Wall clock time and date at job start Wed Apr 1 2020 04:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48495 * 109.47100 * 240.00520 * 3 2 1 5 5 H 1.48503 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46984 * 120.00376 * 3 2 1 7 7 C 1.38652 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99817 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 C 1.50697 * 109.47110 * 269.72206 * 15 14 13 17 17 O 1.21282 * 120.00050 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99917 * 180.02562 * 16 15 14 19 19 C 1.39002 * 119.99730 * 180.02562 * 18 16 15 20 20 N 1.29628 * 124.94696 * 0.02562 * 19 18 16 21 21 C 1.31990 * 116.91935 * 180.02562 * 20 19 18 22 22 C 1.33442 * 114.56400 * 359.97438 * 21 20 19 23 23 C 1.50705 * 125.96521 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.46830 * 90.00144 * 23 22 21 25 25 O 1.42907 * 109.46889 * 180.02562 * 24 23 22 26 26 S 1.70966 * 124.94187 * 179.71891 * 19 18 16 27 27 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 28 28 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 30 30 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 32 32 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 33 33 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 34 34 H 0.96997 * 120.00045 * 359.97438 * 18 16 15 35 35 H 1.07994 * 122.71653 * 180.02562 * 21 20 19 36 36 H 1.08993 * 109.47317 * 209.99990 * 23 22 21 37 37 H 1.08998 * 109.47020 * 330.00390 * 23 22 21 38 38 H 1.08995 * 109.47145 * 299.99486 * 24 23 22 39 39 H 1.08998 * 109.47118 * 60.00306 * 24 23 22 40 40 H 0.96692 * 113.99724 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.03312 * 180.23431 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4574 -3.4395 0.0925 12 6 4.2025 -4.5969 0.2012 13 6 3.5687 -5.8197 0.3282 14 6 2.1876 -5.8885 0.3361 15 6 1.5012 -7.2234 0.4693 16 6 1.2651 -7.8058 -0.9004 17 8 1.6190 -7.1966 -1.8876 18 7 0.6598 -9.0032 -1.0283 19 6 0.4426 -9.5406 -2.2917 20 7 0.7821 -8.9751 -3.4076 21 6 0.4984 -9.6280 -4.5191 22 6 -0.1094 -10.8014 -4.3333 23 6 -0.5464 -11.7531 -5.4170 24 6 0.5893 -12.7309 -5.7255 25 8 0.1751 -13.6330 -6.7536 26 16 -0.3047 -11.0472 -2.5998 27 6 1.4367 -4.7343 0.2278 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4844 -0.0016 30 1 5.2813 -4.5468 0.1915 31 1 4.1537 -6.7232 0.4175 32 1 2.1305 -7.8995 1.0481 33 1 0.5460 -7.0917 0.9777 34 1 0.3765 -9.4903 -0.2388 35 1 0.7393 -9.2441 -5.4993 36 1 -1.4225 -12.3081 -5.0817 37 1 -0.7954 -11.1900 -6.3164 38 1 1.4654 -12.1759 -6.0610 39 1 0.8383 -13.2940 -4.8261 40 1 0.8470 -14.2831 -7.0005 41 1 0.3580 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808256708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:14 Heat of formation + Delta-G solvation = -32.142809 kcal Electronic energy + Delta-G solvation = -26073.013200 eV Core-core repulsion = 22046.140623 eV Total energy + Delta-G solvation = -4026.872577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66645 -39.39232 -38.70168 -37.45818 -36.50679 -35.11273 -33.08849 -32.36797 -31.97034 -29.25987 -28.31811 -27.11737 -25.37487 -24.93198 -23.24160 -22.03579 -21.57824 -20.68539 -19.65589 -18.87174 -17.82164 -17.59712 -17.07723 -16.75740 -16.46558 -15.91322 -15.40297 -15.11984 -14.87336 -14.78063 -14.48270 -14.38268 -14.04208 -13.89684 -13.46330 -13.42262 -13.15835 -12.72484 -12.62779 -12.42176 -12.02238 -11.83654 -11.55596 -11.51906 -11.24800 -10.84761 -10.82754 -10.78241 -10.61433 -10.44775 -10.43938 -10.30070 -9.50201 -9.38204 -9.31048 -8.79983 -8.41792 -8.06736 -7.19610 -6.40481 -3.99602 0.46791 0.68622 1.35296 2.07342 2.40720 2.43984 2.77530 2.94031 3.15997 3.17213 3.19725 3.74021 4.00035 4.21831 4.53685 4.58754 4.67317 4.80318 4.83853 5.03284 5.05531 5.11121 5.16739 5.19364 5.44236 5.51434 5.58827 5.62285 5.69320 5.75375 5.94053 6.08211 6.19246 6.35428 6.64777 6.82551 6.93700 7.09514 7.12748 7.26143 7.38864 7.46580 7.65558 7.84265 8.04217 8.09297 9.05008 9.75578 10.77626 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.001870 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.549580 B =14968.393530 C =15528.045890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.038 4.038 15 C -0.086 4.086 16 C 0.503 3.497 17 O -0.444 6.444 18 N -0.642 5.642 19 C 0.284 3.716 20 N -0.476 5.476 21 C 0.081 3.919 22 C -0.251 4.251 23 C -0.033 4.033 24 C 0.079 3.921 25 O -0.575 6.575 26 S 0.111 5.889 27 C -0.173 4.173 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.421 0.579 35 H 0.178 0.822 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.382 0.618 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -27.009 -3.642 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.101 3.899 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.039 4.039 15 C -0.126 4.126 16 C 0.287 3.713 17 O -0.309 6.309 18 N -0.295 5.295 19 C -0.085 4.085 20 N -0.196 5.196 21 C -0.070 4.070 22 C -0.373 4.373 23 C -0.073 4.073 24 C 0.001 3.999 25 O -0.381 6.381 26 S 0.362 5.638 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.258 0.742 35 H 0.195 0.805 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.230 0.770 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.043 -26.114 -3.600 26.361 hybrid contribution 1.121 0.646 -0.407 1.356 sum 1.164 -25.468 -4.006 25.807 Atomic orbital electron populations 1.70032 1.05935 1.27686 1.46238 1.25277 0.95842 0.98785 0.96625 0.85786 0.78688 0.79825 0.79156 1.19528 1.20308 1.19523 1.21269 0.91755 0.80846 1.52890 0.89162 1.83976 1.34224 1.11377 1.78642 1.19268 0.90254 0.87983 0.92412 1.21194 0.93834 0.99013 1.10688 1.20678 0.98420 0.92301 0.97880 1.20342 0.93210 0.96986 1.10878 1.18588 0.93256 0.91480 1.00593 1.20578 1.03101 0.96118 0.92839 1.21283 0.77491 0.79556 0.92955 1.90889 1.43848 1.56807 1.39312 1.43459 1.60228 1.21701 1.04064 1.23782 0.99839 0.94532 0.90370 1.66620 1.23414 1.33341 0.96269 1.21674 0.97168 0.90653 0.97529 1.25352 1.13855 1.02475 0.95619 1.19735 0.97897 0.94427 0.95244 1.22205 0.96514 0.91044 0.90157 1.86435 1.45374 1.48503 1.57807 1.83833 1.59184 1.18168 1.02637 1.19942 0.99075 0.89988 1.10189 0.92035 0.85565 0.87414 0.87890 0.87840 0.87677 0.74196 0.80476 0.89982 0.88884 0.93059 0.93467 0.77035 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 8 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 9 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 10 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.23 -5.17 9.17 -39.39 -0.36 -5.53 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.20 -3.49 9.70 -39.54 -0.38 -3.87 16 14 C -0.04 -0.69 4.37 -104.65 -0.46 -1.15 16 15 C -0.09 -1.07 5.83 -29.04 -0.17 -1.24 16 16 C 0.50 7.30 7.78 -10.98 -0.09 7.21 16 17 O -0.44 -8.92 14.67 5.56 0.08 -8.84 16 18 N -0.64 -6.88 5.40 -13.07 -0.07 -6.95 16 19 C 0.28 3.47 8.02 -87.34 -0.70 2.77 16 20 N -0.48 -7.17 8.65 -15.12 -0.13 -7.30 16 21 C 0.08 0.94 11.24 -19.16 -0.22 0.73 16 22 C -0.25 -2.31 5.84 -35.98 -0.21 -2.52 16 23 C -0.03 -0.24 6.12 -27.88 -0.17 -0.41 16 24 C 0.08 0.51 7.03 37.16 0.26 0.77 16 25 O -0.58 -3.89 13.66 -35.23 -0.48 -4.37 16 26 S 0.11 0.94 23.22 -107.50 -2.50 -1.55 16 27 C -0.17 -3.77 9.65 -39.40 -0.38 -4.15 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 30 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.42 2.52 8.82 -40.82 -0.36 2.16 16 35 H 0.18 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.38 0.90 9.12 45.56 0.42 1.31 16 41 H 0.11 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -38.68 374.36 -8.92 -47.60 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.87 Total: 5.69 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.33 Total: -15.52 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.56 Total: -39.32 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.40 Total: -18.47 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.68 -8.92 -47.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808256708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.461 kcal (2) G-P(sol) polarization free energy of solvation -38.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds