Wall clock time and date at job start Wed Apr 1 2020 04:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21340 * 120.00364 * 0.02562 * 12 11 9 14 14 C 1.49452 * 119.99661 * 179.97438 * 12 11 9 15 15 O 1.21343 * 120.00414 * 0.02562 * 14 12 11 16 16 N 1.34783 * 119.99992 * 179.97438 * 14 12 11 17 17 C 1.46497 * 120.00346 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.47282 * 180.02562 * 17 16 14 19 19 C 1.38248 * 119.96980 * 269.72558 * 18 17 16 20 20 C 1.38197 * 120.02024 * 179.72261 * 19 18 17 21 21 C 1.38459 * 119.97556 * 0.57519 * 20 19 18 22 22 F 1.35105 * 120.02466 * 179.68046 * 21 20 19 23 23 C 1.38459 * 119.94946 * 359.69776 * 21 20 19 24 24 C 1.38193 * 119.97402 * 0.02562 * 23 21 20 25 25 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 26 26 F 1.39903 * 109.47440 * 60.00123 * 25 9 7 27 27 F 1.39899 * 109.47255 * 180.02562 * 25 9 7 28 28 F 1.39900 * 109.47102 * 299.99874 * 25 9 7 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 31 31 H 0.97005 * 119.99774 * 0.02562 * 16 14 12 32 32 H 1.09005 * 109.47146 * 300.00202 * 17 16 14 33 33 H 1.09003 * 109.47000 * 59.99901 * 17 16 14 34 34 H 1.07999 * 119.98926 * 359.97438 * 19 18 17 35 35 H 1.08005 * 120.01347 * 180.25465 * 20 19 18 36 36 H 1.08001 * 120.01287 * 179.97438 * 23 21 20 37 37 H 1.07997 * 119.99241 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7188 -4.9700 -0.9383 14 6 2.8082 -5.9481 -0.4943 15 8 3.9264 -5.7904 -0.0502 16 7 2.4419 -7.1479 -0.9870 17 6 3.3939 -8.2614 -0.9870 18 6 2.7415 -9.4801 -1.5874 19 6 2.0627 -10.3704 -0.7764 20 6 1.4592 -11.4852 -1.3266 21 6 1.5448 -11.7166 -2.6891 22 9 0.9607 -12.8095 -3.2271 23 6 2.2297 -10.8271 -3.4996 24 6 2.8275 -9.7100 -2.9479 25 6 0.3719 -2.5805 1.2490 26 9 -0.5373 -1.5171 1.2496 27 9 -0.3272 -3.7922 1.2493 28 9 1.1766 -2.5067 2.3910 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4866 0.3545 31 1 1.5479 -7.2741 -1.3417 32 1 4.2697 -7.9908 -1.5769 33 1 3.6984 -8.4791 0.0367 34 1 2.0006 -10.1924 0.2871 35 1 0.9255 -12.1785 -0.6934 36 1 2.2974 -11.0068 -4.5624 37 1 3.3622 -9.0163 -3.5798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:23 Heat of formation + Delta-G solvation = -225.578185 kcal Electronic energy + Delta-G solvation = -30075.094958 eV Core-core repulsion = 24931.764478 eV Total energy + Delta-G solvation = -5143.330481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.26379 -48.44329 -46.09654 -45.70120 -40.40993 -39.48576 -38.07438 -35.44006 -34.63481 -32.64165 -31.57329 -31.36558 -28.82695 -26.74589 -24.70345 -23.82983 -23.48953 -21.86365 -21.24291 -20.03088 -18.81905 -18.04490 -17.11850 -16.96728 -16.85227 -16.73819 -16.47730 -16.11985 -15.94618 -15.65085 -15.44995 -15.12237 -14.86412 -14.42329 -14.16176 -13.96613 -13.88531 -13.44264 -13.23279 -13.01416 -12.69511 -12.62616 -12.52035 -12.48359 -12.35591 -12.06628 -12.01228 -11.90198 -11.42655 -11.38161 -11.25641 -10.91387 -10.89625 -10.44765 -9.78604 -9.54163 -9.38139 -9.31621 -8.97940 -8.80538 -8.48106 -6.30792 -4.55374 0.60125 0.80975 1.73840 2.60749 3.17848 3.20641 3.22986 3.25972 3.55892 3.84599 4.02186 4.17949 4.21650 4.28420 4.45581 4.48712 4.79205 4.82758 4.85692 4.88384 5.22751 5.33440 5.49377 5.56725 5.69802 5.70774 5.76299 5.77742 6.06752 6.08764 6.13656 6.43947 6.72571 6.85986 7.14712 7.35767 7.55299 7.81412 8.12596 8.37068 8.55335 9.12598 10.60869 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002277 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.744005 B =12295.529141 C =12654.602981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.066 3.934 3 Si 0.918 3.082 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.243 3.757 10 H 0.090 0.910 11 N -0.677 5.677 12 C 0.498 3.502 13 O -0.517 6.517 14 C 0.512 3.488 15 O -0.520 6.520 16 N -0.704 5.704 17 C 0.161 3.839 18 C -0.120 4.120 19 C -0.068 4.068 20 C -0.156 4.156 21 C 0.105 3.895 22 F -0.139 7.139 23 C -0.156 4.156 24 C -0.068 4.068 25 C 0.417 3.583 26 F -0.134 7.134 27 F -0.218 7.218 28 F -0.206 7.206 29 H 0.270 0.730 30 H 0.412 0.588 31 H 0.415 0.585 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 -18.270 -3.808 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.098 0.902 9 C 0.138 3.862 10 H 0.108 0.892 11 N -0.328 5.328 12 C 0.277 3.723 13 O -0.394 6.394 14 C 0.293 3.707 15 O -0.395 6.395 16 N -0.359 5.359 17 C 0.038 3.962 18 C -0.120 4.120 19 C -0.087 4.087 20 C -0.174 4.174 21 C 0.086 3.914 22 F -0.118 7.118 23 C -0.174 4.174 24 C -0.087 4.087 25 C 0.361 3.639 26 F -0.115 7.115 27 F -0.200 7.200 28 F -0.188 7.188 29 H 0.081 0.919 30 H 0.248 0.752 31 H 0.251 0.749 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.509 -18.151 -3.796 19.083 hybrid contribution 0.044 0.498 0.204 0.540 sum 4.553 -17.652 -3.592 18.580 Atomic orbital electron populations 1.70378 1.05886 1.27703 1.43270 1.25083 0.95194 1.00198 0.93849 0.86217 0.79313 0.80983 0.79069 1.20826 1.19688 1.19686 1.20844 0.93971 0.87802 1.56507 0.90154 1.19911 0.88610 0.85469 0.92199 0.89241 1.45941 1.18106 1.09444 1.59277 1.19962 0.87575 0.84275 0.80446 1.90761 1.20477 1.82736 1.45381 1.20475 0.87887 0.84003 0.78339 1.90742 1.20948 1.83139 1.44691 1.45814 1.17883 1.09587 1.62568 1.20249 0.91508 0.82547 1.01883 1.19936 1.00997 0.97108 0.93994 1.21028 0.94573 0.92540 1.00522 1.21183 1.02899 0.99937 0.93414 1.17813 0.96467 0.85055 0.92090 1.91516 1.82074 1.51675 1.86530 1.21178 1.00207 0.95326 1.00735 1.21019 0.97237 0.96091 0.94324 1.23089 0.80835 0.72896 0.87090 1.93418 1.68262 1.53634 1.96187 1.93066 1.81528 1.48444 1.96982 1.93008 1.74307 1.96162 1.55348 0.91910 0.75228 0.74890 0.89852 0.89872 0.84489 0.84424 0.84425 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.42 9.50 55.43 0.53 -21.89 16 2 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -13.90 8.46 -34.44 -0.29 -14.19 16 8 H 0.08 1.92 7.74 -52.49 -0.41 1.51 16 9 C 0.24 5.89 2.21 -69.09 -0.15 5.73 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.68 -13.98 4.98 -55.37 -0.28 -14.25 16 12 C 0.50 9.57 7.42 -11.58 -0.09 9.48 16 13 O -0.52 -10.94 15.05 5.51 0.08 -10.86 16 14 C 0.51 8.12 7.89 -11.58 -0.09 8.02 16 15 O -0.52 -8.98 16.48 5.50 0.09 -8.89 16 16 N -0.70 -8.49 5.54 -61.91 -0.34 -8.83 16 17 C 0.16 1.48 5.80 -5.19 -0.03 1.45 16 18 C -0.12 -0.95 5.25 -104.61 -0.55 -1.50 16 19 C -0.07 -0.51 9.70 -39.59 -0.38 -0.89 16 20 C -0.16 -1.19 10.03 -39.52 -0.40 -1.59 16 21 C 0.11 0.90 7.30 -39.42 -0.29 0.61 16 22 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 23 C -0.16 -1.18 10.03 -39.52 -0.40 -1.58 16 24 C -0.07 -0.50 9.70 -39.59 -0.38 -0.89 16 25 C 0.42 10.44 2.81 37.16 0.10 10.54 16 26 F -0.13 -3.61 12.91 2.25 0.03 -3.58 16 27 F -0.22 -5.32 15.68 2.25 0.04 -5.29 16 28 F -0.21 -5.04 16.94 2.25 0.04 -5.00 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.41 7.91 8.01 -40.82 -0.33 7.59 16 31 H 0.41 4.82 7.94 -40.82 -0.32 4.50 16 32 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -29.49 344.97 -5.75 -35.24 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.12 Total: 7.90 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: -3.04 Total: 16.79 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.09 Total: -44.97 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 9 Polarization: -15.30 SS G_CDS: 0.14 Total: -15.16 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.49 -5.75 -35.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.337 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds