Wall clock time and date at job start Wed Apr 1 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47402 * 2 1 4 4 O 1.45194 * 109.46970 * 120.00790 * 2 1 3 5 5 C 1.34747 * 117.00007 * 269.99548 * 4 2 1 6 6 O 1.21506 * 119.99443 * 359.97438 * 5 4 2 7 7 C 1.47525 * 120.00258 * 180.02562 * 5 4 2 8 8 C 1.40214 * 119.86153 * 359.72849 * 7 5 4 9 9 C 1.36192 * 120.07132 * 179.71787 * 8 7 5 10 10 C 1.39602 * 120.44555 * 0.55652 * 9 8 7 11 11 S 1.76144 * 131.52996 * 179.74453 * 10 9 8 12 12 C 1.70626 * 90.85828 * 179.97438 * 11 10 9 13 13 N 1.27847 * 111.59110 * 0.02562 * 12 11 10 14 14 C 1.34745 * 117.84133 * 359.97438 * 13 12 11 15 15 C 1.38783 * 119.86014 * 179.97438 * 7 5 4 16 16 C 1.50702 * 109.46758 * 240.00083 * 2 1 3 17 17 O 1.21279 * 120.00127 * 255.65286 * 16 2 1 18 18 N 1.34783 * 119.99764 * 75.37740 * 16 2 1 19 19 C 1.46495 * 120.00016 * 5.43448 * 18 16 2 20 20 C 1.46496 * 119.99686 * 185.43814 * 18 16 2 21 21 C 1.50697 * 109.47338 * 90.00156 * 20 18 16 22 22 H 1.08000 * 120.00014 * 359.97438 * 21 20 18 23 23 C 1.37886 * 120.00469 * 179.97438 * 21 20 18 24 24 N 1.31513 * 120.00357 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99255 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47021 * 90.00459 * 25 23 21 27 27 H 1.48505 * 109.46643 * 210.00220 * 25 23 21 28 28 H 1.48499 * 109.47344 * 329.99723 * 25 23 21 29 29 H 1.09000 * 109.47032 * 65.10596 * 1 2 3 30 30 H 1.08999 * 109.47431 * 185.11112 * 1 2 3 31 31 H 1.08999 * 109.47017 * 305.10925 * 1 2 3 32 32 H 1.07997 * 119.96325 * 359.97438 * 8 7 5 33 33 H 1.08007 * 119.78136 * 180.29580 * 9 8 7 34 34 H 1.07999 * 124.20391 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.97695 * 359.97438 * 15 7 5 36 36 H 1.09004 * 109.46983 * 84.91502 * 19 18 16 37 37 H 1.09003 * 109.47332 * 204.91639 * 19 18 16 38 38 H 1.08996 * 109.47530 * 324.91799 * 19 18 16 39 39 H 1.09000 * 109.46932 * 209.99905 * 20 18 16 40 40 H 1.08998 * 109.47726 * 329.99958 * 20 18 16 41 41 H 0.96995 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2179 0.0666 2.2853 6 8 1.9979 1.2612 2.2544 7 6 2.7095 -0.5610 3.5266 8 6 2.9581 -1.9405 3.5603 9 6 3.4175 -2.5235 4.7022 10 6 3.6335 -1.7582 5.8496 11 16 4.2046 -2.1985 7.4567 12 6 4.0764 -0.5777 7.9744 13 7 3.6537 0.1832 7.0380 14 6 3.3866 -0.3787 5.8428 15 6 2.9191 0.2156 4.6575 16 6 2.0323 -0.7104 -1.2305 17 8 2.4797 -1.8341 -1.1418 18 7 1.9790 -0.0990 -2.4305 19 6 1.5449 1.2971 -2.5227 20 6 2.3552 -0.8307 -3.6426 21 6 1.1390 -1.5103 -4.2171 22 1 0.1816 -1.4078 -3.7279 23 6 1.2484 -2.2630 -5.3672 24 7 0.1872 -2.8565 -5.8682 25 14 2.9043 -2.4396 -6.2136 26 1 3.6154 -3.6236 -5.6679 27 1 2.6975 -2.6158 -7.6736 28 1 3.7162 -1.2198 -5.9724 29 1 -0.3633 0.4326 -0.9322 30 1 -0.3634 -1.0235 0.0915 31 1 -0.3633 0.5910 0.8407 32 1 2.7891 -2.5408 2.6786 33 1 3.6119 -3.5857 4.7216 34 1 4.3211 -0.2371 8.9696 35 1 2.7226 1.2772 4.6271 36 1 2.3949 1.9547 -2.3408 37 1 1.1442 1.4881 -3.5182 38 1 0.7724 1.4874 -1.7775 39 1 2.7625 -0.1343 -4.3757 40 1 3.1076 -1.5799 -3.3961 41 1 0.2641 -3.3856 -6.6774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910200538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:56 Heat of formation + Delta-G solvation = -67.605592 kcal Electronic energy + Delta-G solvation = -27114.100189 eV Core-core repulsion = 23085.689831 eV Total energy + Delta-G solvation = -4028.410359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17411 -41.37959 -40.52683 -38.12203 -37.58614 -36.73303 -34.81386 -33.32238 -32.44392 -31.26884 -30.25139 -27.64250 -26.66058 -26.09755 -25.36509 -23.79643 -23.27701 -21.77337 -20.42448 -19.95442 -19.14626 -18.90504 -18.36014 -17.69428 -17.37583 -17.31183 -17.03483 -16.71595 -16.35480 -16.02254 -15.89139 -15.15166 -15.09565 -14.96904 -14.74631 -14.51974 -14.35546 -14.06798 -13.74826 -13.68435 -13.46271 -13.24926 -13.18946 -13.06017 -12.87034 -12.62487 -12.45253 -12.25707 -12.04073 -12.01072 -11.84946 -11.73752 -11.34067 -10.82750 -10.77288 -10.70703 -10.00424 -9.50868 -9.28253 -8.33355 -6.38785 -0.82982 -0.58232 0.12702 0.60039 0.98329 1.08173 1.34729 1.38238 1.41196 1.46293 1.52300 2.25890 2.31706 2.46996 2.92176 3.00778 3.33605 3.35429 3.40479 3.72405 3.78422 3.85203 3.96635 4.05765 4.25294 4.34957 4.47128 4.53748 4.57224 4.61046 4.76001 4.83826 4.88348 4.91133 4.91996 5.00902 5.07032 5.14173 5.34436 5.43300 5.51264 6.21467 6.38679 6.43051 6.52413 6.62828 7.12541 7.27829 8.82989 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.002103 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.512843 B =13307.958241 C =14016.287664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.126 0.874 4 O -0.332 6.332 5 C 0.514 3.486 6 O -0.518 6.518 7 C -0.117 4.117 8 C -0.057 4.057 9 C -0.072 4.072 10 C -0.175 4.175 11 S 0.168 5.832 12 C 0.074 3.926 13 N -0.494 5.494 14 C 0.049 3.951 15 C 0.002 3.998 16 C 0.505 3.495 17 O -0.571 6.571 18 N -0.597 5.597 19 C 0.064 3.936 20 C 0.223 3.777 21 C -0.537 4.537 22 H 0.035 0.965 23 C 0.013 3.987 24 N -0.942 5.942 25 Si 0.945 3.055 26 H -0.277 1.277 27 H -0.276 1.276 28 H -0.238 1.238 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.247 0.753 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 6.172 28.323 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.144 0.856 4 O -0.247 6.247 5 C 0.359 3.641 6 O -0.408 6.408 7 C -0.121 4.121 8 C -0.079 4.079 9 C -0.094 4.094 10 C -0.294 4.294 11 S 0.423 5.577 12 C -0.230 4.230 13 N -0.207 5.207 14 C -0.070 4.070 15 C -0.019 4.019 16 C 0.291 3.709 17 O -0.450 6.450 18 N -0.329 5.329 19 C -0.078 4.078 20 C 0.101 3.899 21 C -0.576 4.576 22 H 0.053 0.947 23 C -0.186 4.186 24 N -0.582 5.582 25 Si 0.768 3.232 26 H -0.202 1.202 27 H -0.201 1.201 28 H -0.161 1.161 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.262 0.738 35 H 0.166 0.834 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.726 5.562 28.865 30.663 hybrid contribution -0.231 0.217 -1.656 1.686 sum 8.495 5.779 27.208 29.084 Atomic orbital electron populations 1.22182 0.90186 1.04131 1.05301 1.22579 0.97188 0.97309 0.80567 0.85606 1.86664 1.76835 1.41490 1.19737 1.21274 0.73945 0.84847 0.84000 1.90815 1.49228 1.16211 1.84537 1.18737 1.07576 0.95118 0.90715 1.21298 0.94474 0.92805 0.99325 1.20332 0.98608 1.01305 0.89163 1.24563 1.05965 0.97550 1.01360 1.83988 1.63420 1.10716 0.99554 1.28913 0.97393 0.93146 1.03593 1.66251 1.16056 1.38696 0.99723 1.19095 1.04906 0.89981 0.93057 1.20675 0.92531 1.00620 0.88082 1.20527 0.78974 0.86316 0.85037 1.90650 1.47240 1.20711 1.86395 1.47814 1.65039 1.14166 1.05906 1.22214 1.01189 0.79540 1.04839 1.19452 0.95013 0.92673 0.82785 1.21523 0.95175 1.31233 1.09621 0.94709 1.25815 1.00779 0.94311 0.97675 1.70036 1.31540 1.33819 1.22801 0.85755 0.79515 0.80202 0.77737 1.20231 1.20102 1.16076 0.88644 0.91856 0.88734 0.82818 0.81408 0.73757 0.83430 0.90025 0.89989 0.89491 0.92538 0.96005 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.20 71.98 0.66 -3.78 16 2 C 0.08 2.59 2.14 29.85 0.06 2.66 16 3 H 0.13 3.46 6.35 -2.39 -0.02 3.44 16 4 O -0.33 -10.68 8.69 -50.33 -0.44 -11.12 16 5 C 0.51 14.67 7.86 70.27 0.55 15.23 16 6 O -0.52 -15.75 15.56 19.82 0.31 -15.44 16 7 C -0.12 -2.84 5.86 -20.22 -0.12 -2.96 16 8 C -0.06 -1.18 9.55 22.27 0.21 -0.97 16 9 C -0.07 -1.19 9.99 22.12 0.22 -0.96 16 10 C -0.17 -3.00 6.57 23.06 0.15 -2.85 16 11 S 0.17 1.67 23.17 -56.49 -1.31 0.36 16 12 C 0.07 0.77 12.09 130.82 1.58 2.35 16 13 N -0.49 -9.30 10.57 -194.91 -2.06 -11.36 16 14 C 0.05 1.04 6.98 39.73 0.28 1.31 16 15 C 0.00 0.04 9.65 22.98 0.22 0.26 16 16 C 0.50 20.90 6.96 87.66 0.61 21.51 16 17 O -0.57 -28.88 16.13 15.26 0.25 -28.64 16 18 N -0.60 -23.95 2.86 -851.15 -2.43 -26.39 16 19 C 0.06 1.79 9.80 127.77 1.25 3.04 16 20 C 0.22 10.62 4.25 85.63 0.36 10.99 16 21 C -0.54 -30.82 9.94 25.60 0.25 -30.56 16 22 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 23 C 0.01 0.73 5.47 84.66 0.46 1.19 16 24 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 25 Si 0.95 43.68 27.47 68.60 1.88 45.57 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 28 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 29 H 0.10 2.50 6.24 -2.39 -0.01 2.48 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.15 3.27 7.59 -2.91 -0.02 3.25 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.25 0.27 8.06 -2.91 -0.02 0.25 16 35 H 0.15 3.38 7.60 -2.91 -0.02 3.36 16 36 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 2.34 8.03 -2.39 -0.02 2.32 16 38 H 0.09 2.02 4.86 -2.39 -0.01 2.00 16 39 H 0.06 2.45 7.13 -2.39 -0.02 2.43 16 40 H 0.02 1.12 6.79 -2.39 -0.02 1.11 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.88 366.95 4.30 -76.59 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.03 Total: 12.26 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.77 Total: 16.45 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.19 Total: -96.02 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: 0.12 Total: -55.19 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.31 Total: 0.36 kcal Total: -80.88 4.30 -76.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910200538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.980 kcal (2) G-P(sol) polarization free energy of solvation -80.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds