Wall clock time and date at job start Wed Apr 1 2020 04:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47293 * 240.00080 * 3 2 1 5 5 H 1.48493 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46957 * 120.00136 * 3 2 1 7 7 C 1.37875 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99842 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99880 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47239 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47058 * 64.99881 * 12 11 10 14 14 C 1.34227 * 116.99924 * 179.97438 * 13 12 11 15 15 O 1.20820 * 120.00169 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99796 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.46813 * 179.97438 * 16 14 13 18 18 C 1.33859 * 122.07843 * 125.00536 * 17 16 14 19 19 S 1.76262 * 108.19267 * 179.97438 * 18 17 16 20 20 C 1.76175 * 89.83067 * 359.97438 * 19 18 17 21 21 C 1.47829 * 125.47126 * 179.97438 * 20 19 18 22 22 C 1.39530 * 119.74651 * 0.02672 * 21 20 19 23 23 C 1.38359 * 119.05611 * 179.97438 * 22 21 20 24 24 C 1.38818 * 118.52433 * 0.02562 * 23 22 21 25 25 C 1.38287 * 119.40021 * 0.27745 * 24 23 22 26 26 N 1.31726 * 120.91594 * 359.41824 * 25 24 23 27 27 N 1.30237 * 109.05800 * 0.22876 * 20 19 18 28 28 H 0.97003 * 119.99613 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47095 * 60.00712 * 9 7 2 30 30 H 1.09000 * 109.47423 * 299.99938 * 9 7 2 31 31 H 1.08999 * 109.46968 * 60.00001 * 11 10 9 32 32 H 1.09004 * 109.46824 * 299.99802 * 11 10 9 33 33 H 1.09002 * 109.47127 * 305.00324 * 12 11 10 34 34 H 1.08993 * 109.47112 * 184.99907 * 12 11 10 35 35 H 1.09005 * 109.46791 * 60.00316 * 16 14 13 36 36 H 1.08997 * 109.47634 * 300.00473 * 16 14 13 37 37 H 1.07995 * 125.90444 * 0.02562 * 18 17 16 38 38 H 1.08000 * 120.47345 * 359.97438 * 22 21 20 39 39 H 1.07994 * 120.74167 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.29626 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.54318 * 179.70439 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5852 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0017 13 8 3.3993 -5.8892 1.2390 14 6 4.3933 -6.7770 1.3981 15 8 4.6282 -7.5831 0.5293 16 6 5.2172 -6.7676 2.6600 17 6 6.2580 -7.8551 2.5885 18 6 7.5625 -7.6025 2.7504 19 16 8.4407 -9.1230 2.5970 20 6 6.9192 -9.9681 2.3234 21 6 6.7752 -11.4198 2.0843 22 6 7.9082 -12.2339 2.0643 23 6 7.7569 -13.5907 1.8398 24 6 6.4773 -14.0912 1.6418 25 6 5.3985 -13.2264 1.6683 26 7 5.5683 -11.9391 1.8898 27 7 5.9423 -9.1077 2.3603 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8897 31 1 0.9452 -4.9821 -0.8913 32 1 0.9446 -4.9827 0.8887 33 1 3.3215 -5.7952 -0.8435 34 1 2.1819 -6.9374 -0.0917 35 1 4.5687 -6.9417 3.5186 36 1 5.7085 -5.8004 2.7660 37 1 8.0010 -6.6345 2.9428 38 1 8.8894 -11.8109 2.2218 39 1 8.6151 -14.2459 1.8190 40 1 6.3262 -15.1457 1.4637 41 1 4.4024 -13.6126 1.5098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:28 Heat of formation + Delta-G solvation = -46.398742 kcal Electronic energy + Delta-G solvation = -25828.771098 eV Core-core repulsion = 21801.280337 eV Total energy + Delta-G solvation = -4027.490761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80142 -40.35844 -39.40939 -36.96972 -35.88114 -33.52231 -32.85294 -32.75056 -31.43807 -30.05818 -28.54701 -26.87249 -26.00402 -24.03250 -23.18830 -22.41066 -22.09033 -20.98386 -19.60076 -18.54033 -17.64354 -17.17250 -16.61799 -16.54267 -16.44149 -16.21012 -15.98590 -15.30551 -15.08614 -14.99937 -14.57447 -14.31319 -14.04925 -13.81053 -13.65266 -13.48970 -13.31322 -13.20643 -12.53094 -12.42494 -12.20953 -11.91772 -11.69888 -11.37717 -10.90077 -10.82839 -10.72132 -10.51144 -10.31341 -10.27838 -10.13892 -10.02256 -9.93138 -9.87804 -9.59195 -9.12253 -8.84945 -8.71144 -8.18852 -6.10336 -4.12031 -0.21875 0.76851 0.85552 0.99310 1.26269 2.39556 2.44567 3.02693 3.32882 3.35418 3.37977 3.39338 3.46913 3.97552 4.33096 4.34176 4.36459 4.54358 4.56396 4.71976 4.76411 4.85224 4.97776 5.01727 5.16821 5.22368 5.26045 5.30712 5.34461 5.48425 5.53079 5.64094 5.76666 5.93216 5.99307 6.13432 6.15911 6.71952 7.08327 7.36287 7.42348 7.60320 7.79275 7.99529 8.14590 8.55183 9.00268 9.52522 11.01137 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.001747 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.722184 B =16022.002643 C =17110.230766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.077 3.923 13 O -0.342 6.342 14 C 0.462 3.538 15 O -0.497 6.497 16 C -0.041 4.041 17 C 0.077 3.923 18 C -0.227 4.227 19 S 0.104 5.896 20 C 0.105 3.895 21 C 0.197 3.803 22 C -0.153 4.153 23 C -0.071 4.071 24 C -0.165 4.165 25 C 0.107 3.893 26 N -0.442 5.442 27 N -0.401 5.401 28 H 0.265 0.735 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.188 0.812 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.870 -28.493 7.508 34.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.259 6.259 14 C 0.304 3.696 15 O -0.384 6.384 16 C -0.081 4.081 17 C -0.057 4.057 18 C -0.367 4.367 19 S 0.359 5.641 20 C -0.172 4.172 21 C 0.057 3.943 22 C -0.175 4.175 23 C -0.096 4.096 24 C -0.186 4.186 25 C -0.052 4.052 26 N -0.152 5.152 27 N -0.113 5.113 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.205 0.795 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 17.769 -28.439 7.214 34.301 hybrid contribution 0.124 0.943 -0.184 0.969 sum 17.893 -27.496 7.029 33.550 Atomic orbital electron populations 1.69952 1.06090 1.27271 1.50447 1.24948 0.94990 0.99421 0.95136 0.86382 0.79299 0.81873 0.78829 1.20043 1.21157 1.19997 1.21011 0.94050 0.89325 1.50962 0.91575 1.20233 0.88763 0.83502 0.95509 1.87912 1.35320 1.12635 1.95230 1.22326 0.93306 0.85400 1.00536 1.23179 0.93583 0.98734 0.84204 1.86569 1.43579 1.54069 1.41649 1.23143 0.79473 0.78336 0.88662 1.90689 1.67464 1.37201 1.43057 1.19874 0.94826 0.97518 0.95923 1.19572 0.92513 0.91268 1.02302 1.26974 0.96130 1.02800 1.10755 1.84728 1.12205 1.00138 1.67060 1.25313 0.90160 0.95830 1.05856 1.18531 0.89549 0.88807 0.97405 1.21985 0.98920 0.94667 1.01935 1.21501 0.98047 0.94600 0.95497 1.22348 0.93548 1.01832 1.00860 1.22915 0.99812 0.87990 0.94476 1.67761 1.24025 1.14211 1.09211 1.66216 1.33151 1.00756 1.11195 0.92594 0.97626 0.97476 0.92016 0.93159 0.90661 0.90444 0.85766 0.85578 0.79499 0.84531 0.84018 0.84167 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.93 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -15.32 9.43 -34.44 -0.32 -15.64 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.38 5.69 36.01 0.20 5.59 16 10 O -0.39 -9.67 10.30 -38.80 -0.40 -10.07 16 11 C 0.06 1.18 6.33 37.16 0.24 1.41 16 12 C 0.08 1.30 5.84 37.16 0.22 1.52 16 13 O -0.34 -5.98 10.19 -42.02 -0.43 -6.41 16 14 C 0.46 7.37 7.92 36.01 0.29 7.66 16 15 O -0.50 -9.29 15.17 -18.75 -0.28 -9.58 16 16 C -0.04 -0.47 6.28 -29.03 -0.18 -0.66 16 17 C 0.08 0.95 5.61 -84.41 -0.47 0.47 16 18 C -0.23 -2.13 11.03 29.19 0.32 -1.81 16 19 S 0.10 0.90 22.37 -107.50 -2.40 -1.51 16 20 C 0.11 1.29 7.42 -14.31 -0.11 1.18 16 21 C 0.20 2.21 6.75 -83.04 -0.56 1.65 16 22 C -0.15 -1.15 9.64 -39.06 -0.38 -1.53 16 23 C -0.07 -0.39 10.16 -39.32 -0.40 -0.79 16 24 C -0.16 -0.93 10.11 -39.35 -0.40 -1.33 16 25 C 0.11 0.89 11.17 -17.58 -0.20 0.69 16 26 N -0.44 -5.44 10.26 -9.85 -0.10 -5.55 16 27 N -0.40 -5.81 9.57 -7.56 -0.07 -5.88 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 34 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.13 1.10 8.01 -51.93 -0.42 0.68 16 37 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.14 0.74 7.29 -52.49 -0.38 0.35 16 39 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 40 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -38.22 381.48 -9.07 -47.29 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.99 Total: -4.70 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.85 Total: -0.05 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.56 Total: -37.64 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.11 Total: -26.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.40 Total: -1.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.22 -9.07 -47.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.895 kcal (2) G-P(sol) polarization free energy of solvation -38.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds