Wall clock time and date at job start Wed Apr 1 2020 04:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48496 * 109.46874 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46814 * 299.99766 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99857 * 3 2 1 7 7 C 1.38642 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99952 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.35769 * 116.99740 * 174.51876 * 9 7 2 11 11 C 1.38745 * 120.08943 * 354.19499 * 10 9 7 12 12 C 1.38339 * 119.97665 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.91930 * 180.02562 * 12 11 10 14 14 C 1.38566 * 120.16377 * 0.02562 * 12 11 10 15 15 C 1.38173 * 120.17520 * 359.97438 * 14 12 11 16 16 C 1.38734 * 120.02248 * 0.24565 * 15 14 12 17 17 N 1.39983 * 120.08196 * 179.72723 * 16 15 14 18 18 C 1.34777 * 119.99820 * 34.08873 * 17 16 15 19 19 O 1.21513 * 119.99950 * 5.60511 * 18 17 16 20 20 C 1.48290 * 119.99747 * 185.60856 * 18 17 16 21 21 N 1.31614 * 127.15872 * 0.02562 * 20 18 17 22 22 O 1.21571 * 111.54019 * 179.97438 * 21 20 18 23 23 C 1.32812 * 111.52097 * 359.96375 * 22 21 20 24 24 C 1.35707 * 106.71049 * 359.80398 * 23 22 21 25 25 C 1.50043 * 123.86460 * 179.42651 * 24 23 22 26 26 O 1.43614 * 107.88275 * 345.87291 * 25 24 23 27 27 C 1.42995 * 114.38567 * 49.77505 * 26 25 24 28 28 C 1.50672 * 130.82317 * 180.18276 * 23 22 21 29 29 H 0.97001 * 119.99327 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.01025 * 0.02562 * 11 10 9 31 31 H 1.08000 * 119.91168 * 179.97438 * 14 12 11 32 32 H 1.08004 * 119.99175 * 179.97438 * 15 14 12 33 33 H 0.97000 * 120.00034 * 214.08180 * 17 16 15 34 34 H 1.09002 * 109.95379 * 226.15864 * 25 24 23 35 35 H 1.08998 * 109.60605 * 105.38871 * 25 24 23 36 36 H 1.08999 * 109.40626 * 169.44562 * 27 26 25 37 37 H 1.09003 * 109.33189 * 49.65989 * 27 26 25 38 38 H 1.08993 * 109.83002 * 283.58325 * 28 23 22 39 39 H 1.09007 * 109.82041 * 44.50765 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8911 2.3964 -1.2126 6 1 1.8911 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0695 -3.5041 -0.1145 11 6 3.4354 -3.4286 -0.3458 12 6 4.1818 -4.5875 -0.4621 13 9 5.5119 -4.5127 -0.6868 14 6 3.5687 -5.8249 -0.3486 15 6 2.2088 -5.9077 -0.1182 16 6 1.4523 -4.7503 -0.0049 17 7 0.0735 -4.8328 0.2228 18 6 -0.4262 -5.8312 0.9777 19 8 0.3257 -6.5996 1.5440 20 6 -1.8938 -5.9919 1.1172 21 7 -2.8307 -5.2469 0.5701 22 8 -3.9425 -5.6335 0.8739 23 6 -3.8886 -6.6959 1.6690 24 6 -2.5742 -6.9765 1.8567 25 6 -2.0736 -8.1051 2.7094 26 8 -3.1705 -8.5733 3.5095 27 6 -4.3677 -8.8372 2.7736 28 6 -4.9878 -7.5162 2.2928 29 1 -0.4849 0.8401 0.0004 30 1 3.9159 -2.4655 -0.4343 31 1 4.1553 -6.7271 -0.4405 32 1 1.7339 -6.8738 -0.0307 33 1 -0.5221 -4.1713 -0.1627 34 1 -1.2687 -7.7545 3.3554 35 1 -1.7107 -8.9116 2.0723 36 1 -5.0789 -9.3590 3.4139 37 1 -4.1313 -9.4610 1.9115 38 1 -5.4152 -6.9788 3.1392 39 1 -5.7627 -7.7191 1.5534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857859125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:34 Heat of formation + Delta-G solvation = -72.342848 kcal Electronic energy + Delta-G solvation = -29825.705318 eV Core-core repulsion = 25230.876361 eV Total energy + Delta-G solvation = -4594.828957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.100 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.89443 -46.39940 -41.79337 -40.36746 -39.86272 -38.15134 -35.88446 -35.28218 -34.39285 -34.24703 -31.74400 -31.22281 -30.19506 -27.76666 -27.47623 -25.98097 -24.98513 -24.07923 -23.18317 -22.29384 -21.11799 -20.23962 -19.76339 -19.20248 -18.97812 -18.21223 -18.17778 -17.23643 -17.14897 -17.01929 -16.65588 -16.50377 -16.14282 -15.97073 -15.88122 -15.84604 -15.52105 -15.32291 -14.97908 -14.63911 -14.51093 -14.10579 -13.90165 -13.80430 -13.48580 -13.16957 -12.86176 -12.73323 -12.68106 -12.42453 -12.15398 -12.04107 -11.79449 -11.61423 -11.59366 -11.23494 -10.91403 -10.89997 -10.31867 -9.67365 -8.92342 -8.57193 -6.24977 -0.29875 0.15724 0.36946 0.44318 1.33030 1.39752 1.50395 1.55527 1.76611 1.82454 2.09193 2.54785 2.57568 2.78457 2.98344 3.07808 3.32905 3.36904 3.49099 3.66561 3.84070 3.94315 4.09571 4.13533 4.21334 4.23776 4.36160 4.44089 4.46030 4.68607 4.78958 4.81404 4.91169 4.92960 5.00455 5.13433 5.17995 5.24497 5.33060 5.85552 5.89667 6.02040 6.09443 6.64660 6.83840 6.86663 7.53929 8.63647 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.003200 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.215146 B = 8748.552226 C =10908.044257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.011 4.011 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.417 4.417 8 H 0.103 0.897 9 O -0.206 6.206 10 C 0.135 3.865 11 C -0.263 4.263 12 C 0.133 3.867 13 F -0.141 7.141 14 C -0.200 4.200 15 C -0.043 4.043 16 C 0.049 3.951 17 N -0.637 5.637 18 C 0.596 3.404 19 O -0.525 6.525 20 C -0.025 4.025 21 N -0.355 5.355 22 O 0.146 5.854 23 C -0.016 4.016 24 C -0.214 4.214 25 C 0.147 3.853 26 O -0.388 6.388 27 C 0.052 3.948 28 C -0.065 4.065 29 H 0.275 0.725 30 H 0.139 0.861 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.416 0.584 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -17.134 2.933 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.211 4.211 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.493 4.493 8 H 0.120 0.880 9 O -0.111 6.111 10 C 0.081 3.919 11 C -0.284 4.284 12 C 0.113 3.887 13 F -0.119 7.119 14 C -0.219 4.219 15 C -0.063 4.063 16 C -0.045 4.045 17 N -0.281 5.281 18 C 0.382 3.618 19 O -0.401 6.401 20 C -0.181 4.181 21 N -0.055 5.055 22 O 0.071 5.929 23 C -0.082 4.082 24 C -0.220 4.220 25 C 0.070 3.930 26 O -0.307 6.307 27 C -0.024 4.024 28 C -0.103 4.103 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.252 0.748 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.165 0.835 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.133 -16.438 2.727 19.002 hybrid contribution 0.642 1.303 -0.295 1.482 sum -8.491 -15.136 2.432 17.524 Atomic orbital electron populations 1.70162 1.07791 1.29072 1.47245 1.26509 0.96834 1.02439 0.95323 0.84560 0.78287 0.74947 0.78670 1.17663 1.19108 1.19377 1.21836 0.92601 0.80943 1.53877 0.87993 1.83930 1.35024 1.12146 1.79982 1.19193 0.90366 0.87007 0.95340 1.20945 0.93691 0.99333 1.14388 1.17454 0.77008 0.94070 1.00186 1.91445 1.31090 1.97317 1.92070 1.20875 0.94747 0.96526 1.09780 1.20715 0.93067 0.96582 0.95946 1.17134 0.83514 0.91460 1.12413 1.43039 1.06557 1.28992 1.49524 1.17043 0.85192 0.81210 0.78319 1.90734 1.58331 1.44556 1.46494 1.22630 0.94602 0.97642 1.03234 1.74800 0.90669 1.20337 1.19743 1.84645 1.23923 1.36067 1.48310 1.24926 0.98183 0.90162 0.94913 1.21594 0.93233 1.02223 1.04957 1.20876 0.89044 0.90731 0.92317 1.88122 1.21647 1.85580 1.35314 1.23135 0.86598 0.94202 0.98471 1.21430 0.93403 0.93740 1.01727 0.91541 0.84383 0.81651 0.82910 0.74761 0.87658 0.89294 0.83530 0.91014 0.86030 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.11 13.67 21.61 0.30 -52.81 16 2 C -0.01 -0.62 5.49 84.83 0.47 -0.16 16 3 Si 1.02 41.73 29.55 68.60 2.03 43.75 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.42 -23.30 9.44 67.92 0.64 -22.66 16 8 H 0.10 5.30 5.30 -2.91 -0.02 5.29 16 9 O -0.21 -11.65 9.31 -22.75 -0.21 -11.86 16 10 C 0.13 6.52 6.66 22.70 0.15 6.67 16 11 C -0.26 -11.59 9.11 22.42 0.20 -11.39 16 12 C 0.13 5.02 7.29 22.37 0.16 5.19 16 13 F -0.14 -4.98 17.26 44.97 0.78 -4.20 16 14 C -0.20 -6.67 10.02 22.33 0.22 -6.45 16 15 C -0.04 -1.57 8.65 22.37 0.19 -1.37 16 16 C 0.05 2.10 6.28 38.26 0.24 2.34 16 17 N -0.64 -26.45 5.19 -305.25 -1.58 -28.03 16 18 C 0.60 22.59 7.57 86.92 0.66 23.25 16 19 O -0.53 -20.24 14.05 -3.76 -0.05 -20.30 16 20 C -0.02 -0.83 7.18 42.45 0.30 -0.52 16 21 N -0.35 -11.86 11.91 -48.99 -0.58 -12.44 16 22 O 0.15 3.86 11.17 81.73 0.91 4.77 16 23 C -0.02 -0.34 7.50 25.09 0.19 -0.15 16 24 C -0.21 -5.59 6.15 -20.06 -0.12 -5.71 16 25 C 0.15 3.25 6.67 71.03 0.47 3.73 16 26 O -0.39 -7.09 10.76 -148.98 -1.60 -8.70 16 27 C 0.05 0.47 6.77 72.20 0.49 0.96 16 28 C -0.07 -0.60 6.56 30.06 0.20 -0.40 16 29 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.14 6.17 5.71 -2.91 -0.02 6.15 16 31 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 32 H 0.15 5.07 6.48 -2.91 -0.02 5.06 16 33 H 0.42 18.09 8.34 -92.71 -0.77 17.32 16 34 H 0.11 2.64 8.00 -2.39 -0.02 2.62 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.14 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -71.60 346.40 4.83 -66.77 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.39 Total: 29.72 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 4.47 Total: -6.68 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -1.87 Total: -93.28 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.96 Total: -36.08 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -71.60 4.83 -66.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857859125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.574 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds