.138 19 N -0.512 5.512 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.195 4.195 25 N -0.266 5.266 26 C 0.207 3.793 27 S -0.485 6.485 28 N -0.221 5.221 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.269 0.731 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.296 0.704 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -14.779 -9.322 -12.200 21.311 hybrid contribution -0.108 -0.299 1.621 1.652 sum -14.888 -9.620 -10.580 20.643 Atomic orbital electron populations 1.21820 0.92721 1.03380 1.03219 1.20986 0.97747 0.89158 1.05874 1.20082 0.94284 0.93822 0.84955 1.18930 1.14644 0.96749 0.92284 1.18236 0.78480 0.77528 0.85478 1.91009 1.35718 1.64905 1.46862 1.85196 1.52227 1.49284 1.43552 1.18769 0.95598 0.90207 0.83712 0.87792 1.19325 0.92662 1.02970 0.93633 1.20298 0.92370 1.08970 0.98265 1.20775 0.95989 0.97199 0.94859 1.21382 1.00186 1.07459 0.93658 1.18935 0.92751 0.93155 0.84152 1.83574 1.30271 1.78527 1.19343 1.20762 0.79575 1.48607 0.97867 0.87522 1.24473 0.97008 0.95385 0.96939 1.69636 1.16859 1.45189 1.19469 0.86195 0.81933 0.78742 0.80152 1.19768 1.20640 1.18314 1.19878 0.95055 1.10389 0.94159 1.45598 1.59559 1.16762 1.04691 1.22142 0.80140 0.83722 0.93298 1.93823 1.75521 1.70794 1.08349 1.41880 1.59074 1.10359 1.10804 0.91925 0.90787 0.91539 0.88587 0.88226 0.73096 0.87946 0.86814 0.84632 0.90854 0.86401 0.70428 0.71814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.15 0.37 -0.40 16 2 C -0.10 -0.57 5.85 -27.89 -0.16 -0.73 16 3 C 0.17 1.47 6.09 -81.65 -0.50 0.97 16 4 C -0.22 -2.38 5.12 -104.12 -0.53 -2.91 16 5 C 0.56 6.66 5.41 31.94 0.17 6.83 16 6 O -0.50 -7.04 17.82 -19.41 -0.35 -7.39 16 7 O -0.49 -5.09 12.84 -41.19 -0.53 -5.61 16 8 C 0.22 2.68 3.36 -69.41 -0.23 2.44 16 9 H 0.10 1.21 7.96 -51.93 -0.41 0.80 16 10 C -0.08 -1.25 4.50 -104.65 -0.47 -1.72 16 11 C -0.18 -2.74 9.29 -39.54 -0.37 -3.10 16 12 C -0.07 -1.17 10.04 -39.61 -0.40 -1.57 16 13 C -0.21 -4.13 9.17 -39.39 -0.36 -4.49 16 14 C 0.16 3.46 6.65 -39.11 -0.26 3.20 16 15 O -0.21 -5.28 8.59 0.05 0.00 -5.28 16 16 C -0.39 -10.53 9.95 30.89 0.31 -10.22 16 17 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 18 C 0.07 1.78 5.49 -17.51 -0.10 1.69 16 19 N -0.87 -24.37 13.96 55.48 0.77 -23.60 16 20 Si 0.90 20.86 28.62 -169.99 -4.86 15.99 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.17 -3.13 9.35 -39.39 -0.37 -3.50 16 25 N -0.63 -6.85 4.48 -57.11 -0.26 -7.11 16 26 C 0.57 6.23 7.85 -87.70 -0.69 5.54 16 27 S -0.62 -8.93 30.73 -107.50 -3.30 -12.23 16 28 N -0.60 -5.02 5.13 -10.04 -0.05 -5.07 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.61 6.16 -51.93 -0.32 0.29 16 34 H 0.41 2.69 8.98 45.56 0.41 3.10 16 35 H 0.10 1.45 7.65 -52.49 -0.40 1.05 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.14 2.86 5.64 -52.49 -0.30 2.56 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 2.05 8.03 -52.49 -0.42 1.63 16 40 H 0.45 4.59 8.80 -40.82 -0.36 4.23 16 41 H 0.44 2.79 8.46 -40.82 -0.35 2.44 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -33.13 367.53 -10.31 -43.44 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.68 Total: 9.28 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.59 Total: -7.97 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.47 Total: -35.77 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.87 Total: -18.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.86 Total: 15.99 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -3.30 Total: -12.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.13 -10.31 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736932978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.320 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds