Wall clock time and date at job start Wed Apr 1 2020 04:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.46997 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47418 * 29.99823 * 3 2 1 6 6 H 1.48507 * 109.47103 * 149.99687 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 N 1.46492 * 109.47354 * 179.97438 * 9 7 2 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 9 7 13 13 O 1.21283 * 119.99840 * 359.97438 * 12 11 9 14 14 C 1.50701 * 120.00108 * 179.97438 * 12 11 9 15 15 N 1.46501 * 109.46787 * 179.97438 * 14 12 11 16 16 C 1.34780 * 119.99736 * 179.97438 * 15 14 12 17 17 O 1.21566 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.47725 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.39655 * 120.11631 * 359.72616 * 18 16 15 20 20 C 1.37833 * 119.87574 * 179.74021 * 19 18 16 21 21 C 1.38647 * 120.12378 * 0.51578 * 20 19 18 22 22 F 1.35094 * 119.88613 * 179.74026 * 21 20 19 23 23 C 1.38661 * 120.23720 * 359.76285 * 21 20 19 24 24 C 1.37843 * 120.11759 * 359.97438 * 23 21 20 25 25 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 26 26 F 1.39895 * 109.46931 * 180.02562 * 25 9 7 27 27 F 1.39897 * 109.47129 * 300.00544 * 25 9 7 28 28 F 1.39900 * 109.46764 * 60.00523 * 25 9 7 29 29 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00153 * 334.99428 * 11 9 7 31 31 H 1.08997 * 109.46862 * 299.99840 * 14 12 11 32 32 H 1.08993 * 109.46756 * 60.00116 * 14 12 11 33 33 H 0.97001 * 120.00530 * 0.02562 * 15 14 12 34 34 H 1.07999 * 120.05808 * 359.97438 * 19 18 16 35 35 H 1.08011 * 119.93509 * 180.25782 * 20 19 18 36 36 H 1.07999 * 119.94413 * 179.97438 * 23 21 20 37 37 H 1.07998 * 120.05645 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6126 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7196 -4.9698 0.9382 14 6 2.8162 -5.9578 0.4933 15 7 2.1823 -7.1423 1.0777 16 6 2.8735 -8.2947 1.1810 17 8 4.0231 -8.3512 0.7897 18 6 2.2342 -9.4892 1.7698 19 6 0.9156 -9.4255 2.2254 20 6 0.3222 -10.5445 2.7690 21 6 1.0353 -11.7289 2.8737 22 9 0.4507 -12.8213 3.4121 23 6 2.3467 -11.7961 2.4282 24 6 2.9481 -10.6845 1.8780 25 6 0.3719 -2.5805 -1.2490 26 9 -0.3280 -3.7918 -1.2486 27 9 -0.5372 -1.5172 -1.2495 28 9 1.1765 -2.5066 -2.3910 29 1 -0.4850 0.8400 -0.0004 30 1 3.0970 -3.4865 -0.3546 31 1 3.1199 -6.1757 -0.5306 32 1 3.6924 -5.6871 1.0824 33 1 1.2649 -7.0973 1.3897 34 1 0.3607 -8.5022 2.1484 35 1 -0.6990 -10.4975 3.1178 36 1 2.8979 -12.7210 2.5125 37 1 3.9696 -10.7378 1.5317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:58 Heat of formation + Delta-G solvation = -226.500354 kcal Electronic energy + Delta-G solvation = -30009.288102 eV Core-core repulsion = 24865.917633 eV Total energy + Delta-G solvation = -5143.370469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -49.32773 -48.45644 -46.11415 -45.71405 -40.49245 -39.26237 -38.20324 -35.11438 -34.41067 -32.74100 -31.62484 -31.27162 -29.25066 -27.06664 -24.66898 -23.88170 -23.29571 -21.72858 -20.69990 -20.16999 -18.84316 -17.92652 -17.31315 -17.08884 -16.81630 -16.75865 -16.34841 -16.03108 -15.97385 -15.70831 -15.31447 -15.28777 -14.93121 -14.47145 -14.31196 -14.03590 -13.58717 -13.53208 -13.05280 -13.04286 -12.93586 -12.77962 -12.59578 -12.50473 -12.38086 -12.27799 -12.07743 -11.91425 -11.43795 -11.26558 -10.96659 -10.90863 -10.50807 -10.23732 -9.77858 -9.58691 -9.56542 -9.36393 -9.07492 -8.83267 -8.46930 -6.33150 -4.57859 0.32273 0.81229 2.49028 2.80322 2.89261 3.13738 3.20398 3.22408 3.42247 3.67833 3.77400 4.13381 4.27725 4.42887 4.43937 4.46199 4.79863 4.83782 4.88397 4.98956 5.32741 5.35425 5.44367 5.49512 5.65737 5.71607 5.74880 5.75811 5.87471 6.07172 6.15770 6.37455 6.76918 6.93823 7.33165 7.33800 7.53138 7.96444 8.09841 8.37077 8.59732 9.10510 10.58442 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002221 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.311072 B =12603.668737 C =12995.330876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.087 0.913 11 N -0.704 5.704 12 C 0.501 3.499 13 O -0.536 6.536 14 C 0.100 3.900 15 N -0.708 5.708 16 C 0.561 3.439 17 O -0.539 6.539 18 C -0.143 4.143 19 C -0.054 4.054 20 C -0.160 4.160 21 C 0.122 3.878 22 F -0.136 7.136 23 C -0.164 4.164 24 C -0.030 4.030 25 C 0.417 3.583 26 F -0.218 7.218 27 F -0.136 7.136 28 F -0.208 7.208 29 H 0.269 0.731 30 H 0.403 0.597 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.412 0.588 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -16.821 3.829 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.097 0.903 9 C 0.140 3.860 10 H 0.105 0.895 11 N -0.353 5.353 12 C 0.285 3.715 13 O -0.413 6.413 14 C -0.028 4.028 15 N -0.363 5.363 16 C 0.349 3.651 17 O -0.417 6.417 18 C -0.146 4.146 19 C -0.072 4.072 20 C -0.179 4.179 21 C 0.103 3.897 22 F -0.114 7.114 23 C -0.182 4.182 24 C -0.049 4.049 25 C 0.360 3.640 26 F -0.200 7.200 27 F -0.117 7.117 28 F -0.190 7.190 29 H 0.080 0.920 30 H 0.237 0.763 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.252 0.748 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.231 -16.825 3.866 17.563 hybrid contribution 0.007 0.777 -0.287 0.829 sum 3.238 -16.047 3.579 16.758 Atomic orbital electron populations 1.70389 1.05890 1.27545 1.43376 1.25088 0.95178 1.00219 0.93911 0.86188 0.79547 0.81478 0.78515 1.20149 1.20760 1.19418 1.20871 0.93856 0.87974 1.56404 0.90287 1.19789 0.88661 0.85686 0.91885 0.89525 1.45997 1.17556 1.10296 1.61444 1.20410 0.88377 0.84227 0.78446 1.90690 1.21181 1.82771 1.46698 1.21128 0.95806 0.84501 1.01318 1.45613 1.18129 1.09745 1.62850 1.18068 0.85756 0.82609 0.78702 1.90787 1.17116 1.84522 1.49293 1.19984 0.95170 0.94884 1.04607 1.21320 0.93506 0.98544 0.93868 1.21125 1.01587 0.91719 1.03427 1.17998 0.91953 0.83482 0.96305 1.91525 1.84224 1.52365 1.83294 1.21146 0.93862 1.00631 1.02596 1.21143 1.00296 0.90019 0.93436 1.23136 0.80882 0.72836 0.87119 1.93065 1.81504 1.48485 1.96978 1.93412 1.68338 1.53732 1.96190 1.92998 1.74345 1.96175 1.55494 0.92004 0.76265 0.88204 0.88091 0.74848 0.84020 0.83844 0.83950 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.16 9.50 55.43 0.53 -21.64 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.40 29.54 -169.99 -5.02 14.38 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.55 -13.40 8.46 -34.44 -0.29 -13.69 16 8 H 0.08 1.80 7.74 -52.48 -0.41 1.39 16 9 C 0.25 5.68 2.21 -69.08 -0.15 5.53 16 10 H 0.09 2.24 7.58 -51.93 -0.39 1.85 16 11 N -0.70 -12.92 4.98 -54.93 -0.27 -13.20 16 12 C 0.50 8.58 7.43 -10.98 -0.08 8.50 16 13 O -0.54 -10.78 14.24 5.55 0.08 -10.70 16 14 C 0.10 1.31 6.15 -5.19 -0.03 1.28 16 15 N -0.71 -8.96 5.48 -62.47 -0.34 -9.30 16 16 C 0.56 7.16 7.77 -12.38 -0.10 7.06 16 17 O -0.54 -8.25 16.34 5.31 0.09 -8.16 16 18 C -0.14 -1.49 5.87 -104.97 -0.62 -2.11 16 19 C -0.05 -0.48 9.54 -39.20 -0.37 -0.85 16 20 C -0.16 -1.31 10.01 -39.58 -0.40 -1.71 16 21 C 0.12 1.06 7.31 -39.27 -0.29 0.77 16 22 F -0.14 -1.25 17.26 2.25 0.04 -1.21 16 23 C -0.16 -1.30 10.01 -39.57 -0.40 -1.70 16 24 C -0.03 -0.27 9.59 -39.20 -0.38 -0.65 16 25 C 0.42 10.13 2.81 37.16 0.10 10.24 16 26 F -0.22 -5.21 15.68 2.25 0.04 -5.18 16 27 F -0.14 -3.61 12.91 2.25 0.03 -3.58 16 28 F -0.21 -4.90 16.94 2.25 0.04 -4.87 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.40 6.26 8.54 -40.82 -0.35 5.92 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.41 5.01 5.47 -40.82 -0.22 4.79 16 34 H 0.14 1.11 6.40 -52.49 -0.34 0.77 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.15 1.26 7.65 -52.49 -0.40 0.86 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -30.14 340.64 -5.69 -35.83 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.93 Total: 8.27 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -3.09 Total: 14.22 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.09 Total: -44.13 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.14 Total: -14.84 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -5.69 -35.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.667 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds