Wall clock time and date at job start Wed Apr 1 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31781 * 122.75046 * 2 1 4 4 C 1.29024 * 117.12463 * 180.02562 * 3 2 1 5 5 C 1.50703 * 124.91718 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47283 * 89.99806 * 5 4 3 7 7 F 1.39901 * 109.47346 * 59.99956 * 6 5 4 8 8 F 1.39897 * 109.47293 * 180.02562 * 6 5 4 9 9 F 1.39906 * 109.47090 * 300.00255 * 6 5 4 10 10 S 1.70978 * 110.16811 * 359.97438 * 4 3 2 11 11 C 1.33642 * 122.74773 * 180.02562 * 2 1 3 12 12 C 1.50694 * 126.04067 * 359.97438 * 11 2 1 13 13 C 1.50704 * 109.47070 * 90.02112 * 12 11 2 14 14 O 1.21279 * 119.99917 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00077 * 180.02562 * 13 12 11 16 16 C 1.47069 * 136.05508 * 359.62475 * 15 13 12 17 17 C 1.53757 * 87.88709 * 152.96739 * 16 15 13 18 18 C 1.50698 * 114.26692 * 139.78812 * 17 16 15 19 19 H 1.08006 * 120.00347 * 266.47759 * 18 17 16 20 20 C 1.37880 * 120.00059 * 86.47546 * 18 17 16 21 21 N 1.31514 * 119.99649 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00434 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46619 * 60.00432 * 22 20 18 24 24 H 1.48498 * 109.46935 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47056 * 300.00406 * 22 20 18 26 26 C 1.47065 * 136.05761 * 180.02562 * 15 13 12 27 27 H 1.09005 * 109.46669 * 89.98268 * 1 2 3 28 28 H 1.08995 * 109.47261 * 209.97546 * 1 2 3 29 29 H 1.08995 * 109.47177 * 329.98103 * 1 2 3 30 30 H 1.08999 * 109.47211 * 210.00008 * 5 4 3 31 31 H 1.09003 * 109.46718 * 329.99649 * 5 4 3 32 32 H 1.09001 * 109.47487 * 210.02236 * 12 11 2 33 33 H 1.09003 * 109.47207 * 330.02413 * 12 11 2 34 34 H 1.09001 * 113.46603 * 267.69757 * 16 15 13 35 35 H 1.09000 * 113.46935 * 38.13751 * 16 15 13 36 36 H 1.08994 * 114.39920 * 272.67476 * 17 16 15 37 37 H 0.96999 * 119.99953 * 179.97438 * 21 20 18 38 38 H 1.09002 * 113.46760 * 321.85628 * 26 15 13 39 39 H 1.08998 * 113.47017 * 92.24569 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 6 4.4836 2.1271 -0.0012 6 6 4.8157 2.5150 1.4410 7 9 5.3809 1.4183 2.1006 8 9 5.7246 3.5784 1.4404 9 9 3.6447 2.9032 2.1010 10 16 3.9333 -0.6732 -0.0004 11 6 2.2300 -1.1240 -0.0005 12 6 1.6847 -2.5289 -0.0006 13 6 1.5029 -2.9971 -1.4215 14 8 1.7885 -2.2624 -2.3432 15 7 1.0230 -4.2322 -1.6679 16 6 0.5845 -5.3788 -0.8580 17 6 -0.3287 -5.7826 -2.0273 18 6 -0.3779 -7.2655 -2.2911 19 1 0.2870 -7.7070 -3.0188 20 6 -1.2719 -8.0588 -1.6035 21 7 -2.0819 -7.5211 -0.7178 22 14 -1.3335 -9.8968 -1.9310 23 1 -0.0108 -10.4987 -1.6250 24 1 -2.3718 -10.5184 -1.0703 25 1 -1.6672 -10.1344 -3.3583 26 6 0.7140 -5.0289 -2.8648 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5141 30 1 5.3959 1.8246 -0.5153 31 1 4.0432 2.9815 -0.5151 32 1 2.3829 -3.1897 0.5132 33 1 0.7236 -2.5456 0.5132 34 1 1.3786 -6.0985 -0.6589 35 1 0.0396 -5.0920 0.0413 36 1 -1.3130 -5.3149 -2.0121 37 1 -2.7110 -8.0791 -0.2344 38 1 0.2793 -4.4439 -3.6753 39 1 1.5424 -5.6557 -3.1948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898674434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:21 Heat of formation + Delta-G solvation = -132.784908 kcal Electronic energy + Delta-G solvation = -27465.119113 eV Core-core repulsion = 22892.025627 eV Total energy + Delta-G solvation = -4573.093486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.15833 -48.66983 -48.63506 -41.42944 -40.81381 -38.79830 -35.33710 -34.63477 -32.89848 -31.23825 -30.36805 -27.58263 -26.70522 -26.32592 -25.58857 -23.40620 -22.31447 -20.45294 -19.76768 -19.66702 -19.31385 -19.12791 -18.74072 -18.41162 -17.88677 -16.91240 -16.59085 -16.29210 -15.98577 -15.72106 -15.56755 -15.44770 -15.18636 -15.06754 -14.80526 -14.77887 -14.60214 -14.42645 -14.17241 -13.87890 -13.77654 -13.72835 -13.49431 -13.24688 -13.11625 -12.93910 -12.87201 -12.73267 -12.60469 -12.19727 -12.16347 -11.45016 -11.03666 -10.87490 -10.81037 -10.52175 -10.30160 -9.74170 -9.56350 -8.15209 -6.25664 -0.56551 0.17221 0.57433 1.41915 1.49950 1.51416 1.57505 1.59111 1.82632 2.05657 2.47752 2.52466 2.76640 2.98471 3.15359 3.23619 3.50787 3.63678 3.77054 3.92416 4.10375 4.27788 4.30953 4.35127 4.42774 4.44111 4.56202 4.68698 4.71040 4.73190 4.86706 4.87398 4.98187 5.08000 5.23231 5.62150 5.83680 6.25294 6.55811 6.82600 6.89384 7.12522 7.44268 8.94303 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.002047 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.872427 B =13672.394238 C =13784.066391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.060 3.940 3 N -0.465 5.465 4 C 0.009 3.991 5 C -0.081 4.081 6 C 0.461 3.539 7 F -0.185 7.185 8 F -0.175 7.175 9 F -0.187 7.187 10 S 0.184 5.816 11 C -0.207 4.207 12 C -0.053 4.053 13 C 0.533 3.467 14 O -0.587 6.587 15 N -0.643 5.643 16 C 0.112 3.888 17 C 0.023 3.977 18 C -0.528 4.528 19 H 0.065 0.935 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.955 3.045 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.274 1.274 26 C 0.105 3.895 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.053 0.947 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.395 16.775 5.860 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 N -0.180 5.180 4 C -0.268 4.268 5 C -0.122 4.122 6 C 0.405 3.595 7 F -0.167 7.167 8 F -0.157 7.157 9 F -0.169 7.169 10 S 0.441 5.559 11 C -0.329 4.329 12 C -0.095 4.095 13 C 0.323 3.677 14 O -0.469 6.469 15 N -0.377 5.377 16 C -0.011 4.011 17 C 0.004 3.996 18 C -0.566 4.566 19 H 0.083 0.917 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.781 3.219 23 H -0.192 1.192 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.017 4.017 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.258 17.339 5.594 23.135 hybrid contribution -1.212 -0.891 0.034 1.505 sum 13.046 16.448 5.628 21.735 Atomic orbital electron populations 1.20425 0.86048 1.04335 1.02985 1.20368 0.99111 0.85971 1.01828 1.66085 1.04895 1.32128 1.14937 1.26418 0.94247 0.98614 1.07550 1.21572 1.00686 0.98040 0.91943 1.20385 0.74228 0.74728 0.90114 1.93208 1.85486 1.54334 1.83673 1.93215 1.67933 1.57541 1.96975 1.93220 1.48820 1.91239 1.83591 1.83708 1.05279 1.00814 1.66080 1.25306 0.96305 0.99581 1.11689 1.20011 1.05152 0.90547 0.93797 1.20437 0.75780 0.79844 0.91608 1.90647 1.53190 1.55217 1.47802 1.49988 1.62323 1.12137 1.13207 1.23456 0.96847 0.83527 0.97222 1.20262 0.92663 0.94729 0.91976 1.21177 1.20246 0.92119 1.23105 0.91666 1.25713 0.94584 1.02782 0.94652 1.70032 1.22320 1.37304 1.25796 0.85657 0.77982 0.80233 0.78069 1.19219 1.21382 1.19901 1.23230 0.98142 0.90785 0.89542 0.91331 0.89458 0.89549 0.82032 0.82643 0.85629 0.85046 0.89821 0.91378 0.94131 0.92645 0.92815 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.06 71.24 0.72 -1.18 16 2 C 0.06 1.65 6.74 41.52 0.28 1.93 16 3 N -0.47 -12.49 10.53 -179.39 -1.89 -14.38 16 4 C 0.01 0.19 6.11 88.52 0.54 0.73 16 5 C -0.08 -1.10 5.85 29.85 0.17 -0.92 16 6 C 0.46 7.53 3.15 71.98 0.23 7.76 16 7 F -0.19 -3.39 17.02 44.97 0.77 -2.63 16 8 F -0.18 -2.66 17.32 44.97 0.78 -1.88 16 9 F -0.19 -3.96 17.02 44.97 0.77 -3.20 16 10 S 0.18 4.16 23.18 -56.49 -1.31 2.85 16 11 C -0.21 -5.60 5.08 24.64 0.13 -5.48 16 12 C -0.05 -1.41 5.75 29.10 0.17 -1.24 16 13 C 0.53 18.83 8.07 87.66 0.71 19.53 16 14 O -0.59 -24.57 16.81 -3.03 -0.05 -24.62 16 15 N -0.64 -23.86 3.69 -857.68 -3.16 -27.02 16 16 C 0.11 4.24 8.00 83.27 0.67 4.90 16 17 C 0.02 1.03 3.79 -11.11 -0.04 0.98 16 18 C -0.53 -25.69 8.83 25.60 0.23 -25.47 16 19 H 0.07 3.07 7.81 -2.91 -0.02 3.05 16 20 C 0.02 1.16 5.46 84.66 0.46 1.62 16 21 N -0.92 -48.33 13.26 21.45 0.28 -48.04 16 22 Si 0.95 39.53 29.54 68.60 2.03 41.56 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.29 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 C 0.11 4.16 8.17 83.19 0.68 4.84 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.09 1.85 6.72 -2.39 -0.02 1.83 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.13 3.03 6.76 -2.39 -0.02 3.01 16 34 H 0.08 3.06 8.10 -2.39 -0.02 3.04 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 37 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 Total: -1.00 -62.98 365.67 4.24 -58.74 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.10 Total: 10.59 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 4.93 Total: 8.02 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -4.77 Total: -89.45 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 2.31 Total: -7.70 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.31 Total: 2.85 kcal Total: -62.98 4.24 -58.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.044 kcal (2) G-P(sol) polarization free energy of solvation -62.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds