Wall clock time and date at job start Wed Apr 1 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.46997 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47418 * 29.99823 * 3 2 1 6 6 H 1.48507 * 109.47103 * 149.99687 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 N 1.46492 * 109.47354 * 179.97438 * 9 7 2 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 9 7 13 13 O 1.21283 * 119.99840 * 359.97438 * 12 11 9 14 14 C 1.50701 * 120.00108 * 179.97438 * 12 11 9 15 15 N 1.46501 * 109.46787 * 179.97438 * 14 12 11 16 16 C 1.34780 * 119.99736 * 179.97438 * 15 14 12 17 17 O 1.21566 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.47725 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.39655 * 120.11631 * 359.72616 * 18 16 15 20 20 C 1.37833 * 119.87574 * 179.74021 * 19 18 16 21 21 C 1.38647 * 120.12378 * 0.51578 * 20 19 18 22 22 F 1.35094 * 119.88613 * 179.74026 * 21 20 19 23 23 C 1.38661 * 120.23720 * 359.76285 * 21 20 19 24 24 C 1.37843 * 120.11759 * 359.97438 * 23 21 20 25 25 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 26 26 F 1.39895 * 109.46931 * 180.02562 * 25 9 7 27 27 F 1.39897 * 109.47129 * 300.00544 * 25 9 7 28 28 F 1.39900 * 109.46764 * 60.00523 * 25 9 7 29 29 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00153 * 334.99428 * 11 9 7 31 31 H 1.08997 * 109.46862 * 299.99840 * 14 12 11 32 32 H 1.08993 * 109.46756 * 60.00116 * 14 12 11 33 33 H 0.97001 * 120.00530 * 0.02562 * 15 14 12 34 34 H 1.07999 * 120.05808 * 359.97438 * 19 18 16 35 35 H 1.08011 * 119.93509 * 180.25782 * 20 19 18 36 36 H 1.07999 * 119.94413 * 179.97438 * 23 21 20 37 37 H 1.07998 * 120.05645 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6126 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7196 -4.9698 0.9382 14 6 2.8162 -5.9578 0.4933 15 7 2.1823 -7.1423 1.0777 16 6 2.8735 -8.2947 1.1810 17 8 4.0231 -8.3512 0.7897 18 6 2.2342 -9.4892 1.7698 19 6 0.9156 -9.4255 2.2254 20 6 0.3222 -10.5445 2.7690 21 6 1.0353 -11.7289 2.8737 22 9 0.4507 -12.8213 3.4121 23 6 2.3467 -11.7961 2.4282 24 6 2.9481 -10.6845 1.8780 25 6 0.3719 -2.5805 -1.2490 26 9 -0.3280 -3.7918 -1.2486 27 9 -0.5372 -1.5172 -1.2495 28 9 1.1765 -2.5066 -2.3910 29 1 -0.4850 0.8400 -0.0004 30 1 3.0970 -3.4865 -0.3546 31 1 3.1199 -6.1757 -0.5306 32 1 3.6924 -5.6871 1.0824 33 1 1.2649 -7.0973 1.3897 34 1 0.3607 -8.5022 2.1484 35 1 -0.6990 -10.4975 3.1178 36 1 2.8979 -12.7210 2.5125 37 1 3.9696 -10.7378 1.5317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:57 Heat of formation + Delta-G solvation = -246.089928 kcal Electronic energy + Delta-G solvation = -30010.137570 eV Core-core repulsion = 24865.917633 eV Total energy + Delta-G solvation = -5144.219937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.41431 -50.02223 -48.05038 -47.72381 -41.49685 -40.54102 -39.09517 -36.68073 -35.61388 -34.51459 -32.36316 -32.04890 -30.79410 -28.35065 -26.57484 -24.75383 -24.02473 -23.38231 -21.68822 -21.63389 -19.93861 -19.09355 -18.88717 -18.67875 -18.55867 -18.11555 -17.63395 -17.25475 -16.96661 -16.76418 -16.63888 -16.47603 -16.20614 -15.67633 -15.44506 -15.03705 -14.96807 -14.72979 -14.54201 -14.45667 -14.31839 -14.26832 -14.17527 -14.01346 -13.89543 -13.77522 -13.75607 -13.19580 -13.03319 -12.74876 -12.65895 -12.22251 -12.08520 -11.58334 -11.26385 -11.04463 -10.69798 -10.38653 -10.23360 -10.12184 -9.82677 -8.22163 -6.52369 -0.42436 0.16352 1.45352 1.47942 1.50786 1.58860 1.63917 1.70954 2.31090 2.42226 2.54185 2.64823 2.94022 3.09810 3.50326 3.60628 3.67922 3.80397 3.83189 3.87193 4.15297 4.19048 4.22561 4.32818 4.34961 4.73099 4.86655 4.87448 5.00220 5.05171 5.14466 5.19414 5.33298 5.52251 5.64379 5.71338 6.34790 6.52050 6.58567 7.01214 7.12846 7.24228 8.70261 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002221 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.311072 B =12603.668737 C =12995.330876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.253 3.747 10 H 0.054 0.946 11 N -0.700 5.700 12 C 0.502 3.498 13 O -0.567 6.567 14 C 0.111 3.889 15 N -0.709 5.709 16 C 0.564 3.436 17 O -0.567 6.567 18 C -0.159 4.159 19 C -0.054 4.054 20 C -0.159 4.159 21 C 0.117 3.883 22 F -0.138 7.138 23 C -0.157 4.157 24 C -0.033 4.033 25 C 0.413 3.587 26 F -0.218 7.218 27 F -0.151 7.151 28 F -0.203 7.203 29 H 0.268 0.732 30 H 0.418 0.582 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.415 0.585 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -17.604 4.067 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.598 4.598 8 H 0.112 0.888 9 C 0.146 3.854 10 H 0.072 0.928 11 N -0.351 5.351 12 C 0.288 3.712 13 O -0.446 6.446 14 C -0.016 4.016 15 N -0.364 5.364 16 C 0.353 3.647 17 O -0.448 6.448 18 C -0.162 4.162 19 C -0.072 4.072 20 C -0.178 4.178 21 C 0.097 3.903 22 F -0.117 7.117 23 C -0.176 4.176 24 C -0.052 4.052 25 C 0.356 3.644 26 F -0.200 7.200 27 F -0.132 7.132 28 F -0.185 7.185 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.254 0.746 34 H 0.167 0.833 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.543 -17.634 4.104 18.667 hybrid contribution -0.442 0.926 -0.347 1.083 sum 4.101 -16.709 3.756 17.610 Atomic orbital electron populations 1.70516 1.07404 1.28155 1.44666 1.25956 0.95863 1.03598 0.93528 0.85201 0.78679 0.77364 0.78358 1.20146 1.20961 1.18031 1.21238 0.94645 0.88298 1.55614 0.88809 1.19359 0.88878 0.87256 0.89949 0.92833 1.45828 1.17518 1.09734 1.61971 1.21040 0.88556 0.84497 0.77061 1.90677 1.22885 1.83273 1.47788 1.21086 0.94827 0.82992 1.02728 1.45644 1.18274 1.09671 1.62790 1.18360 0.85349 0.82930 0.78054 1.90767 1.18304 1.84985 1.50742 1.19924 0.95957 0.94436 1.05924 1.21397 0.93019 0.99170 0.93658 1.21324 1.02399 0.91238 1.02799 1.18172 0.92323 0.83520 0.96284 1.91522 1.84304 1.52521 1.83350 1.21344 0.93675 1.01088 1.01452 1.21232 1.00491 0.89941 0.93526 1.23326 0.80853 0.72436 0.87754 1.93059 1.81581 1.48319 1.97013 1.93380 1.68974 1.54581 1.96310 1.92995 1.74096 1.96149 1.55277 0.92179 0.74485 0.86686 0.86152 0.74583 0.83290 0.82073 0.81695 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.69 9.50 21.45 0.20 -46.49 16 2 C 0.02 0.80 5.20 84.65 0.44 1.24 16 3 Si 0.98 39.15 29.54 68.60 2.03 41.18 16 4 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.56 -26.77 8.46 25.60 0.22 -26.55 16 8 H 0.09 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.25 11.75 2.21 44.25 0.10 11.85 16 10 H 0.05 2.86 7.58 -2.39 -0.02 2.84 16 11 N -0.70 -25.11 4.98 -446.10 -2.22 -27.33 16 12 C 0.50 16.80 7.43 87.66 0.65 17.45 16 13 O -0.57 -22.82 14.24 -3.04 -0.04 -22.86 16 14 C 0.11 2.73 6.15 85.63 0.53 3.26 16 15 N -0.71 -17.14 5.48 -469.83 -2.57 -19.71 16 16 C 0.56 13.81 7.77 86.75 0.67 14.48 16 17 O -0.57 -16.78 16.34 -3.92 -0.06 -16.85 16 18 C -0.16 -3.14 5.87 -20.09 -0.12 -3.26 16 19 C -0.05 -0.89 9.54 22.52 0.21 -0.67 16 20 C -0.16 -2.34 10.01 22.27 0.22 -2.11 16 21 C 0.12 1.81 7.31 22.47 0.16 1.98 16 22 F -0.14 -2.31 17.26 44.97 0.78 -1.53 16 23 C -0.16 -2.20 10.01 22.28 0.22 -1.97 16 24 C -0.03 -0.56 9.59 22.52 0.22 -0.34 16 25 C 0.41 20.18 2.81 71.98 0.20 20.38 16 26 F -0.22 -10.45 15.68 44.97 0.71 -9.75 16 27 F -0.15 -8.19 12.91 44.97 0.58 -7.61 16 28 F -0.20 -9.46 16.94 44.97 0.76 -8.70 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.42 12.30 8.54 -92.70 -0.79 11.51 16 31 H 0.12 2.56 8.14 -2.39 -0.02 2.55 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.41 9.77 5.47 -92.71 -0.51 9.26 16 34 H 0.15 2.18 6.40 -2.91 -0.02 2.16 16 35 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.15 2.42 7.65 -2.91 -0.02 2.39 16 Total: -1.00 -64.09 340.64 3.77 -60.33 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.12 Total: 23.62 kcal Atomic # 6 Polarization: 31.98 SS G_CDS: 3.73 Total: 35.71 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -4.59 Total: -93.54 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.11 Total: -39.71 kcal Atomic # 9 Polarization: -30.42 SS G_CDS: 2.82 Total: -27.59 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -64.09 3.77 -60.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.762 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds