Wall clock time and date at job start Wed Apr 1 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47188 * 2 1 4 4 O 1.45204 * 109.46986 * 240.00155 * 2 1 3 5 5 C 1.34816 * 116.99811 * 89.99958 * 4 2 1 6 6 O 1.21547 * 120.00178 * 359.97438 * 5 4 2 7 7 C 1.47035 * 120.00044 * 179.97438 * 5 4 2 8 8 C 1.33867 * 124.65877 * 179.97438 * 7 5 4 9 9 C 1.40071 * 115.49152 * 179.75255 * 8 7 5 10 10 C 1.41735 * 129.97782 * 179.61860 * 9 8 7 11 11 C 1.36039 * 119.33525 * 180.30922 * 10 9 8 12 12 N 1.32307 * 121.57999 * 0.30284 * 11 10 9 13 13 C 1.31351 * 122.06519 * 359.97224 * 12 11 10 14 14 C 1.39749 * 120.59624 * 359.97438 * 13 12 11 15 15 S 1.75543 * 124.65295 * 359.97438 * 7 5 4 16 16 C 1.50696 * 109.47104 * 120.00005 * 2 1 3 17 17 O 1.21285 * 119.99587 * 120.00326 * 16 2 1 18 18 N 1.34770 * 120.00212 * 300.00184 * 16 2 1 19 19 C 1.46498 * 120.00199 * 359.97438 * 18 16 2 20 20 C 1.46504 * 120.00072 * 179.97438 * 18 16 2 21 21 C 1.50705 * 109.46899 * 89.99946 * 20 18 16 22 22 H 1.07999 * 120.00462 * 359.97438 * 21 20 18 23 23 C 1.37875 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31511 * 120.00359 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 120.00118 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46975 * 89.99819 * 25 23 21 27 27 H 1.48492 * 109.47204 * 210.00450 * 25 23 21 28 28 H 1.48501 * 109.46758 * 330.00483 * 25 23 21 29 29 H 1.08998 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46686 * 300.00025 * 1 2 3 31 31 H 1.08999 * 109.47212 * 59.99717 * 1 2 3 32 32 H 1.08000 * 122.25226 * 359.97438 * 8 7 5 33 33 H 1.08002 * 120.33594 * 0.59035 * 10 9 8 34 34 H 1.07994 * 119.21068 * 180.27300 * 11 10 9 35 35 H 1.07994 * 119.70279 * 180.02562 * 13 12 11 36 36 H 1.08997 * 109.46966 * 90.00249 * 19 18 16 37 37 H 1.08994 * 109.47252 * 210.00097 * 19 18 16 38 38 H 1.08994 * 109.47169 * 330.00554 * 19 18 16 39 39 H 1.08995 * 109.47022 * 209.99702 * 20 18 16 40 40 H 1.08995 * 109.46933 * 330.00199 * 20 18 16 41 41 H 0.97000 * 120.00438 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2180 0.0674 -2.2859 6 8 1.9969 1.2621 -2.2552 7 6 2.7080 -0.5580 -3.5232 8 6 2.9417 0.0976 -4.6667 9 6 3.4117 -0.6881 -5.7268 10 6 3.7468 -0.3204 -7.0540 11 6 4.1825 -1.2747 -7.9201 12 7 4.2960 -2.5415 -7.5556 13 6 3.9965 -2.9476 -6.3428 14 6 3.5413 -2.0414 -5.3813 15 16 3.0667 -2.2669 -3.7036 16 6 2.0324 -0.7104 1.2304 17 8 2.7297 -1.6965 1.1191 18 7 1.7068 -0.2500 2.4545 19 6 0.8650 0.9414 2.5890 20 6 2.1947 -0.9410 3.6507 21 6 3.5224 -0.3580 4.0611 22 1 3.9594 0.4464 3.4880 23 6 4.1799 -0.8523 5.1676 24 7 5.3388 -0.3439 5.5255 25 14 3.4246 -2.2442 6.1585 26 1 3.8837 -3.5465 5.6123 27 1 3.8454 -2.1265 7.5777 28 1 1.9441 -2.1659 6.0731 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.7822 1.1613 -4.7642 33 1 3.6614 0.7078 -7.3732 34 1 4.4415 -0.9915 -8.9296 35 1 4.1039 -3.9911 -6.0862 36 1 -0.1831 0.6438 2.6222 37 1 1.1228 1.4665 3.5086 38 1 1.0288 1.6001 1.7363 39 1 1.4767 -0.8154 4.4610 40 1 2.3154 -2.0022 3.4333 41 1 5.8012 -0.6914 6.3042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838169094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:48 Heat of formation + Delta-G solvation = -65.153062 kcal Electronic energy + Delta-G solvation = -26994.259461 eV Core-core repulsion = 22965.955452 eV Total energy + Delta-G solvation = -4028.304009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10291 -41.47642 -40.64088 -38.10041 -37.12870 -36.80662 -34.90351 -33.32652 -32.52360 -31.73938 -30.14298 -27.85343 -27.05938 -25.76430 -25.19849 -24.17029 -23.00141 -21.53762 -20.52094 -20.19088 -19.17171 -18.56992 -18.28135 -17.71422 -17.50515 -17.29757 -17.20222 -16.59060 -16.49871 -15.76858 -15.62810 -15.49387 -15.16347 -14.98107 -14.81760 -14.51720 -14.36767 -14.11625 -13.81588 -13.73194 -13.51634 -13.31857 -13.06847 -12.97371 -12.85250 -12.61109 -12.39219 -12.18578 -12.07715 -12.02094 -11.90277 -11.76502 -11.07875 -10.85070 -10.79482 -10.74084 -10.37862 -9.53248 -9.05812 -8.35654 -6.42003 -1.17126 -0.08482 0.07244 0.56355 0.61145 0.98360 1.33259 1.37761 1.45823 1.47916 1.53889 2.21399 2.30247 2.64532 2.98718 3.21714 3.30260 3.39568 3.53870 3.61115 3.71501 3.77319 3.77347 4.21952 4.27386 4.36066 4.43795 4.51322 4.58037 4.61600 4.62947 4.76291 4.81472 4.86636 4.89351 4.98360 5.03694 5.08385 5.41578 5.48662 5.50157 6.17210 6.24170 6.48564 6.59621 6.80971 7.10784 7.25194 8.81334 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002332 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.289323 B =12004.490865 C =12778.268107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.116 0.884 4 O -0.337 6.337 5 C 0.538 3.462 6 O -0.504 6.504 7 C -0.225 4.225 8 C -0.020 4.020 9 C -0.069 4.069 10 C -0.103 4.103 11 C 0.071 3.929 12 N -0.479 5.479 13 C 0.152 3.848 14 C -0.208 4.208 15 S 0.197 5.803 16 C 0.501 3.499 17 O -0.574 6.574 18 N -0.595 5.595 19 C 0.064 3.936 20 C 0.224 3.776 21 C -0.540 4.540 22 H 0.026 0.974 23 C 0.010 3.990 24 N -0.946 5.946 25 Si 0.950 3.050 26 H -0.277 1.277 27 H -0.275 1.275 28 H -0.232 1.232 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 1.125 -25.197 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.253 6.253 5 C 0.382 3.618 6 O -0.394 6.394 7 C -0.343 4.343 8 C -0.054 4.054 9 C -0.084 4.084 10 C -0.125 4.125 11 C -0.078 4.078 12 N -0.188 5.188 13 C -0.019 4.019 14 C -0.327 4.327 15 S 0.465 5.535 16 C 0.288 3.712 17 O -0.454 6.454 18 N -0.327 5.327 19 C -0.077 4.077 20 C 0.102 3.898 21 C -0.579 4.579 22 H 0.044 0.956 23 C -0.188 4.188 24 N -0.585 5.585 25 Si 0.772 3.228 26 H -0.203 1.203 27 H -0.200 1.200 28 H -0.155 1.155 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.197 0.803 33 H 0.195 0.805 34 H 0.211 0.789 35 H 0.200 0.800 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.434 -0.823 -24.679 27.212 hybrid contribution 0.394 1.448 0.704 1.658 sum -11.040 0.625 -23.975 26.402 Atomic orbital electron populations 1.22451 0.88445 1.04976 1.06521 1.22663 0.98387 0.96679 0.80195 0.86606 1.86661 1.77149 1.41556 1.19892 1.20030 0.74088 0.84670 0.83052 1.90846 1.48954 1.15384 1.84243 1.22801 1.15048 1.00450 0.95988 1.20383 0.93705 1.02658 0.88637 1.18492 1.01997 0.91597 0.96276 1.22186 0.96944 1.03457 0.89904 1.22783 0.95966 0.87307 1.01709 1.67781 1.14160 1.19689 1.17201 1.22697 0.92739 0.99850 0.86610 1.24503 1.08279 0.99371 1.00541 1.84880 1.64433 1.01833 1.02336 1.20567 0.80555 0.84895 0.85163 1.90678 1.39168 1.28708 1.86820 1.47791 1.50257 1.29709 1.04941 1.22320 0.95006 0.86121 1.04254 1.19447 0.93921 0.92866 0.83535 1.21544 1.05205 1.19408 1.11741 0.95556 1.25894 0.95017 0.99476 0.98440 1.70052 1.16638 1.44320 1.27531 0.85689 0.80966 0.78516 0.77627 1.20293 1.20049 1.15482 0.90810 0.86377 0.89363 0.80311 0.80468 0.78920 0.80018 0.88495 0.90601 0.89677 0.91980 0.95969 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 9.19 71.98 0.66 -2.91 16 2 C 0.08 2.47 2.18 29.85 0.07 2.54 16 3 H 0.12 3.49 6.42 -2.39 -0.02 3.48 16 4 O -0.34 -11.30 9.23 -50.89 -0.47 -11.77 16 5 C 0.54 15.90 7.92 70.13 0.56 16.45 16 6 O -0.50 -15.41 15.99 19.68 0.31 -15.10 16 7 C -0.22 -5.54 6.33 23.58 0.15 -5.39 16 8 C -0.02 -0.39 9.81 21.72 0.21 -0.18 16 9 C -0.07 -1.19 5.91 -21.48 -0.13 -1.32 16 10 C -0.10 -1.18 10.13 22.62 0.23 -0.95 16 11 C 0.07 0.85 11.06 84.11 0.93 1.78 16 12 N -0.48 -8.12 10.34 -196.34 -2.03 -10.14 16 13 C 0.15 2.56 11.24 85.13 0.96 3.52 16 14 C -0.21 -4.00 6.54 23.13 0.15 -3.85 16 15 S 0.20 4.54 23.05 -56.49 -1.30 3.23 16 16 C 0.50 20.87 7.15 87.66 0.63 21.49 16 17 O -0.57 -29.88 16.08 15.75 0.25 -29.63 16 18 N -0.60 -23.55 2.86 -851.16 -2.43 -25.98 16 19 C 0.06 1.70 8.80 127.77 1.12 2.82 16 20 C 0.22 10.65 4.23 85.63 0.36 11.01 16 21 C -0.54 -31.66 9.94 25.60 0.25 -31.41 16 22 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 23 C 0.01 0.58 5.47 84.65 0.46 1.04 16 24 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 25 Si 0.95 43.81 27.47 68.60 1.88 45.70 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 H -0.23 -9.37 6.54 99.48 0.65 -8.72 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.12 1.95 4.53 -2.39 -0.01 1.94 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.18 2.71 7.96 -2.91 -0.02 2.69 16 33 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.10 1.77 6.95 -2.39 -0.02 1.75 16 37 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.08 1.86 6.01 -2.39 -0.01 1.85 16 39 H 0.06 2.62 7.13 -2.39 -0.02 2.60 16 40 H 0.02 1.13 6.85 -2.39 -0.02 1.12 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -83.90 366.38 4.16 -79.74 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.03 Total: 8.89 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.62 Total: 14.65 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -4.16 Total: -95.72 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: 0.10 Total: -56.49 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.30 Total: 3.23 kcal Total: -83.90 4.16 -79.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838169094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.585 kcal (2) G-P(sol) polarization free energy of solvation -83.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds