Wall clock time and date at job start Wed Apr 1 2020 04:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48496 * 109.47137 * 270.00268 * 3 2 1 5 5 H 1.48503 * 109.47053 * 30.00242 * 3 2 1 6 6 H 1.48498 * 109.46881 * 150.00025 * 3 2 1 7 7 C 1.38800 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00464 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00187 * 180.27561 * 7 2 1 10 10 C 1.76198 * 100.00209 * 174.86182 * 9 7 2 11 11 C 1.39115 * 120.18934 * 7.46068 * 10 9 7 12 12 C 1.37914 * 120.04554 * 179.75033 * 11 10 9 13 13 C 1.38657 * 120.44117 * 0.55374 * 12 11 10 14 14 C 1.37802 * 120.38232 * 359.70282 * 13 12 11 15 15 C 1.39683 * 119.93600 * 0.02562 * 14 13 12 16 16 C 1.47427 * 120.21312 * 180.02562 * 15 14 13 17 17 O 1.21615 * 120.00227 * 213.89034 * 16 15 14 18 18 N 1.34777 * 120.00085 * 33.89557 * 16 15 14 19 19 C 1.47210 * 135.98478 * 354.58447 * 18 16 15 20 20 C 1.53018 * 87.70437 * 153.54897 * 19 18 16 21 21 C 1.47197 * 135.98581 * 174.95376 * 18 16 15 22 22 C 1.52783 * 114.55250 * 271.80090 * 20 19 18 23 23 C 1.53279 * 108.22397 * 169.91262 * 22 20 19 24 24 N 1.45898 * 110.18178 * 45.65941 * 23 22 20 25 25 C 1.33566 * 123.97718 * 338.55314 * 24 23 22 26 26 O 1.21514 * 118.47753 * 184.02725 * 25 24 23 27 27 O 1.34521 * 123.05116 * 4.02485 * 25 24 23 28 28 H 0.97001 * 119.99688 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.97342 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.77928 * 180.28088 * 12 11 10 31 31 H 1.07994 * 119.80714 * 179.72348 * 13 12 11 32 32 H 1.07997 * 120.03649 * 179.97438 * 14 13 12 33 33 H 1.09006 * 113.49321 * 268.23589 * 19 18 16 34 34 H 1.09003 * 113.49129 * 38.75408 * 19 18 16 35 35 H 1.09003 * 113.49703 * 321.22829 * 21 18 16 36 36 H 1.09000 * 113.49860 * 91.70110 * 21 18 16 37 37 H 1.09002 * 109.71240 * 289.59474 * 22 20 19 38 38 H 1.08997 * 109.71699 * 50.23335 * 22 20 19 39 39 H 1.09002 * 109.35340 * 165.87927 * 23 22 20 40 40 H 1.08994 * 109.35431 * 285.58392 * 23 22 20 41 41 H 0.96999 * 118.01085 * 158.57640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5471 1.4400 0.7000 7 6 2.0095 -1.2021 -0.0005 8 1 1.4695 -2.1375 -0.0005 9 16 3.7715 -1.2022 0.0068 10 6 4.0767 -2.9309 0.1585 11 6 3.0243 -3.8370 0.0763 12 6 3.2673 -5.1898 0.1903 13 6 4.5561 -5.6569 0.3987 14 6 5.6111 -4.7750 0.4882 15 6 5.3839 -3.4019 0.3694 16 6 6.5082 -2.4530 0.4637 17 8 6.3392 -1.3577 0.9646 18 7 7.7234 -2.7992 -0.0053 19 6 8.3344 -4.0150 -0.5669 20 6 9.3116 -3.1047 -1.3139 21 6 9.0231 -2.1292 -0.1744 22 6 8.8217 -2.6350 -2.6827 23 6 9.7770 -1.5471 -3.1863 24 7 11.1616 -1.9604 -2.9846 25 6 11.5429 -2.8870 -2.1014 26 8 12.7310 -3.1015 -1.9633 27 8 10.6729 -3.5937 -1.3577 28 1 -0.4850 0.8401 -0.0004 29 1 2.0169 -3.4810 -0.0814 30 1 2.4476 -5.8897 0.1213 31 1 4.7341 -6.7181 0.4909 32 1 6.6126 -5.1450 0.6510 33 1 8.8139 -4.6460 0.1816 34 1 7.6675 -4.5724 -1.2248 35 1 8.9385 -1.0926 -0.5007 36 1 9.6884 -2.2493 0.6807 37 1 8.8188 -3.4731 -3.3797 38 1 7.8149 -2.2272 -2.5929 39 1 9.6020 -1.3763 -4.2485 40 1 9.5943 -0.6235 -2.6372 41 1 11.8468 -1.5362 -3.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888403953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:56 Heat of formation + Delta-G solvation = -28.270002 kcal Electronic energy + Delta-G solvation = -28006.020875 eV Core-core repulsion = 23979.316236 eV Total energy + Delta-G solvation = -4026.704639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.94294 -40.12292 -38.67082 -37.46357 -36.37963 -36.00996 -32.81141 -31.71874 -30.80572 -30.54683 -28.45523 -26.66286 -26.02659 -24.95837 -23.79852 -22.47324 -22.18695 -20.03376 -19.32536 -18.54033 -18.05917 -17.74261 -17.04313 -16.74752 -16.30164 -16.02750 -15.81509 -15.30701 -15.03361 -14.85664 -14.52877 -14.42979 -14.06481 -13.86639 -13.54498 -13.33888 -13.22152 -12.78656 -12.64434 -12.30700 -12.30584 -12.02297 -11.96671 -11.79529 -11.39909 -11.26783 -11.04771 -10.90953 -10.64944 -10.52814 -9.89363 -9.82460 -9.69268 -9.57133 -8.97987 -8.94681 -8.60221 -8.53621 -6.90531 -6.56373 -4.30147 1.31438 1.79140 2.09895 2.45088 2.61782 2.75583 2.98630 3.10767 3.16414 3.29730 3.35386 3.55816 3.88343 4.06157 4.07533 4.19736 4.40052 4.47720 4.57623 4.72264 4.86031 4.93204 5.02680 5.07253 5.11966 5.15024 5.23057 5.33957 5.40807 5.41557 5.51103 5.72070 5.81851 5.95132 6.12921 6.35270 6.38234 6.64963 6.83163 6.94246 7.25100 7.32367 7.57275 7.66596 7.74999 8.24604 8.31407 8.85989 10.50424 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.003297 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.111917 B = 8491.252272 C = 9889.083259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.104 3.896 3 Si 0.845 3.155 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.230 1.230 7 C -0.561 4.561 8 H 0.109 0.891 9 S 0.035 5.965 10 C -0.021 4.021 11 C -0.144 4.144 12 C -0.075 4.075 13 C -0.173 4.173 14 C -0.068 4.068 15 C -0.163 4.163 16 C 0.599 3.401 17 O -0.501 6.501 18 N -0.641 5.641 19 C 0.120 3.880 20 C 0.066 3.934 21 C 0.094 3.906 22 C -0.140 4.140 23 C 0.103 3.897 24 N -0.730 5.730 25 C 0.659 3.341 26 O -0.536 6.536 27 O -0.317 6.317 28 H 0.276 0.724 29 H 0.148 0.852 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.373 -7.300 -6.757 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.107 4.107 3 Si 0.669 3.331 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.154 1.154 7 C -0.707 4.707 8 H 0.127 0.873 9 S 0.295 5.705 10 C -0.140 4.140 11 C -0.169 4.169 12 C -0.096 4.096 13 C -0.197 4.197 14 C -0.088 4.088 15 C -0.176 4.176 16 C 0.391 3.609 17 O -0.375 6.375 18 N -0.382 5.382 19 C -0.004 4.004 20 C 0.027 3.973 21 C -0.029 4.029 22 C -0.177 4.177 23 C -0.021 4.021 24 N -0.397 5.397 25 C 0.411 3.589 26 O -0.421 6.421 27 O -0.227 6.227 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 16.901 -5.663 -6.099 18.839 hybrid contribution -0.647 -0.126 -0.166 0.680 sum 16.254 -5.788 -6.265 18.356 Atomic orbital electron populations 1.69887 1.06042 1.28389 1.45123 1.24776 0.94562 0.98995 0.92406 0.86928 0.82466 0.83457 0.80257 1.18879 1.19156 1.15413 1.23119 0.89633 0.98454 1.59497 0.87325 1.83594 1.08089 0.97823 1.81035 1.22347 0.93693 1.00836 0.97089 1.21570 1.00087 0.92424 1.02789 1.21173 0.96533 0.95288 0.96599 1.20757 0.92902 0.98821 1.07182 1.20997 0.98566 0.91483 0.97768 1.18995 0.91534 0.92946 1.14134 1.17873 0.79687 0.86895 0.76464 1.90867 1.81667 1.22675 1.42242 1.49224 1.08556 1.14857 1.65533 1.23025 0.91559 0.89687 0.96109 1.23646 0.79625 0.97908 0.96086 1.23331 0.84539 0.98508 0.96517 1.22092 1.01405 1.00196 0.94042 1.21579 0.79841 0.97639 1.03006 1.45222 1.10564 1.42274 1.41649 1.17863 0.84851 0.78101 0.78056 1.91056 1.12487 1.68689 1.69916 1.86765 1.19999 1.50827 1.65145 0.91380 0.83498 0.86429 0.86568 0.86608 0.88079 0.88273 0.89313 0.88659 0.88695 0.86724 0.88734 0.90497 0.74388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.36 13.96 55.49 0.77 -23.59 16 2 C 0.10 2.84 5.50 -17.46 -0.10 2.75 16 3 Si 0.85 20.07 27.74 -169.99 -4.72 15.36 16 4 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.23 -5.52 6.73 56.52 0.38 -5.14 16 7 C -0.56 -15.12 9.62 30.94 0.30 -14.82 16 8 H 0.11 3.01 5.07 -52.48 -0.27 2.74 16 9 S 0.04 0.85 17.13 -107.50 -1.84 -0.99 16 10 C -0.02 -0.45 6.13 -38.39 -0.24 -0.68 16 11 C -0.14 -2.80 9.25 -39.37 -0.36 -3.17 16 12 C -0.07 -1.16 10.03 -39.55 -0.40 -1.56 16 13 C -0.17 -2.36 10.02 -39.59 -0.40 -2.76 16 14 C -0.07 -0.96 8.69 -39.20 -0.34 -1.30 16 15 C -0.16 -2.88 5.80 -104.75 -0.61 -3.49 16 16 C 0.60 10.43 7.47 -12.52 -0.09 10.33 16 17 O -0.50 -10.72 15.59 5.26 0.08 -10.64 16 18 N -0.64 -8.07 3.48 -186.40 -0.65 -8.72 16 19 C 0.12 1.07 5.80 -7.99 -0.05 1.02 16 20 C 0.07 0.57 1.38 -90.85 -0.13 0.45 16 21 C 0.09 0.97 7.96 -8.13 -0.06 0.91 16 22 C -0.14 -0.93 5.47 -26.70 -0.15 -1.08 16 23 C 0.10 0.55 7.09 -4.22 -0.03 0.52 16 24 N -0.73 -5.20 5.46 -65.91 -0.36 -5.56 16 25 C 0.66 7.29 8.60 53.52 0.46 7.75 16 26 O -0.54 -7.99 17.94 -19.39 -0.35 -8.34 16 27 O -0.32 -3.37 10.31 -40.10 -0.41 -3.79 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.15 3.14 4.97 -52.49 -0.26 2.88 16 30 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.28 6.26 -52.49 -0.33 0.95 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.77 7.58 -51.93 -0.39 0.38 16 35 H 0.09 0.90 7.62 -51.93 -0.40 0.50 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.86 7.99 -51.93 -0.41 0.45 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.40 7.72 -51.93 -0.40 0.00 16 41 H 0.42 2.28 8.81 -40.82 -0.36 1.92 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -34.32 354.40 -8.83 -43.15 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.51 Total: 2.91 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.19 Total: -5.13 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.23 Total: -37.86 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.68 Total: -22.77 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.72 Total: 15.36 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -1.84 Total: -0.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.32 -8.83 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888403953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.878 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds