Wall clock time and date at job start Wed Apr 1 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.99872 * 2 1 4 4 C 1.54324 * 109.88425 * 238.90202 * 2 1 3 5 5 H 1.08997 * 110.71818 * 336.93252 * 4 2 1 6 6 N 1.46503 * 110.71937 * 100.02723 * 4 2 1 7 7 C 1.36935 * 120.00124 * 202.55861 * 6 4 2 8 8 H 1.07998 * 119.99289 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00181 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00128 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00228 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47220 * 270.00456 * 11 9 7 13 13 H 1.48499 * 109.46743 * 30.00282 * 11 9 7 14 14 H 1.48499 * 109.46969 * 149.99968 * 11 9 7 15 15 C 1.55155 * 103.09991 * 218.47671 * 4 2 1 16 16 C 1.54907 * 101.58311 * 35.41566 * 15 4 2 17 17 N 1.47317 * 110.06352 * 121.16969 * 2 1 3 18 18 C 1.34778 * 125.61290 * 298.24998 * 17 2 1 19 19 O 1.21635 * 120.00507 * 353.60635 * 18 17 2 20 20 C 1.47188 * 119.99837 * 173.61145 * 18 17 2 21 21 C 1.36013 * 123.46483 * 172.15616 * 20 18 17 22 22 S 1.70448 * 110.82240 * 179.97438 * 21 20 18 23 23 C 1.75503 * 92.44202 * 0.02562 * 22 21 20 24 24 C 1.50706 * 124.71056 * 180.02562 * 23 22 21 25 25 F 1.39899 * 109.46778 * 269.97352 * 24 23 22 26 26 F 1.39899 * 109.47272 * 29.97243 * 24 23 22 27 27 F 1.39897 * 109.46963 * 149.97469 * 24 23 22 28 28 C 1.32772 * 110.57841 * 359.73323 * 23 22 21 29 29 H 1.08996 * 109.47503 * 181.09297 * 1 2 3 30 30 H 1.08997 * 109.47434 * 301.10037 * 1 2 3 31 31 H 1.09011 * 109.47025 * 61.09573 * 1 2 3 32 32 H 0.97006 * 119.99738 * 22.56027 * 6 4 2 33 33 H 0.96997 * 120.00362 * 179.97438 * 10 9 7 34 34 H 1.08999 * 111.00086 * 153.48622 * 15 4 2 35 35 H 1.09003 * 111.00684 * 277.30201 * 15 4 2 36 36 H 1.09002 * 110.36598 * 81.82573 * 16 15 4 37 37 H 1.09000 * 110.36905 * 204.14960 * 16 15 4 38 38 H 1.08004 * 124.58631 * 359.93969 * 21 20 18 39 39 H 1.07996 * 123.46026 * 180.24560 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3040 -1.4437 -1.6200 6 7 2.4555 0.1960 -2.2875 7 6 2.5064 -0.2090 -3.5946 8 1 2.2516 -1.2256 -3.8551 9 6 2.8866 0.6868 -4.5845 10 7 3.1986 1.9253 -4.2667 11 14 2.9567 0.1341 -6.3675 12 1 4.3122 -0.3917 -6.6698 13 1 1.9497 -0.9333 -6.5947 14 1 2.6640 1.2880 -7.2552 15 6 3.2870 -1.5177 -0.6956 16 6 2.8161 -1.8830 0.7342 17 7 2.0354 -0.7162 1.1840 18 6 1.8175 -0.3640 2.4666 19 8 1.2532 0.6828 2.7224 20 6 2.2624 -1.2460 3.5577 21 6 2.2197 -0.8945 4.8709 22 16 2.8104 -2.1547 5.8549 23 6 3.1270 -3.1875 4.4717 24 6 3.7014 -4.5784 4.5529 25 9 5.0971 -4.5111 4.4846 26 9 3.3217 -5.1699 5.7625 27 9 3.2188 -5.3452 3.4870 28 6 2.7842 -2.5757 3.3443 29 1 -0.3634 -1.0274 0.0196 30 1 -0.3634 0.5308 0.8799 31 1 -0.3634 0.4968 -0.8997 32 1 2.6848 1.1091 -2.0533 33 1 3.4645 2.5512 -4.9584 34 1 3.4811 -2.4144 -1.2841 35 1 4.1666 -0.8746 -0.6656 36 1 2.1880 -2.7736 0.7108 37 1 3.6742 -2.0401 1.3877 38 1 1.8607 0.0549 5.2401 39 1 2.8879 -3.0250 2.3678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986482582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:37 Heat of formation + Delta-G solvation = -139.979495 kcal Electronic energy + Delta-G solvation = -28359.929396 eV Core-core repulsion = 23786.523929 eV Total energy + Delta-G solvation = -4573.405467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.23334 -48.76538 -48.71378 -41.56396 -39.16875 -38.15597 -35.94169 -33.42323 -32.40182 -32.18741 -30.81624 -27.48623 -26.79555 -26.13221 -24.79583 -23.65271 -21.87452 -21.48645 -20.58651 -19.77014 -19.58359 -19.19295 -18.98879 -17.98727 -17.37225 -17.10411 -16.51813 -16.31276 -15.69065 -15.65187 -15.53668 -15.49004 -15.14998 -14.96012 -14.88177 -14.86549 -14.75310 -14.44987 -14.17678 -14.07379 -13.87164 -13.63131 -13.38474 -13.29093 -13.05031 -12.89214 -12.70083 -12.50873 -12.17124 -12.13862 -12.08851 -11.70342 -11.54169 -11.11208 -10.89612 -10.52649 -9.81288 -9.59216 -9.02190 -7.93210 -5.23254 -0.62845 0.04758 0.49719 0.50777 1.50423 1.51323 1.51685 1.59982 1.90191 2.12191 2.54955 2.58431 3.06213 3.25588 3.36041 3.47238 3.66160 3.71933 3.78958 3.95162 4.11336 4.16030 4.29871 4.36533 4.37316 4.48742 4.59191 4.64235 4.69590 4.78660 4.87940 5.02393 5.19741 5.22108 5.30316 5.44012 5.55860 6.26921 6.45168 7.00596 7.33670 8.05394 8.29002 9.30290 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002672 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.533462 B =10477.174975 C =11592.891011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 H 0.048 0.952 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.729 5.729 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.288 1.288 13 H -0.266 1.266 14 H -0.301 1.301 15 C -0.149 4.149 16 C 0.092 3.908 17 N -0.602 5.602 18 C 0.588 3.412 19 O -0.578 6.578 20 C -0.183 4.183 21 C -0.161 4.161 22 S 0.341 5.659 23 C -0.344 4.344 24 C 0.549 3.451 25 F -0.172 7.172 26 F -0.172 7.172 27 F -0.169 7.169 28 C -0.048 4.048 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.194 0.806 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -15.408 23.737 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.066 0.934 4 C 0.061 3.939 5 H 0.093 0.907 6 N -0.368 5.368 7 C -0.368 4.368 8 H 0.103 0.897 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.215 1.215 13 H -0.191 1.191 14 H -0.228 1.228 15 C -0.190 4.190 16 C -0.029 4.029 17 N -0.334 5.334 18 C 0.377 3.623 19 O -0.460 6.460 20 C -0.200 4.200 21 C -0.300 4.300 22 S 0.609 5.391 23 C -0.462 4.462 24 C 0.493 3.507 25 F -0.154 7.154 26 F -0.153 7.153 27 F -0.150 7.150 28 C -0.079 4.079 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.203 0.797 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.211 0.789 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.314 -15.179 25.355 29.553 hybrid contribution 0.116 0.841 -2.779 2.906 sum -0.199 -14.338 22.576 26.745 Atomic orbital electron populations 1.21927 0.93868 1.02612 1.01773 1.21733 0.94990 0.95562 0.84815 0.93428 1.21443 0.94965 0.91076 0.86399 0.90696 1.42522 1.80599 1.10690 1.02963 1.19627 1.36621 0.96216 0.84302 0.89749 1.25564 1.03081 0.95952 1.02140 1.69830 1.54064 1.05072 1.33221 0.85152 0.77865 0.76749 0.80054 1.21486 1.19052 1.22823 1.23436 0.99164 1.01559 0.94805 1.22993 0.95828 0.88432 0.95696 1.48454 1.51841 1.28878 1.04266 1.17533 0.78630 0.84776 0.81333 1.90771 1.45599 1.25870 1.83760 1.19915 1.11025 0.95613 0.93402 1.26187 1.00622 1.06293 0.96944 1.82953 1.53934 0.99531 1.02639 1.24710 1.18975 1.00456 1.02038 1.17095 0.75707 0.83919 0.73977 1.93258 1.29602 1.96521 1.95978 1.93227 1.91052 1.85630 1.45421 1.93233 1.87915 1.77284 1.56611 1.21991 0.93322 0.92052 1.00501 0.90975 0.92991 0.92003 0.79713 0.94142 0.88787 0.92525 0.88042 0.88301 0.78925 0.79759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.11 71.98 0.66 -3.98 16 2 C 0.13 4.62 3.19 45.28 0.14 4.77 16 3 H 0.05 1.96 7.70 -2.38 -0.02 1.95 16 4 C 0.17 6.21 3.12 46.18 0.14 6.36 16 5 H 0.08 2.63 7.81 -2.39 -0.02 2.61 16 6 N -0.73 -35.08 5.24 -317.33 -1.66 -36.74 16 7 C -0.24 -12.40 9.97 84.03 0.84 -11.56 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 11 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 15 C -0.15 -4.42 6.77 31.98 0.22 -4.21 16 16 C 0.09 2.07 4.97 86.86 0.43 2.50 16 17 N -0.60 -17.49 3.08 -791.46 -2.43 -19.92 16 18 C 0.59 17.53 7.56 86.59 0.65 18.19 16 19 O -0.58 -21.37 16.07 -4.14 -0.07 -21.44 16 20 C -0.18 -3.96 5.92 -19.87 -0.12 -4.07 16 21 C -0.16 -2.72 10.53 67.30 0.71 -2.01 16 22 S 0.34 3.99 22.69 -56.49 -1.28 2.71 16 23 C -0.34 -5.23 5.90 24.51 0.14 -5.08 16 24 C 0.55 8.38 3.51 71.24 0.25 8.63 16 25 F -0.17 -2.85 17.30 44.97 0.78 -2.07 16 26 F -0.17 -2.55 17.02 44.97 0.77 -1.79 16 27 F -0.17 -2.74 16.90 44.97 0.76 -1.98 16 28 C -0.05 -0.82 8.13 22.67 0.18 -0.64 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.75 7.15 -2.39 -0.02 1.73 16 31 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.37 19.89 7.53 -92.70 -0.70 19.19 16 33 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 1.73 7.48 -2.39 -0.02 1.71 16 37 H 0.10 1.83 5.95 -2.39 -0.01 1.82 16 38 H 0.19 2.99 8.03 -2.91 -0.02 2.97 16 39 H 0.19 2.75 4.18 -2.91 -0.01 2.74 16 Total: -1.00 -67.31 350.97 4.32 -62.99 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.43 Total: 24.69 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 4.72 Total: 5.18 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -3.81 Total: -115.15 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.07 Total: -21.44 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 2.30 Total: -5.83 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.28 Total: 2.71 kcal Total: -67.31 4.32 -62.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986482582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.994 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds