Wall clock time and date at job start Wed Apr 1 2020 05:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86799 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47121 * 239.99886 * 3 2 1 5 5 H 1.48501 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46975 * 120.00029 * 3 2 1 7 7 C 1.40308 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00259 * 170.64625 * 7 2 1 9 9 C 1.40545 * 119.99934 * 350.36581 * 7 2 1 10 10 C 1.44183 * 123.71205 * 335.60357 * 9 7 2 11 11 C 1.32767 * 114.43085 * 180.02562 * 10 9 7 12 12 S 1.75474 * 111.35971 * 359.97438 * 11 10 9 13 13 C 1.39546 * 123.71586 * 155.31102 * 9 7 2 14 14 C 1.46236 * 125.22587 * 359.95888 * 13 9 7 15 15 O 1.21760 * 120.00299 * 0.02562 * 14 13 9 16 16 N 1.34776 * 119.99928 * 180.02562 * 14 13 9 17 17 C 1.47424 * 125.65061 * 179.72008 * 16 14 13 18 18 C 1.55123 * 104.72512 * 155.81439 * 17 16 14 19 19 H 1.08999 * 110.90688 * 155.27343 * 18 17 16 20 20 C 1.52997 * 111.22517 * 279.17568 * 18 17 16 21 21 N 1.46898 * 109.47461 * 291.08100 * 20 18 17 22 22 C 1.55157 * 101.48585 * 37.29383 * 18 17 16 23 23 H 1.08997 * 110.72030 * 82.69718 * 22 18 17 24 24 C 1.53000 * 110.87150 * 205.89689 * 22 18 17 25 25 F 1.39904 * 109.47129 * 180.21341 * 24 22 18 26 26 F 1.39898 * 109.47457 * 300.21118 * 24 22 18 27 27 F 1.39896 * 109.47102 * 60.21667 * 24 22 18 28 28 C 1.47025 * 125.64643 * 0.02562 * 16 14 13 29 29 H 0.97002 * 120.00565 * 359.97438 * 1 2 3 30 30 H 1.08002 * 122.79107 * 359.97438 * 10 9 7 31 31 H 1.07999 * 124.32325 * 179.97438 * 11 10 9 32 32 H 1.09000 * 110.36336 * 274.74639 * 17 16 14 33 33 H 1.09003 * 110.36731 * 37.06461 * 17 16 14 34 34 H 1.08994 * 109.47509 * 51.08494 * 20 18 17 35 35 H 1.09005 * 109.47392 * 171.08600 * 20 18 17 36 36 H 1.00897 * 111.00559 * 179.97438 * 21 20 18 37 37 H 1.00898 * 111.00161 * 303.95913 * 21 20 18 38 38 H 1.08992 * 109.88344 * 300.44121 * 28 16 14 39 39 H 1.09001 * 109.88311 * 61.45486 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0079 -1.2151 -0.0005 8 1 3.0772 -1.2213 -0.1526 9 6 1.3200 -2.4238 0.2026 10 6 0.0609 -2.5208 0.8984 11 6 -0.4252 -3.7532 0.9847 12 16 0.6360 -4.9148 0.2077 13 6 1.7776 -3.6612 -0.2519 14 6 3.0180 -3.8810 -0.9946 15 8 3.7429 -2.9397 -1.2612 16 7 3.3587 -5.1254 -1.3842 17 6 4.5715 -5.4873 -2.1402 18 6 4.8187 -6.9800 -1.7981 19 1 5.3875 -7.4710 -2.5878 20 6 5.5202 -7.1298 -0.4468 21 7 6.8967 -6.6275 -0.5512 22 6 3.3680 -7.5269 -1.7353 23 1 3.0018 -7.7642 -2.7341 24 6 3.2871 -8.7542 -0.8255 25 9 1.9702 -9.2254 -0.7939 26 9 4.1292 -9.7567 -1.3185 27 9 3.6878 -8.4030 0.4681 28 6 2.5793 -6.3461 -1.1309 29 1 -0.4851 0.8400 0.0004 30 1 -0.4445 -1.6623 1.3155 31 1 -1.3552 -4.0084 1.4710 32 1 4.4026 -5.3637 -3.2099 33 1 5.4162 -4.8793 -1.8160 34 1 4.9809 -6.5575 0.3080 35 1 5.5380 -8.1816 -0.1612 36 1 7.3814 -6.7151 0.3294 37 1 7.3985 -7.0985 -1.2890 38 1 2.4577 -6.4923 -0.0577 39 1 1.6021 -6.2675 -1.6073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877353670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:26 Heat of formation + Delta-G solvation = -156.172019 kcal Electronic energy + Delta-G solvation = -29542.486623 eV Core-core repulsion = 24968.378996 eV Total energy + Delta-G solvation = -4574.107627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.28894 -47.73375 -47.69472 -39.56582 -37.27555 -35.80057 -34.24301 -33.05195 -31.69688 -29.69494 -28.66098 -26.45498 -25.58095 -24.69818 -22.64001 -21.68503 -20.50353 -19.67169 -18.72263 -18.61126 -18.36062 -17.41711 -16.92346 -16.15779 -15.82300 -15.55225 -15.24488 -15.15516 -14.53774 -14.47128 -14.33627 -14.08588 -13.88196 -13.82322 -13.68401 -13.57558 -13.30275 -13.01434 -12.56136 -12.40851 -12.28886 -12.07662 -11.80056 -11.56681 -11.49416 -11.38772 -11.17972 -11.02970 -11.00838 -10.75080 -10.36633 -10.12844 -9.58200 -9.19640 -8.70203 -8.49041 -7.97359 -7.48352 -7.11664 -7.04087 -4.52781 2.17031 2.59649 2.99175 3.01113 3.04821 3.13546 3.52917 3.60672 3.69493 3.79227 3.85521 3.87681 3.92614 4.30696 4.38451 4.55621 4.68468 4.91572 5.03831 5.13378 5.24794 5.31888 5.56903 5.80101 5.87555 5.92217 6.02711 6.11200 6.14579 6.44425 6.82668 7.00554 7.05245 7.17618 7.24729 7.35097 7.49375 7.71779 8.30341 8.40989 8.59444 8.74311 9.51619 9.86980 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.003768 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.903316 B = 7429.813288 C = 8645.950710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.068 3.932 3 Si 0.925 3.075 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.376 4.376 8 H 0.110 0.890 9 C 0.143 3.857 10 C -0.099 4.099 11 C -0.218 4.218 12 S -0.040 6.040 13 C -0.429 4.429 14 C 0.619 3.381 15 O -0.554 6.554 16 N -0.631 5.631 17 C 0.126 3.874 18 C -0.092 4.092 19 H 0.097 0.903 20 C 0.059 3.941 21 N -0.845 5.845 22 C -0.147 4.147 23 H 0.129 0.871 24 C 0.462 3.538 25 F -0.179 7.179 26 F -0.184 7.184 27 F -0.175 7.175 28 C 0.111 3.889 29 H 0.288 0.712 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.344 0.656 37 H 0.336 0.664 38 H 0.083 0.917 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -13.500 -1.711 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.407 4.407 8 H 0.128 0.872 9 C 0.132 3.868 10 C -0.131 4.131 11 C -0.352 4.352 12 S 0.215 5.785 13 C -0.547 4.547 14 C 0.419 3.581 15 O -0.436 6.436 16 N -0.368 5.368 17 C 0.003 3.997 18 C -0.111 4.111 19 H 0.115 0.885 20 C -0.071 4.071 21 N -0.374 5.374 22 C -0.168 4.168 23 H 0.147 0.853 24 C 0.408 3.592 25 F -0.161 7.161 26 F -0.166 7.166 27 F -0.156 7.156 28 C -0.014 4.014 29 H 0.100 0.900 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.101 0.899 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.015 -13.584 -2.146 14.638 hybrid contribution 0.191 0.748 0.559 0.953 sum 5.207 -12.836 -1.587 13.942 Atomic orbital electron populations 1.69665 1.08073 1.30479 1.31955 1.26367 0.94938 1.02547 0.91545 0.86053 0.79956 0.78350 0.80785 1.18206 1.20133 1.18343 1.19981 0.97603 0.88814 1.34316 0.87213 1.17899 0.89531 0.91736 0.87666 1.21672 0.96330 0.95994 0.99060 1.25184 1.03695 0.97769 1.08502 1.82944 1.18508 1.13501 1.63533 1.22516 1.05747 0.95830 1.30654 1.16506 0.84514 0.79361 0.77710 1.90685 1.53702 1.39965 1.59250 1.48146 1.23027 1.06048 1.59595 1.22009 0.89789 0.92378 0.95521 1.22472 0.92014 0.97574 0.99084 0.88526 1.22191 0.90211 0.98032 0.96671 1.58554 1.03324 1.64692 1.10849 1.23640 1.00614 0.92272 1.00269 0.85324 1.20309 0.73561 0.85072 0.80288 1.93210 1.36376 1.89929 1.96545 1.93165 1.71752 1.64048 1.87587 1.93181 1.90103 1.91676 1.40633 1.21755 0.94898 0.83192 1.01568 0.90039 0.84049 0.84747 0.92325 0.88642 0.89516 0.94691 0.84277 0.85158 0.89937 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.80 10.86 55.57 0.60 -18.20 16 2 C 0.07 1.65 5.39 -17.28 -0.09 1.56 16 3 Si 0.93 18.57 29.57 -169.99 -5.03 13.54 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 7 C -0.38 -10.14 8.48 -37.93 -0.32 -10.46 16 8 H 0.11 3.10 6.10 -52.48 -0.32 2.78 16 9 C 0.14 3.81 5.67 -106.21 -0.60 3.21 16 10 C -0.10 -2.40 9.04 -39.12 -0.35 -2.75 16 11 C -0.22 -4.75 11.07 28.86 0.32 -4.43 16 12 S -0.04 -0.85 18.49 -107.50 -1.99 -2.84 16 13 C -0.43 -10.81 6.44 -35.88 -0.23 -11.04 16 14 C 0.62 15.19 7.80 -13.05 -0.10 15.09 16 15 O -0.55 -15.22 14.73 5.13 0.08 -15.15 16 16 N -0.63 -12.10 3.30 -172.08 -0.57 -12.67 16 17 C 0.13 1.97 6.36 -2.41 -0.02 1.95 16 18 C -0.09 -1.08 2.90 -88.36 -0.26 -1.33 16 19 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.06 0.72 4.64 -3.83 -0.02 0.70 16 21 N -0.84 -9.15 9.22 -10.37 -0.10 -9.25 16 22 C -0.15 -1.74 2.89 -88.78 -0.26 -2.00 16 23 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 24 C 0.46 5.47 2.35 37.16 0.09 5.56 16 25 F -0.18 -2.24 17.22 2.25 0.04 -2.21 16 26 F -0.18 -2.03 16.52 2.25 0.04 -1.99 16 27 F -0.17 -2.28 12.67 2.25 0.03 -2.25 16 28 C 0.11 1.78 4.29 -3.06 -0.01 1.77 16 29 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 30 H 0.14 3.43 6.46 -52.49 -0.34 3.09 16 31 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.68 7.62 -51.93 -0.40 1.28 16 34 H 0.09 1.32 7.39 -51.93 -0.38 0.93 16 35 H 0.04 0.39 5.64 -51.93 -0.29 0.10 16 36 H 0.34 3.28 9.08 -39.29 -0.36 2.92 16 37 H 0.34 2.89 8.99 -39.29 -0.35 2.54 16 38 H 0.08 1.41 5.78 -51.93 -0.30 1.11 16 39 H 0.09 1.41 6.96 -51.93 -0.36 1.04 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -29.47 336.00 -7.62 -37.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.93 Total: 11.06 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.86 Total: -2.19 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.06 Total: -40.12 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.15 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.10 Total: -6.45 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -1.99 Total: -2.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.47 -7.62 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877353670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.086 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds