Wall clock time and date at job start Wed Apr 1 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47188 * 2 1 4 4 O 1.45204 * 109.46986 * 240.00155 * 2 1 3 5 5 C 1.34816 * 116.99811 * 89.99958 * 4 2 1 6 6 O 1.21547 * 120.00178 * 359.97438 * 5 4 2 7 7 C 1.47035 * 120.00044 * 179.97438 * 5 4 2 8 8 C 1.33867 * 124.65877 * 179.97438 * 7 5 4 9 9 C 1.40071 * 115.49152 * 179.75255 * 8 7 5 10 10 C 1.41735 * 129.97782 * 179.61860 * 9 8 7 11 11 C 1.36039 * 119.33525 * 180.30922 * 10 9 8 12 12 N 1.32307 * 121.57999 * 0.30284 * 11 10 9 13 13 C 1.31351 * 122.06519 * 359.97224 * 12 11 10 14 14 C 1.39749 * 120.59624 * 359.97438 * 13 12 11 15 15 S 1.75543 * 124.65295 * 359.97438 * 7 5 4 16 16 C 1.50696 * 109.47104 * 120.00005 * 2 1 3 17 17 O 1.21285 * 119.99587 * 120.00326 * 16 2 1 18 18 N 1.34770 * 120.00212 * 300.00184 * 16 2 1 19 19 C 1.46498 * 120.00199 * 359.97438 * 18 16 2 20 20 C 1.46504 * 120.00072 * 179.97438 * 18 16 2 21 21 C 1.50705 * 109.46899 * 89.99946 * 20 18 16 22 22 H 1.07999 * 120.00462 * 359.97438 * 21 20 18 23 23 C 1.37875 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31511 * 120.00359 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 120.00118 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46975 * 89.99819 * 25 23 21 27 27 H 1.48492 * 109.47204 * 210.00450 * 25 23 21 28 28 H 1.48501 * 109.46758 * 330.00483 * 25 23 21 29 29 H 1.08998 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46686 * 300.00025 * 1 2 3 31 31 H 1.08999 * 109.47212 * 59.99717 * 1 2 3 32 32 H 1.08000 * 122.25226 * 359.97438 * 8 7 5 33 33 H 1.08002 * 120.33594 * 0.59035 * 10 9 8 34 34 H 1.07994 * 119.21068 * 180.27300 * 11 10 9 35 35 H 1.07994 * 119.70279 * 180.02562 * 13 12 11 36 36 H 1.08997 * 109.46966 * 90.00249 * 19 18 16 37 37 H 1.08994 * 109.47252 * 210.00097 * 19 18 16 38 38 H 1.08994 * 109.47169 * 330.00554 * 19 18 16 39 39 H 1.08995 * 109.47022 * 209.99702 * 20 18 16 40 40 H 1.08995 * 109.46933 * 330.00199 * 20 18 16 41 41 H 0.97000 * 120.00438 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2180 0.0674 -2.2859 6 8 1.9969 1.2621 -2.2552 7 6 2.7080 -0.5580 -3.5232 8 6 2.9417 0.0976 -4.6667 9 6 3.4117 -0.6881 -5.7268 10 6 3.7468 -0.3204 -7.0540 11 6 4.1825 -1.2747 -7.9201 12 7 4.2960 -2.5415 -7.5556 13 6 3.9965 -2.9476 -6.3428 14 6 3.5413 -2.0414 -5.3813 15 16 3.0667 -2.2669 -3.7036 16 6 2.0324 -0.7104 1.2304 17 8 2.7297 -1.6965 1.1191 18 7 1.7068 -0.2500 2.4545 19 6 0.8650 0.9414 2.5890 20 6 2.1947 -0.9410 3.6507 21 6 3.5224 -0.3580 4.0611 22 1 3.9594 0.4464 3.4880 23 6 4.1799 -0.8523 5.1676 24 7 5.3388 -0.3439 5.5255 25 14 3.4246 -2.2442 6.1585 26 1 3.8837 -3.5465 5.6123 27 1 3.8454 -2.1265 7.5777 28 1 1.9441 -2.1659 6.0731 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.7822 1.1613 -4.7642 33 1 3.6614 0.7078 -7.3732 34 1 4.4415 -0.9915 -8.9296 35 1 4.1039 -3.9911 -6.0862 36 1 -0.1831 0.6438 2.6222 37 1 1.1228 1.4665 3.5086 38 1 1.0288 1.6001 1.7363 39 1 1.4767 -0.8154 4.4610 40 1 2.3154 -2.0022 3.4333 41 1 5.8012 -0.6914 6.3042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838169094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:48 Heat of formation + Delta-G solvation = -41.841566 kcal Electronic energy + Delta-G solvation = -26993.248599 eV Core-core repulsion = 22965.955452 eV Total energy + Delta-G solvation = -4027.293147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01755 -40.64749 -39.16861 -37.03111 -36.18420 -35.14171 -32.94560 -31.96477 -31.83633 -30.87706 -28.34504 -26.55647 -26.08959 -24.63624 -24.22449 -22.84875 -21.75976 -20.61739 -19.24513 -18.99627 -17.54264 -17.19647 -17.01152 -16.83485 -16.43020 -16.18683 -15.90428 -15.30729 -14.94252 -14.88957 -14.75865 -14.36795 -14.07659 -13.78537 -13.60768 -13.39779 -13.11872 -12.60686 -12.48896 -12.43676 -12.31247 -12.25816 -11.89907 -11.67040 -11.37507 -11.26399 -11.03974 -10.94109 -10.85904 -10.57476 -10.40830 -10.20522 -10.13179 -9.60387 -9.57576 -9.11616 -8.63823 -8.29830 -7.86723 -6.13262 -4.13193 -0.35631 0.55123 0.88574 1.39756 1.40754 2.11325 2.48533 3.08972 3.25843 3.29039 3.31598 3.33624 3.62274 3.98055 4.12707 4.24076 4.35069 4.42236 4.47000 4.64114 4.81796 4.90328 4.95190 5.01011 5.13481 5.19408 5.20457 5.37183 5.49385 5.52011 5.55896 5.65924 5.69739 5.85972 6.07962 6.10090 6.12247 6.57884 6.83695 7.15783 7.37758 7.44877 7.53476 8.02494 8.39504 8.73695 8.89735 9.45773 10.99960 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002332 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.289323 B =12004.490865 C =12778.268107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.112 0.888 4 O -0.318 6.318 5 C 0.536 3.464 6 O -0.490 6.490 7 C -0.194 4.194 8 C -0.045 4.045 9 C -0.051 4.051 10 C -0.116 4.116 11 C 0.075 3.925 12 N -0.465 5.465 13 C 0.162 3.838 14 C -0.209 4.209 15 S 0.228 5.772 16 C 0.511 3.489 17 O -0.516 6.516 18 N -0.590 5.590 19 C 0.074 3.926 20 C 0.217 3.783 21 C -0.533 4.533 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.266 1.266 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 0.647 -23.569 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.129 0.871 4 O -0.233 6.233 5 C 0.379 3.621 6 O -0.379 6.379 7 C -0.313 4.313 8 C -0.078 4.078 9 C -0.066 4.066 10 C -0.138 4.138 11 C -0.074 4.074 12 N -0.174 5.174 13 C -0.009 4.009 14 C -0.328 4.328 15 S 0.496 5.504 16 C 0.296 3.704 17 O -0.391 6.391 18 N -0.323 5.323 19 C -0.069 4.069 20 C 0.097 3.903 21 C -0.571 4.571 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.102 -1.346 -23.044 24.813 hybrid contribution -0.430 1.492 0.409 1.606 sum -9.531 0.146 -22.635 24.560 Atomic orbital electron populations 1.22434 0.92042 1.04313 1.04616 1.22685 0.95879 0.97815 0.82145 0.87084 1.86661 1.76653 1.40684 1.19331 1.19737 0.74596 0.84802 0.83005 1.90875 1.47959 1.15052 1.83976 1.22906 1.12312 0.99914 0.96169 1.20139 0.96300 1.01965 0.89432 1.18245 1.01253 0.91873 0.95277 1.21796 0.98862 1.01736 0.91381 1.22178 0.96922 0.88013 1.00251 1.67716 1.14102 1.18385 1.17233 1.22397 0.92687 0.99043 0.86791 1.24453 1.08204 0.98697 1.01440 1.84861 1.63198 1.01774 1.00604 1.19709 0.81578 0.85402 0.83745 1.90719 1.36605 1.26006 1.85810 1.47715 1.50094 1.28496 1.06034 1.21931 0.93738 0.87797 1.03454 1.19737 0.95535 0.93730 0.81259 1.21303 1.03086 1.20525 1.12225 0.90729 1.24859 0.94615 0.96469 0.97020 1.69891 1.14706 1.42232 1.26509 0.86842 0.80004 0.83240 0.79553 1.19821 1.20994 1.19025 0.90823 0.88581 0.91113 0.82002 0.83876 0.82127 0.81626 0.92819 0.89978 0.91939 0.94748 0.94315 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.19 37.16 0.34 -1.75 16 2 C 0.07 1.16 2.18 -27.88 -0.06 1.10 16 3 H 0.11 1.70 6.42 -51.93 -0.33 1.37 16 4 O -0.32 -5.21 9.23 -47.49 -0.44 -5.65 16 5 C 0.54 7.86 7.92 34.30 0.27 8.13 16 6 O -0.49 -7.61 15.99 -19.30 -0.31 -7.91 16 7 C -0.19 -2.38 6.33 -37.55 -0.24 -2.61 16 8 C -0.05 -0.46 9.81 -40.43 -0.40 -0.86 16 9 C -0.05 -0.48 5.91 -107.11 -0.63 -1.12 16 10 C -0.12 -0.85 10.13 -39.04 -0.40 -1.24 16 11 C 0.08 0.56 11.06 -18.14 -0.20 0.36 16 12 N -0.46 -4.38 10.34 -13.41 -0.14 -4.52 16 13 C 0.16 1.44 11.24 -17.19 -0.19 1.25 16 14 C -0.21 -2.06 6.54 -38.25 -0.25 -2.31 16 15 S 0.23 2.51 23.05 -107.50 -2.48 0.03 16 16 C 0.51 10.46 7.15 -10.99 -0.08 10.38 16 17 O -0.52 -12.84 16.08 -14.11 -0.23 -13.06 16 18 N -0.59 -11.79 2.86 -182.96 -0.52 -12.31 16 19 C 0.07 1.07 8.80 59.85 0.53 1.59 16 20 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 21 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 22 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 25 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.97 4.53 -51.93 -0.24 0.74 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.16 1.39 7.96 -52.49 -0.42 0.98 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 37 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 39 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 40 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -36.16 366.38 -8.76 -44.93 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.51 Total: -1.56 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.77 Total: 4.63 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.11 Total: -43.47 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.97 Total: -26.63 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.48 Total: 0.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.16 -8.76 -44.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838169094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.084 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds