Wall clock time and date at job start Wed Apr 1 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47257 * 2 1 4 4 C 1.46500 * 119.99933 * 269.99984 * 3 2 1 5 5 C 1.50699 * 109.47162 * 270.00192 * 4 3 2 6 6 H 1.08003 * 120.00058 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00103 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99961 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99946 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46980 * 90.00133 * 9 7 5 11 11 H 1.48493 * 109.47305 * 210.00230 * 9 7 5 12 12 H 1.48500 * 109.47236 * 330.00504 * 9 7 5 13 13 C 1.34776 * 120.00258 * 90.00214 * 3 2 1 14 14 O 1.21276 * 120.00168 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99654 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46887 * 180.02562 * 15 13 3 17 17 C 1.34757 * 116.99920 * 180.02562 * 16 15 13 18 18 O 1.21513 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.47423 * 119.99774 * 179.97438 * 17 16 15 20 20 C 1.40173 * 120.59968 * 0.02562 * 19 17 16 21 21 N 1.30594 * 121.16777 * 179.97438 * 20 19 17 22 22 C 1.34914 * 122.45335 * 0.02562 * 21 20 19 23 23 C 1.40604 * 128.44911 * 180.02562 * 22 21 20 24 24 C 1.32299 * 115.91202 * 179.97438 * 23 22 21 25 25 S 1.75508 * 110.83521 * 359.97438 * 24 23 22 26 26 C 1.40111 * 119.28238 * 359.97438 * 22 21 20 27 27 C 1.39333 * 119.76058 * 0.02562 * 26 22 21 28 28 H 1.09006 * 109.47436 * 60.00090 * 1 2 3 29 29 H 1.08994 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46930 * 300.00230 * 1 2 3 31 31 H 1.09000 * 109.46930 * 239.99770 * 2 1 3 32 32 H 1.08997 * 109.46956 * 120.00250 * 2 1 3 33 33 H 1.09001 * 109.47278 * 30.00061 * 4 3 2 34 34 H 1.08996 * 109.47242 * 149.99680 * 4 3 2 35 35 H 0.96998 * 119.99551 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47125 * 60.00387 * 15 13 3 37 37 H 1.08989 * 109.47320 * 300.00096 * 15 13 3 38 38 H 1.08008 * 119.41247 * 0.25254 * 20 19 17 39 39 H 1.07996 * 122.04540 * 359.97438 * 23 22 21 40 40 H 1.08003 * 124.58394 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.74075 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2300 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2574 9 14 3.0131 3.4359 -3.9288 10 1 3.1159 4.8560 -3.5069 11 1 3.4067 3.3136 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1597 1.1671 15 6 1.9914 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1338 1.7104 4.8212 18 8 1.7330 0.5744 4.9804 19 6 2.4333 2.5571 5.9902 20 6 2.8968 3.8692 5.8211 21 7 3.1650 4.6290 6.8488 22 6 3.0157 4.2054 8.1209 23 6 3.2641 4.9101 9.3120 24 6 3.0307 4.2494 10.4341 25 16 2.4573 2.6257 10.0948 26 6 2.5560 2.9037 8.3603 27 6 2.2603 2.0662 7.2866 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6876 -2.0284 34 1 2.0955 3.1409 -1.1385 35 1 5.7176 2.5742 -4.0830 36 1 2.6212 0.4186 2.5302 37 1 0.9434 1.0125 2.5299 38 1 3.0301 4.2601 4.8231 39 1 3.6233 5.9286 9.3109 40 1 3.1730 4.6546 11.4251 41 1 1.9053 1.0599 7.4529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745398454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:46 Heat of formation + Delta-G solvation = -49.178471 kcal Electronic energy + Delta-G solvation = -26808.819823 eV Core-core repulsion = 22781.208524 eV Total energy + Delta-G solvation = -4027.611299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18390 -40.21825 -39.06218 -36.61540 -36.12441 -35.45687 -33.01013 -32.78189 -30.83012 -30.44376 -29.24101 -27.12688 -25.53912 -24.27189 -23.08427 -22.66921 -22.04883 -21.05125 -19.14031 -18.70291 -17.58388 -17.37171 -17.02760 -16.67210 -16.57915 -16.43853 -16.07657 -15.39190 -15.08080 -14.61935 -14.58887 -14.14795 -13.86506 -13.60258 -13.55421 -13.26637 -13.10700 -12.94087 -12.68741 -12.44522 -12.26843 -12.13845 -11.87706 -11.60383 -11.49862 -11.06777 -11.00586 -10.96361 -10.93817 -10.66047 -10.53938 -10.19526 -9.86436 -9.58342 -9.26821 -9.16522 -8.61502 -8.50979 -7.85966 -6.11206 -4.10711 -0.37428 0.60673 0.84444 1.32648 1.35888 2.21668 2.34367 3.11617 3.27704 3.33419 3.34999 3.35657 3.59615 3.71156 4.11028 4.32606 4.37184 4.42770 4.55816 4.67112 4.72311 4.91657 5.07598 5.10299 5.19916 5.21905 5.26628 5.35698 5.46314 5.51187 5.60794 5.62539 5.89693 6.01292 6.07393 6.12581 6.32437 6.62594 6.87228 7.20413 7.35209 7.48349 7.56369 8.06852 8.41983 8.77115 8.92118 9.48181 11.02000 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002096 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.884354 B =13352.427690 C =14303.828419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.516 6.516 15 C 0.052 3.948 16 O -0.321 6.321 17 C 0.519 3.481 18 O -0.504 6.504 19 C -0.166 4.166 20 C 0.186 3.814 21 N -0.462 5.462 22 C 0.156 3.844 23 C -0.121 4.121 24 C -0.161 4.161 25 S 0.127 5.873 26 C -0.221 4.221 27 C 0.038 3.962 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.187 0.813 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -1.422 26.235 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.392 6.392 15 C -0.025 4.025 16 O -0.236 6.236 17 C 0.362 3.638 18 O -0.394 6.394 19 C -0.173 4.173 20 C 0.014 3.986 21 N -0.170 5.170 22 C 0.022 3.978 23 C -0.151 4.151 24 C -0.298 4.298 25 S 0.390 5.610 26 C -0.338 4.338 27 C 0.009 3.991 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.204 0.796 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.412 -1.415 26.991 28.620 hybrid contribution -0.335 0.564 -1.457 1.598 sum -9.747 -0.851 25.534 27.345 Atomic orbital electron populations 1.22248 0.96464 1.01909 1.02344 1.21550 0.93663 0.83545 1.03551 1.47867 1.64162 1.13556 1.06444 1.19709 0.97553 0.93452 0.79467 1.21305 0.95244 1.33143 1.07284 0.90676 1.24858 0.95019 0.95771 0.97336 1.69894 1.15117 1.44794 1.23567 0.86850 0.81393 0.81651 0.79788 1.19831 1.21051 1.19061 1.19670 0.79525 0.87136 0.84247 1.90723 1.44205 1.17523 1.86701 1.23001 1.03021 0.92613 0.83878 1.86585 1.78510 1.44649 1.13826 1.20635 0.74584 0.85276 0.83294 1.90855 1.42685 1.19004 1.86826 1.19983 1.09158 0.96823 0.91329 1.23328 0.88392 0.88175 0.98658 1.67757 1.15838 1.36115 0.97327 1.19410 0.95708 0.89959 0.92752 1.19703 1.03997 1.02418 0.89010 1.25496 1.03886 0.97483 1.02929 1.84359 1.68647 1.12673 0.95333 1.23487 1.11198 0.99727 0.99349 1.20955 0.90323 0.99062 0.88733 0.91947 0.91665 0.93023 0.89129 0.91353 0.94865 0.94364 0.92500 0.88147 0.88373 0.79641 0.82478 0.80258 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.48 5.93 -4.04 -0.02 1.45 16 3 N -0.59 -11.56 2.46 -175.07 -0.43 -11.99 16 4 C 0.22 5.16 4.23 -5.19 -0.02 5.14 16 5 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 6 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 9 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.51 10.13 7.75 -10.99 -0.09 10.05 16 14 O -0.52 -12.50 16.08 -14.10 -0.23 -12.72 16 15 C 0.05 0.79 4.51 36.01 0.16 0.95 16 16 O -0.32 -4.97 9.03 -47.33 -0.43 -5.40 16 17 C 0.52 7.10 7.90 34.47 0.27 7.37 16 18 O -0.50 -7.40 16.20 -19.28 -0.31 -7.71 16 19 C -0.17 -1.99 5.89 -104.89 -0.62 -2.61 16 20 C 0.19 2.27 10.77 -17.35 -0.19 2.08 16 21 N -0.46 -5.75 10.39 -10.99 -0.11 -5.86 16 22 C 0.16 1.67 6.96 -84.92 -0.59 1.08 16 23 C -0.12 -0.94 10.16 -40.62 -0.41 -1.35 16 24 C -0.16 -0.91 11.08 28.81 0.32 -0.59 16 25 S 0.13 0.86 23.29 -107.50 -2.50 -1.64 16 26 C -0.22 -2.16 6.49 -38.47 -0.25 -2.41 16 27 C 0.04 0.40 9.73 -38.63 -0.38 0.02 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 32 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.10 1.37 7.40 -51.93 -0.38 0.99 16 37 H 0.10 1.24 7.18 -51.94 -0.37 0.87 16 38 H 0.19 2.19 7.61 -52.48 -0.40 1.79 16 39 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.18 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.16 1.37 7.72 -52.48 -0.41 0.96 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -35.41 371.05 -8.89 -44.29 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.70 Total: -0.79 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.87 Total: 6.23 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.23 Total: -44.41 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.97 Total: -25.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.50 Total: -1.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.41 -8.89 -44.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745398454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.888 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds