Wall clock time and date at job start Wed Apr 1 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47293 * 2 1 4 4 C 1.35576 * 117.00345 * 180.02562 * 3 2 1 5 5 N 1.29774 * 125.65248 * 0.02562 * 4 3 2 6 6 N 1.26256 * 117.69008 * 179.97438 * 5 4 3 7 7 C 1.29478 * 116.57701 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.15480 * 179.73956 * 7 6 5 9 9 O 1.45199 * 109.47285 * 90.01812 * 8 7 6 10 10 C 1.34226 * 117.00321 * 179.97438 * 9 8 7 11 11 O 1.20832 * 119.99459 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00531 * 179.97438 * 10 9 8 13 13 C 1.50697 * 109.47383 * 180.02562 * 12 10 9 14 14 C 1.37644 * 120.12826 * 265.00558 * 13 12 10 15 15 C 1.38603 * 120.24757 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.50306 * 0.02562 * 15 14 13 17 17 C 1.37590 * 120.24978 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12974 * 84.72767 * 13 12 10 19 19 C 1.41399 * 120.24295 * 359.97438 * 18 13 12 20 20 H 1.08001 * 119.99966 * 329.71117 * 19 18 13 21 21 C 1.39945 * 119.99889 * 149.69751 * 19 18 13 22 22 N 1.30823 * 119.99866 * 162.01435 * 21 19 18 23 23 Si 1.86800 * 120.00236 * 342.02424 * 21 19 18 24 24 H 1.48502 * 109.47326 * 95.39657 * 23 21 19 25 25 H 1.48500 * 109.46944 * 215.39791 * 23 21 19 26 26 H 1.48496 * 109.46897 * 335.39489 * 23 21 19 27 27 S 1.71311 * 125.65657 * 179.97438 * 4 3 2 28 28 H 1.08992 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46828 * 300.00239 * 1 2 3 30 30 H 1.08998 * 109.47223 * 60.00050 * 1 2 3 31 31 H 1.09000 * 109.47573 * 240.00191 * 2 1 3 32 32 H 1.08998 * 109.47223 * 119.99950 * 2 1 3 33 33 H 1.08995 * 109.46918 * 210.02407 * 8 7 6 34 34 H 1.08999 * 109.46944 * 330.02467 * 8 7 6 35 35 H 1.08998 * 109.46652 * 300.00761 * 12 10 9 36 36 H 1.09001 * 109.46517 * 60.00208 * 12 10 9 37 37 H 1.08000 * 119.87423 * 359.97438 * 14 13 12 38 38 H 1.07998 * 119.74990 * 179.97438 * 15 14 13 39 39 H 1.08000 * 119.87672 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.12906 * 179.97438 * 17 16 15 41 41 H 0.97004 * 120.00543 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3504 1.5250 -0.0005 5 7 4.2385 0.5787 -0.0015 6 7 5.4552 0.9160 -0.0024 7 6 5.7041 2.1866 -0.0017 8 6 7.0692 2.8251 0.0030 9 8 7.5122 3.0304 -1.3644 10 6 8.7179 3.5948 -1.5361 11 8 9.3813 3.9065 -0.5755 12 6 9.2447 3.8386 -2.9269 13 6 10.6075 4.4764 -2.8432 14 6 10.7349 5.8453 -2.9105 15 6 11.9871 6.4345 -2.8333 16 6 13.1243 5.6545 -2.6883 17 6 13.0208 4.2842 -2.6199 18 6 11.7540 3.6753 -2.6903 19 6 11.6347 2.2684 -2.6136 20 1 10.7454 1.8241 -2.1915 21 6 12.6688 1.4519 -3.0850 22 7 12.7357 0.1999 -2.7114 23 14 13.9540 2.1495 -4.2474 24 1 15.1415 2.5845 -3.4690 25 1 14.3571 1.1057 -5.2236 26 1 13.3848 3.3131 -4.9736 27 16 4.1580 3.0358 -0.0013 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 7.0194 3.7851 0.5169 34 1 7.7736 2.1728 0.5190 35 1 9.3198 2.8899 -3.4583 36 1 8.5649 4.5019 -3.4617 37 1 9.8560 6.4625 -3.0238 38 1 12.0779 7.5093 -2.8873 39 1 14.0950 6.1243 -2.6296 40 1 13.9079 3.6785 -2.5074 41 1 13.4527 -0.3661 -3.0378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777164296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:28 Heat of formation + Delta-G solvation = -34.683041 kcal Electronic energy + Delta-G solvation = -26587.060365 eV Core-core repulsion = 22560.077636 eV Total energy + Delta-G solvation = -4026.982730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58253 -40.07181 -39.19899 -37.94693 -36.08316 -33.62767 -32.71235 -32.11433 -31.57909 -30.37379 -28.47649 -27.14473 -25.46062 -24.85774 -23.72753 -21.64442 -21.16589 -20.74638 -19.73775 -19.48118 -18.15292 -17.39975 -17.36180 -17.06425 -16.32722 -15.92461 -15.61553 -15.25783 -15.09288 -14.48127 -14.33729 -14.10613 -13.76200 -13.50121 -13.32315 -13.12427 -12.97960 -12.72952 -12.42012 -12.19235 -12.15083 -11.94597 -11.48247 -11.43559 -11.27688 -10.88104 -10.84244 -10.78055 -10.66619 -10.29164 -10.28302 -10.09046 -9.84983 -9.74788 -9.61242 -9.40284 -9.15202 -7.66544 -7.57068 -6.96119 -4.52389 0.04730 0.15468 0.94994 2.14323 2.47316 2.67781 2.70700 2.81327 3.10925 3.15157 3.27031 3.31272 3.87107 3.96954 4.22488 4.49048 4.49232 4.54472 4.73981 4.86514 5.12894 5.20774 5.29615 5.31026 5.36310 5.53382 5.55295 5.78490 5.85938 6.03625 6.14495 6.25171 6.29947 6.50455 6.67652 6.75110 6.91243 7.16218 7.39107 7.60826 7.70429 7.85531 8.09284 8.24191 8.27969 8.34390 8.62671 8.77960 10.05609 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.002251 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.712824 B =12434.602259 C =13526.867049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.270 6.270 4 C 0.185 3.815 5 N -0.330 5.330 6 N -0.193 5.193 7 C -0.005 4.005 8 C 0.151 3.849 9 O -0.361 6.361 10 C 0.465 3.535 11 O -0.487 6.487 12 C -0.042 4.042 13 C -0.184 4.184 14 C -0.062 4.062 15 C -0.244 4.244 16 C -0.076 4.076 17 C -0.232 4.232 18 C 0.110 3.890 19 C -0.444 4.444 20 H 0.089 0.911 21 C 0.085 3.915 22 N -0.803 5.803 23 Si 0.911 3.089 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.243 1.243 27 S 0.188 5.812 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.732 2.895 3.289 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.175 6.175 4 C -0.131 4.131 5 N -0.185 5.185 6 N -0.032 5.032 7 C -0.287 4.287 8 C 0.073 3.927 9 O -0.278 6.278 10 C 0.307 3.693 11 O -0.371 6.371 12 C -0.080 4.080 13 C -0.185 4.185 14 C -0.081 4.081 15 C -0.264 4.264 16 C -0.094 4.094 17 C -0.251 4.251 18 C 0.107 3.893 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.135 4.135 22 N -0.427 5.427 23 Si 0.737 3.263 24 H -0.197 1.197 25 H -0.219 1.219 26 H -0.166 1.166 27 S 0.429 5.571 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.737 2.565 3.635 20.232 hybrid contribution 0.627 -0.269 -0.197 0.710 sum -19.110 2.296 3.438 19.552 Atomic orbital electron populations 1.21831 0.91956 1.03493 1.03643 1.22991 0.95586 0.79822 1.03531 1.86324 1.12023 1.31693 1.87438 1.27419 0.91133 0.94972 0.99542 1.71555 0.95110 1.28690 1.23112 1.71224 1.08430 1.12865 1.10705 1.29425 0.99086 0.91671 1.08483 1.20948 0.87232 1.00769 0.83777 1.86588 1.37239 1.74908 1.29105 1.24475 0.77423 0.73302 0.94107 1.90673 1.56672 1.47152 1.42615 1.20018 0.94996 1.03809 0.89138 1.19036 0.92173 0.92857 1.14480 1.20450 0.96084 0.93582 0.97952 1.20331 0.92792 0.97466 1.15773 1.20628 0.96789 0.93956 0.98026 1.21008 0.97101 0.94107 1.12891 1.17483 0.90533 0.93336 0.87915 1.19449 1.03750 0.89395 1.34651 0.89278 1.26183 0.97377 0.94545 0.95396 1.69705 1.30453 1.07329 1.35172 0.86320 0.80293 0.79413 0.80228 1.19684 1.21856 1.16593 1.84927 0.99184 1.04033 1.68944 0.89617 0.91361 0.91296 0.90681 0.90761 0.88530 0.87240 0.86833 0.88893 0.88858 0.88856 0.88880 0.88195 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.45 6.32 37.16 0.23 0.69 16 3 O -0.27 -2.75 10.20 -18.42 -0.19 -2.94 16 4 C 0.19 2.21 8.25 51.89 0.43 2.64 16 5 N -0.33 -4.75 10.94 29.24 0.32 -4.43 16 6 N -0.19 -3.01 11.65 33.57 0.39 -2.62 16 7 C -0.01 -0.07 7.44 -13.27 -0.10 -0.17 16 8 C 0.15 2.13 6.09 36.01 0.22 2.35 16 9 O -0.36 -6.03 10.20 -39.25 -0.40 -6.43 16 10 C 0.46 8.94 7.55 36.01 0.27 9.22 16 11 O -0.49 -10.80 15.78 -18.75 -0.30 -11.10 16 12 C -0.04 -0.79 5.30 -29.04 -0.15 -0.95 16 13 C -0.18 -4.08 4.43 -103.91 -0.46 -4.54 16 14 C -0.06 -1.28 9.66 -39.66 -0.38 -1.67 16 15 C -0.24 -5.04 10.05 -39.29 -0.39 -5.44 16 16 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 17 C -0.23 -5.62 7.17 -38.88 -0.28 -5.90 16 18 C 0.11 2.76 5.10 -106.82 -0.54 2.21 16 19 C -0.44 -11.76 8.56 -37.74 -0.32 -12.08 16 20 H 0.09 2.48 6.99 -52.49 -0.37 2.12 16 21 C 0.08 2.19 5.41 -17.34 -0.09 2.10 16 22 N -0.80 -21.34 13.93 55.55 0.77 -20.56 16 23 Si 0.91 20.57 24.52 -169.99 -4.17 16.40 16 24 H -0.27 -5.99 6.71 56.52 0.38 -5.61 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.24 -5.55 6.85 56.52 0.39 -5.17 16 27 S 0.19 1.97 23.31 -107.50 -2.51 -0.54 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 34 H 0.11 1.62 8.13 -51.93 -0.42 1.19 16 35 H 0.11 2.17 7.15 -51.93 -0.37 1.80 16 36 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 37 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.10 2.42 4.74 -52.49 -0.25 2.17 16 41 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -31.12 369.21 -6.91 -38.02 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.80 Total: 2.58 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.59 Total: -13.95 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 1.48 Total: -27.61 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.88 Total: -20.47 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.17 Total: 16.40 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.51 Total: -0.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.12 -6.91 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.341 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds