Wall clock time and date at job start Wed Apr 1 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47257 * 2 1 4 4 C 1.46500 * 119.99933 * 269.99984 * 3 2 1 5 5 C 1.50699 * 109.47162 * 270.00192 * 4 3 2 6 6 H 1.08003 * 120.00058 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00103 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99961 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99946 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46980 * 90.00133 * 9 7 5 11 11 H 1.48493 * 109.47305 * 210.00230 * 9 7 5 12 12 H 1.48500 * 109.47236 * 330.00504 * 9 7 5 13 13 C 1.34776 * 120.00258 * 90.00214 * 3 2 1 14 14 O 1.21276 * 120.00168 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99654 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46887 * 180.02562 * 15 13 3 17 17 C 1.34757 * 116.99920 * 180.02562 * 16 15 13 18 18 O 1.21513 * 119.99879 * 0.02562 * 17 16 15 19 19 C 1.47423 * 119.99774 * 179.97438 * 17 16 15 20 20 C 1.40173 * 120.59968 * 0.02562 * 19 17 16 21 21 N 1.30594 * 121.16777 * 179.97438 * 20 19 17 22 22 C 1.34914 * 122.45335 * 0.02562 * 21 20 19 23 23 C 1.40604 * 128.44911 * 180.02562 * 22 21 20 24 24 C 1.32299 * 115.91202 * 179.97438 * 23 22 21 25 25 S 1.75508 * 110.83521 * 359.97438 * 24 23 22 26 26 C 1.40111 * 119.28238 * 359.97438 * 22 21 20 27 27 C 1.39333 * 119.76058 * 0.02562 * 26 22 21 28 28 H 1.09006 * 109.47436 * 60.00090 * 1 2 3 29 29 H 1.08994 * 109.47444 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46930 * 300.00230 * 1 2 3 31 31 H 1.09000 * 109.46930 * 239.99770 * 2 1 3 32 32 H 1.08997 * 109.46956 * 120.00250 * 2 1 3 33 33 H 1.09001 * 109.47278 * 30.00061 * 4 3 2 34 34 H 1.08996 * 109.47242 * 149.99680 * 4 3 2 35 35 H 0.96998 * 119.99551 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47125 * 60.00387 * 15 13 3 37 37 H 1.08989 * 109.47320 * 300.00096 * 15 13 3 38 38 H 1.08008 * 119.41247 * 0.25254 * 20 19 17 39 39 H 1.07996 * 122.04540 * 359.97438 * 23 22 21 40 40 H 1.08003 * 124.58394 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.74075 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2300 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2574 9 14 3.0131 3.4359 -3.9288 10 1 3.1159 4.8560 -3.5069 11 1 3.4067 3.3136 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1597 1.1671 15 6 1.9914 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1338 1.7104 4.8212 18 8 1.7330 0.5744 4.9804 19 6 2.4333 2.5571 5.9902 20 6 2.8968 3.8692 5.8211 21 7 3.1650 4.6290 6.8488 22 6 3.0157 4.2054 8.1209 23 6 3.2641 4.9101 9.3120 24 6 3.0307 4.2494 10.4341 25 16 2.4573 2.6257 10.0948 26 6 2.5560 2.9037 8.3603 27 6 2.2603 2.0662 7.2866 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6876 -2.0284 34 1 2.0955 3.1409 -1.1385 35 1 5.7176 2.5742 -4.0830 36 1 2.6212 0.4186 2.5302 37 1 0.9434 1.0125 2.5299 38 1 3.0301 4.2601 4.8231 39 1 3.6233 5.9286 9.3109 40 1 3.1730 4.6546 11.4251 41 1 1.9053 1.0599 7.4529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745398454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:46 Heat of formation + Delta-G solvation = -71.435259 kcal Electronic energy + Delta-G solvation = -26809.784950 eV Core-core repulsion = 22781.208524 eV Total energy + Delta-G solvation = -4028.576425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14121 -41.26574 -40.49733 -37.76743 -37.01995 -36.83211 -34.87632 -33.84071 -32.11398 -31.54748 -30.55322 -28.74511 -26.40358 -25.11792 -24.48461 -24.09823 -23.10017 -21.89370 -20.32208 -19.92112 -19.12695 -18.56129 -18.30440 -17.89498 -17.63265 -17.50869 -17.10419 -16.86163 -16.38590 -15.92831 -15.60372 -15.19252 -15.03353 -14.76681 -14.55136 -14.49654 -14.21066 -14.11011 -13.94187 -13.75185 -13.63521 -13.39941 -13.17151 -12.87041 -12.56671 -12.42456 -12.21291 -12.16298 -12.01842 -11.99616 -11.80994 -11.74443 -11.73803 -10.83083 -10.79453 -10.70258 -9.99126 -9.52418 -9.09707 -8.33456 -6.38900 -1.14541 -0.20226 0.21793 0.63371 0.75663 1.09182 1.34176 1.38381 1.43759 1.46208 1.58164 2.28081 2.31728 2.50806 2.91164 3.00814 3.33962 3.39196 3.43868 3.55537 3.81019 3.85789 3.95871 4.03375 4.15168 4.29413 4.37500 4.57013 4.59620 4.68436 4.76974 4.86463 4.87749 4.96496 4.99390 5.00200 5.04990 5.21888 5.37436 5.45453 5.56704 6.21419 6.34921 6.54167 6.58437 6.62832 7.15724 7.29066 8.83330 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002096 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.884354 B =13352.427690 C =14303.828419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.030 0.970 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.235 1.235 13 C 0.501 3.499 14 O -0.572 6.572 15 C 0.062 3.938 16 O -0.339 6.339 17 C 0.526 3.474 18 O -0.515 6.515 19 C -0.185 4.185 20 C 0.179 3.821 21 N -0.488 5.488 22 C 0.142 3.858 23 C -0.149 4.149 24 C -0.131 4.131 25 S 0.168 5.832 26 C -0.242 4.242 27 C 0.048 3.952 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.177 0.823 39 H 0.169 0.831 40 H 0.221 0.779 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -2.164 28.742 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.104 3.896 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.158 1.158 13 C 0.288 3.712 14 O -0.451 6.451 15 C -0.015 4.015 16 O -0.255 6.255 17 C 0.371 3.629 18 O -0.405 6.405 19 C -0.192 4.192 20 C 0.007 3.993 21 N -0.197 5.197 22 C 0.008 3.992 23 C -0.178 4.178 24 C -0.268 4.268 25 S 0.432 5.568 26 C -0.359 4.359 27 C 0.019 3.981 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.194 0.806 39 H 0.187 0.813 40 H 0.238 0.762 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.817 -2.222 29.528 31.883 hybrid contribution 0.488 0.746 -1.983 2.174 sum -11.329 -1.476 27.545 29.820 Atomic orbital electron populations 1.22185 0.93674 1.03925 1.02306 1.21903 0.95889 0.80723 1.04485 1.47957 1.63880 1.15350 1.05242 1.19378 0.95049 0.93198 0.81939 1.21546 0.97031 1.32191 1.06777 0.95187 1.25860 0.96734 0.97205 0.98992 1.70051 1.17439 1.46475 1.24496 0.85723 0.80564 0.78991 0.77727 1.20253 1.20113 1.15829 1.20489 0.78163 0.86698 0.85804 1.90688 1.46680 1.20078 1.87686 1.22914 1.05238 0.91859 0.81455 1.86587 1.78989 1.45271 1.14603 1.20794 0.73990 0.85279 0.82867 1.90832 1.43534 1.19354 1.86791 1.19854 1.11243 0.96664 0.91423 1.23192 0.89003 0.88583 0.98530 1.67710 1.16942 1.36768 0.98275 1.19932 0.95478 0.90921 0.92868 1.19871 1.06041 1.03407 0.88515 1.26038 1.00352 0.96418 1.04010 1.84295 1.67449 1.12953 0.92087 1.23767 1.11287 0.99460 1.01362 1.21129 0.89124 0.99606 0.88223 0.92925 0.88557 0.92152 0.90047 0.88710 0.92627 0.96043 0.92276 0.86420 0.85158 0.80607 0.81322 0.76240 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.09 2.55 5.93 86.38 0.51 3.06 16 3 N -0.59 -23.33 2.46 -826.18 -2.03 -25.36 16 4 C 0.23 10.79 4.23 85.63 0.36 11.15 16 5 C -0.54 -31.31 9.94 25.60 0.25 -31.05 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.60 5.47 84.66 0.46 1.06 16 8 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.95 44.13 27.47 68.60 1.88 46.01 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 13 C 0.50 20.26 7.75 87.66 0.68 20.94 16 14 O -0.57 -28.96 16.08 15.78 0.25 -28.70 16 15 C 0.06 1.82 4.51 71.24 0.32 2.14 16 16 O -0.34 -10.69 9.03 -50.29 -0.45 -11.14 16 17 C 0.53 14.40 7.90 70.24 0.55 14.95 16 18 O -0.51 -14.54 16.20 19.79 0.32 -14.22 16 19 C -0.19 -4.52 5.89 -20.04 -0.12 -4.64 16 20 C 0.18 4.64 10.77 85.35 0.92 5.56 16 21 N -0.49 -12.62 10.39 -188.69 -1.96 -14.58 16 22 C 0.14 2.98 6.96 39.70 0.28 3.26 16 23 C -0.15 -2.04 10.16 21.78 0.22 -1.81 16 24 C -0.13 -1.01 11.08 66.75 0.74 -0.27 16 25 S 0.17 1.77 23.29 -56.49 -1.32 0.46 16 26 C -0.24 -4.44 6.49 22.99 0.15 -4.29 16 27 C 0.05 0.96 9.73 22.89 0.22 1.18 16 28 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 31 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 32 H 0.09 2.12 6.44 -2.39 -0.02 2.11 16 33 H 0.06 2.41 7.13 -2.39 -0.02 2.39 16 34 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.12 3.06 7.40 -2.39 -0.02 3.04 16 37 H 0.13 2.99 7.18 -2.39 -0.02 2.97 16 38 H 0.18 4.67 7.61 -2.91 -0.02 4.64 16 39 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.22 -0.15 8.06 -2.91 -0.02 -0.17 16 41 H 0.17 2.76 7.72 -2.91 -0.02 2.73 16 Total: -1.00 -82.02 371.05 4.31 -77.70 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.02 Total: 10.66 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 6.29 Total: 18.58 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -3.69 Total: -99.35 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: 0.12 Total: -54.06 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.32 Total: 0.46 kcal Total: -82.02 4.31 -77.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745398454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.269 kcal (2) G-P(sol) polarization free energy of solvation -82.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds