Wall clock time and date at job start Wed Apr 1 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.12927 * 2 1 4 4 C 1.53202 * 110.10416 * 121.59962 * 2 1 3 5 5 N 1.46444 * 113.70544 * 146.74188 * 4 2 1 6 6 C 1.34779 * 126.08033 * 178.24781 * 5 4 2 7 7 O 1.21668 * 120.00249 * 358.29741 * 6 5 4 8 8 C 1.46893 * 119.99728 * 178.29988 * 6 5 4 9 9 C 1.36120 * 125.43599 * 17.27298 * 8 6 5 10 10 C 1.41700 * 107.74636 * 179.97438 * 9 8 6 11 11 C 1.40026 * 133.35011 * 180.02562 * 10 9 8 12 12 C 1.36581 * 119.82895 * 179.97438 * 11 10 9 13 13 C 1.38852 * 120.60203 * 0.02562 * 12 11 10 14 14 C 1.37849 * 120.63168 * 0.02562 * 13 12 11 15 15 C 1.39086 * 119.81403 * 359.95564 * 14 13 12 16 16 N 1.37842 * 133.15892 * 180.35167 * 15 14 13 17 17 C 1.36882 * 125.62428 * 359.94994 * 16 15 14 18 18 H 1.07999 * 120.00703 * 215.16610 * 17 16 15 19 19 C 1.39016 * 119.99851 * 35.16525 * 17 16 15 20 20 N 1.31352 * 119.99966 * 18.32575 * 19 17 16 21 21 Si 1.86804 * 120.00030 * 198.32642 * 19 17 16 22 22 H 1.48496 * 109.47186 * 60.00136 * 21 19 17 23 23 H 1.48504 * 109.46870 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46897 * 299.99694 * 21 19 17 25 25 S 1.67283 * 107.83560 * 358.50856 * 5 4 2 26 26 O 1.42100 * 105.40727 * 94.73191 * 25 5 4 27 27 O 1.42095 * 105.40998 * 224.99406 * 25 5 4 28 28 C 1.55565 * 110.09854 * 238.40891 * 2 1 3 29 29 H 1.08995 * 109.46972 * 299.85539 * 1 2 3 30 30 H 1.08997 * 109.46964 * 59.85455 * 1 2 3 31 31 H 1.09002 * 109.46948 * 179.85552 * 1 2 3 32 32 H 1.09006 * 108.64047 * 25.62856 * 4 2 1 33 33 H 1.08994 * 108.64629 * 267.85662 * 4 2 1 34 34 H 1.07993 * 126.12805 * 359.94803 * 9 8 6 35 35 H 1.07996 * 120.08350 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.69829 * 179.97438 * 12 11 10 37 37 H 1.07997 * 119.68487 * 179.97438 * 13 12 11 38 38 H 1.08002 * 120.08970 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00255 * 182.98763 * 20 19 17 40 40 H 1.08996 * 111.36839 * 321.42118 * 28 2 1 41 41 H 1.09000 * 111.36632 * 86.16621 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9051 1.0234 0.0000 4 6 2.0566 -0.7538 1.2254 5 7 3.3119 -1.4679 0.9827 6 6 4.0084 -2.1799 1.8907 7 8 3.6185 -2.2457 3.0413 8 6 5.2384 -2.8766 1.4911 9 6 5.9553 -2.6268 0.3613 10 6 7.0642 -3.5089 0.3497 11 6 8.1248 -3.7080 -0.5427 12 6 9.0676 -4.6595 -0.2760 13 6 8.9849 -5.4339 0.8736 14 6 7.9496 -5.2571 1.7665 15 6 6.9778 -4.2940 1.5166 16 7 5.8546 -3.8874 2.2045 17 6 5.4201 -4.4011 3.3965 18 1 4.3618 -4.4860 3.5944 19 6 6.3411 -4.8138 4.3525 20 7 7.5852 -4.3973 4.2887 21 14 5.8094 -5.9605 5.7279 22 1 5.3030 -7.2296 5.1464 23 1 6.9699 -6.2485 6.6086 24 1 4.7330 -5.3155 6.5218 25 16 3.7313 -1.2367 -0.6201 26 8 4.6215 -0.1291 -0.6214 27 8 4.1215 -2.5172 -1.0968 28 6 2.0646 -0.7653 -1.2444 29 1 -0.3633 0.5116 0.8912 30 1 -0.3633 0.5161 -0.8887 31 1 -0.3633 -1.0277 -0.0026 32 1 1.3019 -1.4735 1.5426 33 1 2.2127 -0.0394 2.0335 34 1 5.7208 -1.8890 -0.3915 35 1 8.1970 -3.1107 -1.4395 36 1 9.8845 -4.8116 -0.9659 37 1 9.7383 -6.1824 1.0696 38 1 7.8936 -5.8646 2.6577 39 1 8.2380 -4.7192 4.9299 40 1 1.4559 -1.6427 -1.4628 41 1 2.1373 -0.1102 -2.1125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835574638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:17 Heat of formation + Delta-G solvation = -8.503784 kcal Electronic energy + Delta-G solvation = -29494.170982 eV Core-core repulsion = 25468.323470 eV Total energy + Delta-G solvation = -4025.847512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54086 -39.12501 -37.41490 -36.87854 -36.10243 -35.73776 -33.92855 -33.36443 -30.65033 -28.97293 -28.69909 -28.04102 -26.33178 -24.89175 -23.18487 -21.51356 -21.24139 -20.46259 -20.13025 -18.65541 -17.98857 -17.18141 -16.62868 -16.44605 -15.94034 -15.38400 -15.18739 -14.97081 -14.74734 -14.63468 -14.36893 -13.70396 -13.56290 -13.32358 -13.05612 -12.91953 -12.87766 -12.70379 -12.52885 -12.15986 -11.97003 -11.88396 -11.79522 -11.63948 -11.50679 -11.27632 -11.21856 -11.14035 -10.72071 -10.63274 -10.43100 -10.24942 -9.74884 -9.66823 -9.53576 -9.04183 -8.56274 -7.16906 -6.84089 -6.50631 -4.38076 0.04174 1.74070 2.21968 2.83735 2.94093 3.05407 3.08212 3.09398 3.35646 3.52598 3.83638 3.91048 4.11484 4.25737 4.36412 4.53794 4.71929 4.78297 4.96546 5.01850 5.16476 5.18342 5.25332 5.38309 5.55520 5.62790 5.70854 5.76283 5.91605 5.99507 6.07988 6.30270 6.57184 6.59531 6.77667 6.93775 7.02406 7.11445 7.21053 7.46453 7.65338 7.70834 7.95751 8.09795 8.30446 8.41465 8.82329 9.30350 10.20946 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.004843 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.648103 B = 5779.766532 C = 7629.230154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.108 0.892 4 C 0.070 3.930 5 N -0.925 5.925 6 C 0.627 3.373 7 O -0.489 6.489 8 C -0.053 4.053 9 C -0.183 4.183 10 C -0.116 4.116 11 C -0.087 4.087 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.045 4.045 15 C 0.087 3.913 16 N -0.220 5.220 17 C -0.333 4.333 18 H 0.115 0.885 19 C 0.050 3.950 20 N -0.814 5.814 21 Si 0.933 3.067 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.264 1.264 25 S 2.550 3.450 26 O -0.933 6.933 27 O -0.913 6.913 28 C -0.595 4.595 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.284 0.716 40 H 0.146 0.854 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 5.953 -9.105 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.126 0.874 4 C -0.055 4.055 5 N -0.771 5.771 6 C 0.419 3.581 7 O -0.360 6.360 8 C -0.170 4.170 9 C -0.211 4.211 10 C -0.121 4.121 11 C -0.106 4.106 12 C -0.174 4.174 13 C -0.173 4.173 14 C -0.065 4.065 15 C -0.029 4.029 16 N 0.120 4.880 17 C -0.462 4.462 18 H 0.132 0.868 19 C -0.163 4.163 20 N -0.443 5.443 21 Si 0.756 3.244 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.189 1.189 25 S 2.645 3.355 26 O -0.923 6.923 27 O -0.902 6.902 28 C -0.725 4.725 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.165 0.835 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.102 5.644 -8.261 14.218 hybrid contribution -0.820 -0.101 0.784 1.139 sum -10.921 5.544 -7.477 14.350 Atomic orbital electron populations 1.21729 0.91254 1.03254 1.03081 1.22030 0.99801 1.00094 0.89602 0.87385 1.21865 0.86120 0.97959 0.99534 1.56005 1.31619 1.58556 1.30886 1.16846 0.81586 0.76085 0.83600 1.90758 1.68169 1.59110 1.17960 1.19032 0.99114 0.99725 0.99094 1.20527 0.98166 1.04841 0.97582 1.17763 0.97362 1.00287 0.96673 1.20049 0.94084 0.98535 0.97945 1.20268 0.99677 0.98994 0.98467 1.20556 0.98872 1.01895 0.96011 1.20176 0.92161 0.96529 0.97626 1.18058 0.92646 1.00210 0.91948 1.39783 1.15643 1.19182 1.13434 1.19949 0.95048 1.40313 0.90861 0.86757 1.25648 0.95098 0.96916 0.98625 1.70038 1.03292 1.35297 1.35684 0.85892 0.78910 0.80094 0.79471 1.18879 1.20067 1.18877 1.07750 0.76681 0.76024 0.75017 1.93695 1.59164 1.54674 1.84761 1.93845 1.79398 1.38406 1.78558 1.31022 1.23171 1.11438 1.06876 0.91204 0.91173 0.91494 0.89095 0.88730 0.86750 0.87731 0.87847 0.87609 0.86490 0.90563 0.83530 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.05 37.16 0.34 -0.41 16 2 C -0.10 -0.76 3.29 -89.15 -0.29 -1.06 16 3 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.84 5.97 -3.97 -0.02 0.81 16 5 N -0.92 -16.15 3.35 -61.48 -0.21 -16.35 16 6 C 0.63 14.55 7.73 -12.76 -0.10 14.45 16 7 O -0.49 -12.27 15.62 5.22 0.08 -12.19 16 8 C -0.05 -1.40 6.45 -82.25 -0.53 -1.93 16 9 C -0.18 -4.63 7.92 -39.02 -0.31 -4.94 16 10 C -0.12 -3.01 6.16 -106.89 -0.66 -3.67 16 11 C -0.09 -1.95 10.06 -39.51 -0.40 -2.34 16 12 C -0.16 -3.18 9.97 -39.95 -0.40 -3.58 16 13 C -0.15 -3.28 10.02 -39.50 -0.40 -3.67 16 14 C -0.05 -1.13 8.45 -39.41 -0.33 -1.46 16 15 C 0.09 2.36 6.10 -83.83 -0.51 1.85 16 16 N -0.22 -6.20 2.86 -56.08 -0.16 -6.36 16 17 C -0.33 -9.22 8.81 -15.01 -0.13 -9.36 16 18 H 0.11 3.13 7.16 -52.49 -0.38 2.76 16 19 C 0.05 1.30 4.45 -17.47 -0.08 1.22 16 20 N -0.81 -21.78 10.49 55.50 0.58 -21.20 16 21 Si 0.93 19.65 29.59 -169.99 -5.03 14.62 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 S 2.55 39.21 4.47 -107.50 -0.48 38.73 16 26 O -0.93 -16.59 17.03 -57.37 -0.98 -17.56 16 27 O -0.91 -17.26 14.25 -57.37 -0.82 -18.07 16 28 C -0.59 -4.90 7.06 38.52 0.27 -4.63 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.12 2.64 3.60 -30.49 -0.11 2.53 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.12 2.92 6.16 -52.49 -0.32 2.60 16 39 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.15 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -36.23 344.50 -9.94 -46.17 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.57 Total: 5.73 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.55 Total: -18.70 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.22 Total: -43.91 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -1.71 Total: -47.83 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Atomic # 16 Polarization: 39.21 SS G_CDS: -0.48 Total: 38.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.23 -9.94 -46.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835574638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.665 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds