Wall clock time and date at job start Wed Apr 1 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.91705 * 2 1 4 4 C 1.54913 * 111.00618 * 236.09790 * 2 1 3 5 5 N 1.47427 * 104.83040 * 204.91418 * 4 2 1 6 6 C 1.34775 * 125.64532 * 204.09082 * 5 4 2 7 7 O 1.21637 * 120.00475 * 5.24075 * 6 5 4 8 8 C 1.47195 * 119.99881 * 185.24654 * 6 5 4 9 9 C 1.36009 * 123.45788 * 354.00616 * 8 6 5 10 10 S 1.70446 * 110.81356 * 180.02562 * 9 8 6 11 11 C 1.75506 * 92.44546 * 359.83596 * 10 9 8 12 12 C 1.32766 * 110.57724 * 0.29736 * 11 10 9 13 13 C 1.50700 * 123.46036 * 179.97438 * 12 11 10 14 14 F 1.39900 * 109.46807 * 359.69992 * 13 12 11 15 15 F 1.39904 * 109.46916 * 239.70625 * 13 12 11 16 16 F 1.39898 * 109.47062 * 119.69979 * 13 12 11 17 17 C 1.47016 * 108.70397 * 24.35654 * 5 4 2 18 18 C 1.54330 * 107.26819 * 358.58549 * 17 5 4 19 19 H 1.09001 * 110.67475 * 96.51890 * 18 17 5 20 20 N 1.46503 * 110.85348 * 219.67689 * 18 17 5 21 21 C 1.36935 * 119.99646 * 268.69045 * 20 18 17 22 22 H 1.08001 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00262 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99466 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00333 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47194 * 60.00248 * 25 23 21 27 27 H 1.48506 * 109.46953 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46891 * 300.00014 * 25 23 21 29 29 H 1.09000 * 109.47015 * 182.44702 * 1 2 3 30 30 H 1.08996 * 109.47317 * 302.45089 * 1 2 3 31 31 H 1.08997 * 109.47241 * 62.45163 * 1 2 3 32 32 H 1.08998 * 110.36448 * 86.07778 * 4 2 1 33 33 H 1.08995 * 110.45717 * 323.79890 * 4 2 1 34 34 H 1.07997 * 124.59480 * 0.02562 * 9 8 6 35 35 H 1.08005 * 124.71061 * 180.20201 * 11 10 9 36 36 H 1.09001 * 109.88065 * 118.12964 * 17 5 4 37 37 H 1.08997 * 109.88533 * 239.29327 * 17 5 4 38 38 H 0.96998 * 120.00101 * 88.68326 * 20 18 17 39 39 H 0.97003 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7733 6 6 4.4477 -1.5615 -1.5940 7 8 4.3324 -1.4094 -2.7953 8 6 5.7018 -2.0936 -1.0366 9 6 5.9515 -2.1820 0.2975 10 16 7.4968 -2.8426 0.5819 11 6 7.8226 -3.0126 -1.1342 12 6 6.7938 -2.5749 -1.8501 13 6 6.7652 -2.5861 -3.3568 14 9 7.9678 -3.1110 -3.8421 15 9 6.6022 -1.2796 -3.8299 16 9 5.6993 -3.3781 -3.7971 17 6 3.4658 -1.2793 0.6959 18 6 2.0862 -0.8079 1.2022 19 1 1.4451 -1.6614 1.4229 20 7 2.2286 0.0497 2.3815 21 6 2.1999 -0.5001 3.6353 22 1 2.0719 -1.5658 3.7548 23 6 2.3354 0.3123 4.7527 24 7 2.4908 1.6112 4.6070 25 14 2.2970 -0.4378 6.4630 26 1 3.4024 -1.4201 6.5977 27 1 2.4605 0.6344 7.4775 28 1 0.9968 -1.1237 6.6736 29 1 -0.3633 -1.0267 0.0439 30 1 -0.3634 0.5514 0.8672 31 1 -0.3633 0.4753 -0.9111 32 1 2.1560 -0.1720 -2.0836 33 1 1.4525 -1.6704 -1.4042 34 1 5.2638 -1.8752 1.0716 35 1 8.7342 -3.4158 -1.5501 36 1 3.6602 -2.2963 1.0366 37 1 4.2424 -0.6084 1.0631 38 1 2.3433 1.0068 2.2741 39 1 2.5859 2.1789 5.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939883634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:05 Heat of formation + Delta-G solvation = -122.463143 kcal Electronic energy + Delta-G solvation = -29013.563744 eV Core-core repulsion = 24440.917844 eV Total energy + Delta-G solvation = -4572.645901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.98537 -47.56968 -47.34546 -40.26619 -38.07746 -36.95652 -34.22149 -32.85804 -31.03646 -30.42259 -27.83535 -27.13607 -26.13327 -24.67180 -23.61775 -21.75855 -20.70072 -20.11471 -19.73839 -18.36928 -18.29389 -17.65482 -17.27919 -17.22561 -16.15242 -15.94993 -15.11002 -14.92483 -14.44668 -14.32646 -14.20170 -13.90782 -13.80397 -13.67455 -13.61283 -13.55179 -13.39278 -13.29350 -13.17738 -12.93134 -12.62004 -12.39056 -12.27553 -12.00277 -11.60345 -11.35195 -11.21616 -11.04136 -10.71873 -10.68887 -10.37088 -10.10719 -9.93029 -9.77500 -9.50958 -9.08939 -8.85383 -8.42266 -7.20964 -5.95144 -3.27005 0.46055 1.07738 1.37295 1.50363 2.81039 3.04333 3.28013 3.31881 3.37542 3.38735 3.86710 4.11363 4.39998 4.48790 4.53386 4.67518 4.91272 5.03110 5.10919 5.15194 5.22589 5.45744 5.50682 5.57227 5.60770 5.66558 5.77972 5.78640 5.93372 6.07777 6.11748 6.25418 6.36401 6.45237 6.54659 6.74891 7.52040 7.63875 8.20965 8.24072 9.33956 9.86779 10.21836 11.26270 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.003436 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.399196 B = 8146.990511 C = 9762.815337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.583 3.417 7 O -0.534 6.534 8 C -0.125 4.125 9 C -0.222 4.222 10 S 0.240 5.760 11 C -0.190 4.190 12 C -0.154 4.154 13 C 0.536 3.464 14 F -0.186 7.186 15 F -0.162 7.162 16 F -0.167 7.167 17 C 0.060 3.940 18 C 0.177 3.823 19 H 0.071 0.929 20 N -0.710 5.710 21 C -0.255 4.255 22 H 0.072 0.928 23 C -0.004 4.004 24 N -0.927 5.927 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.208 0.792 35 H 0.182 0.818 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.388 0.612 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -9.144 -11.030 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.335 5.335 6 C 0.370 3.630 7 O -0.413 6.413 8 C -0.140 4.140 9 C -0.359 4.359 10 S 0.508 5.492 11 C -0.327 4.327 12 C -0.169 4.169 13 C 0.479 3.521 14 F -0.167 7.167 15 F -0.143 7.143 16 F -0.148 7.148 17 C -0.066 4.066 18 C 0.064 3.936 19 H 0.089 0.911 20 N -0.349 5.349 21 C -0.386 4.386 22 H 0.090 0.910 23 C -0.202 4.202 24 N -0.574 5.574 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.225 0.775 35 H 0.200 0.800 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.222 0.778 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.093 -9.480 -10.212 16.638 hybrid contribution -0.649 0.276 -0.417 0.819 sum 8.444 -9.204 -10.629 16.401 Atomic orbital electron populations 1.21590 0.93687 1.01872 1.01849 1.22669 0.96488 0.99845 0.94454 0.89734 1.22307 0.81984 0.98341 0.98077 1.48241 1.12060 1.65489 1.07714 1.17126 0.81940 0.78303 0.85633 1.90833 1.81832 1.54617 1.13994 1.19759 0.95905 1.06613 0.91752 1.27052 1.03582 1.04275 1.00978 1.83279 1.08369 1.55843 1.01665 1.25553 1.02910 1.05493 0.98706 1.19903 0.96246 1.07904 0.92803 1.17449 0.73269 0.74594 0.86753 1.93146 1.46785 1.86983 1.89792 1.93246 1.95092 1.36300 1.89684 1.93220 1.56641 1.74196 1.90771 1.23751 1.03864 1.00910 0.78117 1.21285 0.91247 0.94016 0.87035 0.91069 1.42369 1.86232 1.06265 1.00066 1.19197 1.43587 0.92601 0.83165 0.90970 1.24770 1.01998 0.95403 0.97994 1.69650 1.55412 1.02866 1.29430 0.86282 0.77961 0.77878 0.84102 1.21124 1.21603 1.21082 0.92764 0.91367 0.93108 0.90538 0.91349 0.77548 0.80030 0.91615 0.90239 0.77780 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.29 37.16 0.35 -1.43 16 2 C -0.11 -1.71 3.27 -88.47 -0.29 -2.00 16 3 H 0.08 1.35 8.01 -51.93 -0.42 0.94 16 4 C 0.12 1.67 6.40 -2.53 -0.02 1.66 16 5 N -0.60 -9.49 3.33 -171.87 -0.57 -10.06 16 6 C 0.58 9.87 7.80 -12.62 -0.10 9.77 16 7 O -0.53 -10.27 13.26 5.24 0.07 -10.20 16 8 C -0.12 -1.82 5.97 -104.63 -0.63 -2.45 16 9 C -0.22 -2.77 9.42 29.93 0.28 -2.49 16 10 S 0.24 2.25 23.02 -107.50 -2.48 -0.22 16 11 C -0.19 -1.92 10.45 28.86 0.30 -1.62 16 12 C -0.15 -2.06 5.44 -104.06 -0.57 -2.63 16 13 C 0.54 7.76 2.79 36.01 0.10 7.86 16 14 F -0.19 -2.31 16.42 2.25 0.04 -2.27 16 15 F -0.16 -2.65 15.58 2.25 0.04 -2.62 16 16 F -0.17 -2.66 16.00 2.25 0.04 -2.62 16 17 C 0.06 0.93 4.69 -3.06 -0.01 0.92 16 18 C 0.18 3.04 3.08 -66.09 -0.20 2.84 16 19 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 20 N -0.71 -15.56 5.15 -51.64 -0.27 -15.83 16 21 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 24 N -0.93 -25.87 13.06 55.49 0.72 -25.14 16 25 Si 0.91 20.64 29.55 -169.99 -5.02 15.61 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.12 7.99 -51.93 -0.41 0.71 16 33 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.21 2.65 3.71 -52.49 -0.19 2.46 16 35 H 0.18 1.32 7.65 -52.48 -0.40 0.92 16 36 H 0.07 0.95 6.82 -51.93 -0.35 0.60 16 37 H 0.08 1.33 6.73 -51.93 -0.35 0.98 16 38 H 0.39 9.25 7.76 -40.82 -0.32 8.93 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -29.41 345.95 -7.34 -36.75 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.09 Total: 7.60 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.03 Total: 3.79 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.11 Total: -51.03 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.11 Total: -7.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.48 Total: -0.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.41 -7.34 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939883634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.713 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds