Wall clock time and date at job start Wed Apr 1 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47202 * 2 1 4 4 O 1.45199 * 109.47170 * 120.00525 * 2 1 3 5 5 C 1.34806 * 116.99673 * 269.99664 * 4 2 1 6 6 O 1.21539 * 119.99730 * 359.72595 * 5 4 2 7 7 C 1.47225 * 119.99553 * 180.02562 * 5 4 2 8 8 N 1.29740 * 121.84365 * 359.75033 * 7 5 4 9 9 S 1.55997 * 111.73918 * 179.97438 * 8 7 5 10 10 C 1.76254 * 97.57289 * 359.97438 * 9 8 7 11 11 C 1.38698 * 134.17937 * 180.02562 * 10 9 8 12 12 C 1.36801 * 119.62834 * 179.97438 * 11 10 9 13 13 C 1.38905 * 120.30845 * 0.02562 * 12 11 10 14 14 C 1.36340 * 121.02800 * 359.95359 * 13 12 11 15 15 C 1.40401 * 119.96494 * 359.77429 * 14 13 12 16 16 C 1.50697 * 109.47044 * 240.00483 * 2 1 3 17 17 O 1.21288 * 120.00010 * 256.02475 * 16 2 1 18 18 N 1.34775 * 120.00097 * 76.02475 * 16 2 1 19 19 C 1.46500 * 120.00142 * 5.36392 * 18 16 2 20 20 C 1.46502 * 119.99934 * 185.36450 * 18 16 2 21 21 C 1.50703 * 109.47243 * 90.00368 * 20 18 16 22 22 H 1.08003 * 119.99948 * 359.97438 * 21 20 18 23 23 C 1.37872 * 120.00043 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00390 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99876 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47095 * 59.99783 * 25 23 21 27 27 H 1.48500 * 109.47143 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47213 * 299.99924 * 25 23 21 29 29 H 1.08999 * 109.47309 * 66.13366 * 1 2 3 30 30 H 1.09005 * 109.46792 * 186.13274 * 1 2 3 31 31 H 1.09003 * 109.47203 * 306.13216 * 1 2 3 32 32 H 1.08002 * 120.18234 * 359.97323 * 11 10 9 33 33 H 1.07998 * 119.84616 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.48346 * 179.97438 * 13 12 11 35 35 H 1.07995 * 120.01505 * 180.02562 * 14 13 12 36 36 H 1.08996 * 109.46917 * 84.82208 * 19 18 16 37 37 H 1.08997 * 109.47362 * 204.82069 * 19 18 16 38 38 H 1.08996 * 109.46700 * 324.82585 * 19 18 16 39 39 H 1.08999 * 109.47145 * 210.00033 * 20 18 16 40 40 H 1.08997 * 109.47307 * 330.00217 * 20 18 16 41 41 H 0.96995 * 120.00435 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2181 0.0671 2.2857 6 8 2.0022 1.2627 2.2535 7 6 2.7087 -0.5593 3.5245 8 7 2.9517 -1.8316 3.5984 9 16 3.4604 -2.2413 5.0151 10 6 3.4118 -0.6406 5.7512 11 6 3.7165 -0.1463 7.0108 12 6 3.5660 1.1889 7.2680 13 6 3.1104 2.0470 6.2752 14 6 2.8055 1.5823 5.0302 15 6 2.9553 0.2180 4.7348 16 6 2.0323 -0.7103 -1.2305 17 8 2.4736 -1.8366 -1.1429 18 7 1.9912 -0.0940 -2.4284 19 6 1.5689 1.3060 -2.5177 20 6 2.3688 -0.8240 -3.6411 21 6 1.1505 -1.4915 -4.2254 22 1 0.1911 -1.3832 -3.7416 23 6 1.2610 -2.2414 -5.3771 24 7 2.4294 -2.3738 -5.9661 25 14 -0.2489 -3.0694 -6.1010 26 1 -1.2639 -2.0395 -6.4394 27 1 0.1337 -3.8093 -7.3303 28 1 -0.8172 -4.0171 -5.1090 29 1 -0.3634 0.4158 -0.9398 30 1 -0.3633 -1.0218 0.1098 31 1 -0.3634 0.6060 0.8300 32 1 4.0705 -0.8118 7.7843 33 1 3.8018 1.5775 8.2476 34 1 2.9961 3.0986 6.4929 35 1 2.4529 2.2641 4.2705 36 1 2.4228 1.9559 -2.3267 37 1 1.1774 1.5045 -3.5154 38 1 0.7925 1.4992 -1.7776 39 1 2.7860 -0.1282 -4.3690 40 1 3.1135 -1.5802 -3.3930 41 1 2.5071 -2.9011 -6.7765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923025272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:33 Heat of formation + Delta-G solvation = -72.476228 kcal Electronic energy + Delta-G solvation = -27328.018023 eV Core-core repulsion = 23299.396458 eV Total energy + Delta-G solvation = -4028.621565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22643 -41.16054 -40.33111 -38.15122 -37.74925 -36.73391 -34.88410 -33.12175 -32.14695 -31.71888 -29.75409 -28.07580 -27.58118 -26.02746 -24.65554 -24.04333 -23.39973 -21.80970 -20.48363 -20.08532 -19.09028 -18.71645 -18.29534 -17.66590 -17.57251 -17.24044 -16.97108 -16.39642 -16.27379 -16.13117 -15.82085 -15.57503 -14.88536 -14.82656 -14.75431 -14.34302 -14.11027 -13.71703 -13.59811 -13.44347 -13.35908 -13.17599 -13.15261 -12.89798 -12.82797 -12.70057 -12.55083 -12.47593 -12.21757 -12.05264 -11.81560 -11.76279 -11.65458 -10.96173 -10.69563 -10.66255 -10.16525 -9.56362 -9.06696 -8.24957 -6.40106 -0.96050 -0.06049 0.14175 0.39144 0.45415 1.12790 1.35815 1.40744 1.46919 1.50840 1.55315 2.24913 2.39643 2.60469 3.05033 3.06118 3.31997 3.38436 3.64809 3.75420 3.76388 4.04225 4.25677 4.28588 4.36554 4.44540 4.47094 4.53447 4.62212 4.73321 4.81979 4.87161 4.94397 5.02690 5.04205 5.13154 5.17592 5.32741 5.44123 5.48599 5.75410 5.81878 6.00554 6.31047 6.54758 6.68234 7.15392 7.32810 8.82622 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.002291 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.304417 B =12217.194092 C =12875.815961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.078 3.922 3 H 0.129 0.871 4 O -0.331 6.331 5 C 0.539 3.461 6 O -0.495 6.495 7 C 0.069 3.931 8 N -0.501 5.501 9 S 0.457 5.543 10 C -0.215 4.215 11 C -0.068 4.068 12 C -0.077 4.077 13 C -0.102 4.102 14 C -0.071 4.071 15 C -0.107 4.107 16 C 0.501 3.499 17 O -0.580 6.580 18 N -0.599 5.599 19 C 0.066 3.934 20 C 0.259 3.741 21 C -0.545 4.545 22 H 0.059 0.941 23 C 0.007 3.993 24 N -0.928 5.928 25 Si 0.970 3.030 26 H -0.256 1.256 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.032 0.968 40 H -0.003 1.003 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 12.313 30.910 33.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.147 0.853 4 O -0.246 6.246 5 C 0.379 3.621 6 O -0.382 6.382 7 C -0.115 4.115 8 N -0.331 5.331 9 S 0.617 5.383 10 C -0.336 4.336 11 C -0.089 4.089 12 C -0.100 4.100 13 C -0.121 4.121 14 C -0.093 4.093 15 C -0.116 4.116 16 C 0.287 3.713 17 O -0.459 6.459 18 N -0.331 5.331 19 C -0.076 4.076 20 C 0.138 3.862 21 C -0.584 4.584 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.181 1.181 27 H -0.204 1.204 28 H -0.204 1.204 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.184 0.816 35 H 0.156 0.844 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.015 0.985 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.459 9.753 30.387 31.917 hybrid contribution -0.739 0.853 -1.440 1.829 sum -0.280 10.605 28.947 30.830 Atomic orbital electron populations 1.22190 0.89534 1.04083 1.05733 1.22711 0.97737 0.97211 0.80300 0.85322 1.86815 1.76442 1.41543 1.19785 1.20298 0.74312 0.84631 0.82908 1.90771 1.48725 1.14719 1.83995 1.20855 1.08626 0.88224 0.93750 1.71326 1.16679 1.19147 1.25918 1.81157 1.56221 1.07243 0.93647 1.24578 1.08145 1.00528 1.00336 1.20492 0.98663 0.97152 0.92630 1.21637 0.95233 0.92106 1.01032 1.21372 0.96800 1.02434 0.91479 1.20909 0.98040 0.91451 0.98903 1.19561 1.05196 0.96901 0.89940 1.20600 0.79131 0.86383 0.85150 1.90675 1.47630 1.21262 1.86361 1.48066 1.64876 1.13927 1.06251 1.22186 1.01127 0.79386 1.04892 1.18874 0.95236 0.91307 0.80785 1.21663 0.95118 1.32074 1.09511 0.92325 1.25895 0.99541 0.96617 0.97175 1.70048 1.25445 1.41101 1.20176 0.85438 0.79036 0.78744 0.77425 1.18075 1.20392 1.20423 0.87913 0.92112 0.88394 0.81297 0.80433 0.81636 0.84447 0.90794 0.89897 0.88905 0.94957 0.98487 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 9.19 71.98 0.66 -3.88 16 2 C 0.08 2.78 2.15 29.85 0.06 2.84 16 3 H 0.13 3.87 6.31 -2.39 -0.02 3.85 16 4 O -0.33 -12.93 9.35 -50.93 -0.48 -13.40 16 5 C 0.54 18.02 7.92 70.18 0.56 18.58 16 6 O -0.49 -15.41 14.27 19.71 0.28 -15.13 16 7 C 0.07 2.10 6.82 43.81 0.30 2.40 16 8 N -0.50 -15.55 11.01 -64.51 -0.71 -16.26 16 9 S 0.46 9.30 23.36 -56.49 -1.32 7.98 16 10 C -0.21 -3.84 6.73 22.97 0.15 -3.69 16 11 C -0.07 -0.66 10.03 22.04 0.22 -0.44 16 12 C -0.08 -0.51 10.00 22.09 0.22 -0.29 16 13 C -0.10 -1.02 9.93 21.99 0.22 -0.80 16 14 C -0.07 -1.29 9.57 22.35 0.21 -1.07 16 15 C -0.11 -2.48 6.10 -20.17 -0.12 -2.60 16 16 C 0.50 23.25 6.95 87.66 0.61 23.86 16 17 O -0.58 -33.63 16.13 15.21 0.25 -33.38 16 18 N -0.60 -26.69 2.86 -851.14 -2.43 -29.12 16 19 C 0.07 2.01 9.79 127.77 1.25 3.26 16 20 C 0.26 14.37 5.18 85.63 0.44 14.81 16 21 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16 22 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 23 C 0.01 0.40 5.46 84.65 0.46 0.86 16 24 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 25 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 29 H 0.10 2.64 6.33 -2.39 -0.02 2.62 16 30 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.18 -0.23 8.06 -2.91 -0.02 -0.26 16 34 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.14 2.67 6.64 -2.91 -0.02 2.65 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.54 8.03 -2.39 -0.02 2.52 16 38 H 0.09 2.22 4.92 -2.39 -0.01 2.21 16 39 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 40 H 0.00 -0.20 7.35 -2.39 -0.02 -0.21 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -85.25 368.69 4.47 -80.77 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.08 Total: 5.57 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 5.49 Total: 22.33 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -2.86 Total: -102.06 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: 0.05 Total: -61.91 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 9.30 SS G_CDS: -1.32 Total: 7.98 kcal Total: -85.25 4.47 -80.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923025272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.295 kcal (2) G-P(sol) polarization free energy of solvation -85.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds