Wall clock time and date at job start Wed Apr 1 2020 04:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48496 * 109.46874 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46814 * 299.99766 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99857 * 3 2 1 7 7 C 1.38642 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99952 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.35769 * 116.99740 * 174.51876 * 9 7 2 11 11 C 1.38745 * 120.08943 * 354.19499 * 10 9 7 12 12 C 1.38339 * 119.97665 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.91930 * 180.02562 * 12 11 10 14 14 C 1.38566 * 120.16377 * 0.02562 * 12 11 10 15 15 C 1.38173 * 120.17520 * 359.97438 * 14 12 11 16 16 C 1.38734 * 120.02248 * 0.24565 * 15 14 12 17 17 N 1.39983 * 120.08196 * 179.72723 * 16 15 14 18 18 C 1.34777 * 119.99820 * 34.08873 * 17 16 15 19 19 O 1.21513 * 119.99950 * 5.60511 * 18 17 16 20 20 C 1.48290 * 119.99747 * 185.60856 * 18 17 16 21 21 N 1.31614 * 127.15872 * 0.02562 * 20 18 17 22 22 O 1.21571 * 111.54019 * 179.97438 * 21 20 18 23 23 C 1.32812 * 111.52097 * 359.96375 * 22 21 20 24 24 C 1.35707 * 106.71049 * 359.80398 * 23 22 21 25 25 C 1.50043 * 123.86460 * 179.42651 * 24 23 22 26 26 O 1.43614 * 107.88275 * 345.87291 * 25 24 23 27 27 C 1.42995 * 114.38567 * 49.77505 * 26 25 24 28 28 C 1.50672 * 130.82317 * 180.18276 * 23 22 21 29 29 H 0.97001 * 119.99327 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.01025 * 0.02562 * 11 10 9 31 31 H 1.08000 * 119.91168 * 179.97438 * 14 12 11 32 32 H 1.08004 * 119.99175 * 179.97438 * 15 14 12 33 33 H 0.97000 * 120.00034 * 214.08180 * 17 16 15 34 34 H 1.09002 * 109.95379 * 226.15864 * 25 24 23 35 35 H 1.08998 * 109.60605 * 105.38871 * 25 24 23 36 36 H 1.08999 * 109.40626 * 169.44562 * 27 26 25 37 37 H 1.09003 * 109.33189 * 49.65989 * 27 26 25 38 38 H 1.08993 * 109.83002 * 283.58325 * 28 23 22 39 39 H 1.09007 * 109.82041 * 44.50765 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8911 2.3964 -1.2126 6 1 1.8911 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0695 -3.5041 -0.1145 11 6 3.4354 -3.4286 -0.3458 12 6 4.1818 -4.5875 -0.4621 13 9 5.5119 -4.5127 -0.6868 14 6 3.5687 -5.8249 -0.3486 15 6 2.2088 -5.9077 -0.1182 16 6 1.4523 -4.7503 -0.0049 17 7 0.0735 -4.8328 0.2228 18 6 -0.4262 -5.8312 0.9777 19 8 0.3257 -6.5996 1.5440 20 6 -1.8938 -5.9919 1.1172 21 7 -2.8307 -5.2469 0.5701 22 8 -3.9425 -5.6335 0.8739 23 6 -3.8886 -6.6959 1.6690 24 6 -2.5742 -6.9765 1.8567 25 6 -2.0736 -8.1051 2.7094 26 8 -3.1705 -8.5733 3.5095 27 6 -4.3677 -8.8372 2.7736 28 6 -4.9878 -7.5162 2.2928 29 1 -0.4849 0.8401 0.0004 30 1 3.9159 -2.4655 -0.4343 31 1 4.1553 -6.7271 -0.4405 32 1 1.7339 -6.8738 -0.0307 33 1 -0.5221 -4.1713 -0.1627 34 1 -1.2687 -7.7545 3.3554 35 1 -1.7107 -8.9116 2.0723 36 1 -5.0789 -9.3590 3.4139 37 1 -4.1313 -9.4610 1.9115 38 1 -5.4152 -6.9788 3.1392 39 1 -5.7627 -7.7191 1.5534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857859125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:36 Heat of formation + Delta-G solvation = -51.540180 kcal Electronic energy + Delta-G solvation = -29824.803247 eV Core-core repulsion = 25230.876361 eV Total energy + Delta-G solvation = -4593.926886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.100 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -48.32724 -45.27355 -40.20091 -39.17376 -38.63961 -36.44446 -34.36777 -34.13878 -33.41773 -32.46855 -30.89567 -29.55776 -28.58559 -26.74721 -25.60273 -24.71672 -24.25756 -22.44979 -21.63810 -21.16424 -19.83184 -18.43274 -18.32408 -18.05809 -17.63585 -16.98496 -16.68752 -16.29780 -15.80388 -15.49114 -15.31439 -15.14382 -15.01637 -14.56655 -14.46498 -14.30163 -13.94649 -13.81125 -13.70731 -13.55377 -13.24430 -13.10122 -12.45499 -12.25192 -12.07525 -11.71454 -11.67330 -11.46248 -11.45494 -11.06585 -10.81909 -10.54629 -10.54044 -10.16877 -10.16027 -9.88353 -9.61689 -9.37150 -9.01697 -7.99280 -7.23345 -6.64385 -4.22927 0.96415 1.35386 1.83200 2.03329 2.59128 3.03700 3.04381 3.06365 3.11599 3.21833 3.36742 3.80550 3.92449 4.19041 4.24570 4.39904 4.55041 4.69225 4.77528 4.78737 4.90949 5.02599 5.03533 5.09978 5.24881 5.27191 5.39583 5.48729 5.51529 5.67056 5.76668 5.92269 6.07920 6.40206 6.65574 6.69263 6.81842 6.83188 6.88443 7.10885 7.50961 7.61899 7.78197 7.89277 8.24006 8.80276 9.39677 10.52055 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.003200 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.215146 B = 8748.552226 C =10908.044257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.165 6.165 10 C 0.162 3.838 11 C -0.258 4.258 12 C 0.136 3.864 13 F -0.149 7.149 14 C -0.230 4.230 15 C -0.044 4.044 16 C 0.052 3.948 17 N -0.628 5.628 18 C 0.593 3.407 19 O -0.516 6.516 20 C 0.001 3.999 21 N -0.325 5.325 22 O 0.137 5.863 23 C -0.034 4.034 24 C -0.200 4.200 25 C 0.141 3.859 26 O -0.375 6.375 27 C 0.061 3.939 28 C -0.068 4.068 29 H 0.273 0.727 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.421 0.579 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 -14.826 2.524 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.067 6.067 10 C 0.106 3.894 11 C -0.279 4.279 12 C 0.116 3.884 13 F -0.128 7.128 14 C -0.250 4.250 15 C -0.065 4.065 16 C -0.042 4.042 17 N -0.273 5.273 18 C 0.378 3.622 19 O -0.391 6.391 20 C -0.158 4.158 21 N -0.026 5.026 22 O 0.064 5.936 23 C -0.099 4.099 24 C -0.205 4.205 25 C 0.065 3.935 26 O -0.293 6.293 27 C -0.017 4.017 28 C -0.106 4.106 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.259 0.741 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.809 -14.076 2.321 16.767 hybrid contribution 0.565 0.932 -0.190 1.107 sum -8.244 -13.144 2.130 15.661 Atomic orbital electron populations 1.70037 1.05985 1.28091 1.44569 1.25340 0.95929 0.98978 0.96001 0.85593 0.79273 0.79894 0.78430 1.18872 1.19930 1.19949 1.21423 0.92044 0.80271 1.53204 0.88619 1.83949 1.34035 1.11436 1.77269 1.18793 0.89576 0.86899 0.94163 1.20871 0.93992 0.98512 1.14491 1.17461 0.76686 0.94219 1.00000 1.91420 1.31865 1.97348 1.92179 1.20427 0.95042 0.95761 1.13785 1.20445 0.92712 0.96729 0.96584 1.16784 0.82661 0.91440 1.13316 1.42933 1.06980 1.28519 1.48829 1.16779 0.84064 0.82114 0.79233 1.90769 1.57622 1.44390 1.46344 1.22778 0.95740 0.95914 1.01325 1.74805 0.89871 1.19371 1.18566 1.84682 1.25121 1.35472 1.48331 1.23995 0.97281 0.91645 0.97019 1.21319 0.92589 1.01972 1.04606 1.20991 0.88692 0.91060 0.92767 1.88135 1.20770 1.85734 1.34664 1.22738 0.87499 0.94000 0.97426 1.21045 0.94259 0.94617 1.00707 0.91705 0.83752 0.85698 0.84684 0.74110 0.85954 0.90375 0.86941 0.92067 0.87666 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 2 C 0.04 1.14 5.49 -17.51 -0.10 1.04 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.39 -10.49 9.44 30.88 0.29 -10.19 16 8 H 0.10 2.38 5.30 -52.49 -0.28 2.11 16 9 O -0.16 -4.39 9.31 0.05 0.00 -4.39 16 10 C 0.16 3.78 6.66 -38.92 -0.26 3.52 16 11 C -0.26 -5.60 9.11 -39.36 -0.36 -5.96 16 12 C 0.14 2.68 7.29 -39.42 -0.29 2.39 16 13 F -0.15 -2.81 17.26 2.25 0.04 -2.77 16 14 C -0.23 -4.16 10.02 -39.48 -0.40 -4.56 16 15 C -0.04 -0.84 8.65 -39.42 -0.34 -1.18 16 16 C 0.05 1.09 6.28 -83.48 -0.52 0.57 16 17 N -0.63 -12.48 5.19 -10.45 -0.05 -12.53 16 18 C 0.59 10.94 7.57 -12.13 -0.09 10.85 16 19 O -0.52 -9.90 14.05 5.35 0.08 -9.82 16 20 C 0.00 0.01 7.18 -82.90 -0.59 -0.58 16 21 N -0.32 -5.28 11.91 33.25 0.40 -4.88 16 22 O 0.14 1.85 11.17 20.05 0.22 2.08 16 23 C -0.03 -0.39 7.50 -35.23 -0.26 -0.65 16 24 C -0.20 -2.66 6.15 -104.92 -0.65 -3.31 16 25 C 0.14 1.63 6.67 35.69 0.24 1.86 16 26 O -0.37 -3.84 10.76 -35.23 -0.38 -4.22 16 27 C 0.06 0.39 6.77 37.49 0.25 0.64 16 28 C -0.07 -0.44 6.56 -27.56 -0.18 -0.62 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.14 3.13 5.71 -52.49 -0.30 2.83 16 31 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.14 2.38 6.48 -52.48 -0.34 2.04 16 33 H 0.42 8.52 8.34 -40.82 -0.34 8.18 16 34 H 0.12 1.52 8.00 -51.93 -0.42 1.10 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -30.98 346.40 -5.34 -36.32 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.34 Total: 9.36 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.26 Total: -6.18 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 1.10 Total: -40.42 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.08 Total: -16.35 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.98 -5.34 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857859125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.216 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds