Wall clock time and date at job start Wed Apr 1 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.87107 * 2 1 4 4 C 1.54322 * 109.88139 * 238.98598 * 2 1 3 5 5 C 1.55162 * 102.93997 * 218.23486 * 4 2 1 6 6 H 1.09002 * 111.00247 * 153.60879 * 5 4 2 7 7 N 1.46498 * 111.00628 * 277.42716 * 5 4 2 8 8 C 1.36932 * 120.00149 * 205.00039 * 7 5 4 9 9 H 1.08004 * 119.99672 * 0.02562 * 8 7 5 10 10 C 1.38808 * 119.99901 * 180.27381 * 8 7 5 11 11 N 1.31615 * 120.00156 * 359.72326 * 10 8 7 12 12 Si 1.86804 * 119.99991 * 179.72415 * 10 8 7 13 13 H 1.48503 * 109.47007 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47227 * 119.99747 * 12 10 8 15 15 H 1.48497 * 109.47365 * 239.99878 * 12 10 8 16 16 C 1.54916 * 101.58023 * 35.50160 * 5 4 2 17 17 N 1.47022 * 110.01092 * 121.09403 * 2 1 3 18 18 C 1.34777 * 125.65057 * 298.47921 * 17 2 1 19 19 O 1.21699 * 119.99715 * 354.37618 * 18 17 2 20 20 C 1.46583 * 119.99803 * 174.37299 * 18 17 2 21 21 C 1.36641 * 125.45605 * 173.76830 * 20 18 17 22 22 C 1.37478 * 113.29808 * 179.80410 * 21 20 18 23 23 C 1.33818 * 115.09735 * 0.49521 * 22 21 20 24 24 C 1.50699 * 124.52073 * 179.71149 * 23 22 21 25 25 F 1.39897 * 109.47472 * 89.99526 * 24 23 22 26 26 F 1.39900 * 109.46716 * 209.99679 * 24 23 22 27 27 F 1.39903 * 109.46843 * 329.98965 * 24 23 22 28 28 S 1.70612 * 110.95629 * 359.72534 * 23 22 21 29 29 H 1.08997 * 109.46883 * 181.01405 * 1 2 3 30 30 H 1.09004 * 109.47106 * 301.01683 * 1 2 3 31 31 H 1.09003 * 109.46929 * 61.01553 * 1 2 3 32 32 H 1.08994 * 110.72229 * 99.87546 * 4 2 1 33 33 H 1.09003 * 110.71773 * 336.59431 * 4 2 1 34 34 H 0.97000 * 119.99570 * 24.99998 * 7 5 4 35 35 H 0.97000 * 120.00260 * 180.02562 * 11 10 8 36 36 H 1.08997 * 110.36468 * 81.82959 * 16 5 4 37 37 H 1.09003 * 110.36443 * 204.15187 * 16 5 4 38 38 H 1.08004 * 123.35452 * 0.02562 * 21 20 18 39 39 H 1.07997 * 122.44902 * 180.20131 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2900 -1.5101 -0.6954 6 1 3.4891 -2.4058 -1.2837 7 7 4.4680 -0.6401 -0.6535 8 6 5.7234 -1.1846 -0.7047 9 1 5.8451 -2.2553 -0.7764 10 6 6.8396 -0.3606 -0.6592 11 7 6.6912 0.9442 -0.5724 12 14 8.5523 -1.1039 -0.7213 13 1 8.4472 -2.5821 -0.8169 14 1 9.2762 -0.5808 -1.9077 15 1 9.2950 -0.7396 0.5120 16 6 2.8195 -1.8769 0.7343 17 7 2.0332 -0.7134 1.1830 18 6 1.8113 -0.3626 2.4652 19 8 1.2308 0.6763 2.7200 20 6 2.2690 -1.2323 3.5527 21 6 2.2124 -0.9325 4.8846 22 6 2.7073 -1.9320 5.6885 23 6 3.1636 -3.0093 5.0388 24 6 3.7558 -4.2228 5.7079 25 9 2.7411 -5.1461 5.9818 26 9 4.7020 -4.8078 4.8596 27 9 4.3741 -3.8410 6.9033 28 16 2.9860 -2.8253 3.3520 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8808 31 1 -0.3633 0.4980 -0.8990 32 1 2.3504 -0.0432 -2.0211 33 1 1.3061 -1.4456 -1.6186 34 1 4.3586 0.3216 -0.5895 35 1 7.4712 1.5200 -0.5410 36 1 2.1956 -2.7703 0.7107 37 1 3.6779 -2.0298 1.3885 38 1 1.8150 -0.0043 5.2681 39 1 2.7306 -1.8516 6.7652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989848303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:56 Heat of formation + Delta-G solvation = -132.206956 kcal Electronic energy + Delta-G solvation = -28749.448600 eV Core-core repulsion = 24176.380176 eV Total energy + Delta-G solvation = -4573.068424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.33850 -47.85376 -47.82812 -40.09722 -38.33468 -37.09995 -34.11065 -32.25213 -31.45941 -30.66415 -28.60078 -26.83845 -25.70146 -24.03425 -23.73356 -22.61084 -20.77681 -19.84292 -19.77626 -18.70302 -18.67433 -17.71042 -17.35031 -17.12992 -16.11287 -15.93617 -15.12874 -14.82004 -14.70590 -14.67518 -14.25996 -14.20987 -14.11651 -13.97293 -13.96374 -13.69857 -13.47404 -13.30008 -12.96142 -12.82129 -12.61290 -12.42654 -12.30739 -12.06735 -11.82379 -11.36455 -11.25505 -10.98399 -10.79681 -10.65531 -10.39466 -10.09325 -9.90330 -9.82080 -9.27802 -9.15530 -8.76010 -8.40347 -7.15710 -5.90946 -3.22511 0.10363 1.08941 1.56986 2.07758 2.46293 3.03472 3.25138 3.35567 3.41509 3.44002 3.49460 3.97932 4.15633 4.45084 4.49735 4.94622 4.96685 5.01868 5.14923 5.19844 5.34872 5.48057 5.54684 5.60217 5.62903 5.74601 5.75122 5.85542 5.99624 6.02362 6.07635 6.28411 6.28855 6.41709 6.56759 6.60506 7.57094 7.65016 8.21498 8.25564 9.38085 9.90885 10.25331 11.30629 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.004546 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.082750 B = 6157.330969 C = 8316.283586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.139 4.139 5 C 0.176 3.824 6 H 0.080 0.920 7 N -0.709 5.709 8 C -0.253 4.253 9 H 0.075 0.925 10 C -0.005 4.005 11 N -0.925 5.925 12 Si 0.906 3.094 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.049 3.951 17 N -0.592 5.592 18 C 0.600 3.400 19 O -0.532 6.532 20 C -0.224 4.224 21 C -0.077 4.077 22 C -0.077 4.077 23 C -0.360 4.360 24 C 0.544 3.456 25 F -0.173 7.173 26 F -0.171 7.171 27 F -0.171 7.171 28 S 0.321 5.679 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.162 0.838 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.700 -9.195 8.233 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.097 0.903 4 C -0.178 4.178 5 C 0.062 3.938 6 H 0.098 0.902 7 N -0.348 5.348 8 C -0.384 4.384 9 H 0.093 0.907 10 C -0.202 4.202 11 N -0.572 5.572 12 Si 0.736 3.264 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.079 4.079 17 N -0.324 5.324 18 C 0.388 3.612 19 O -0.411 6.411 20 C -0.346 4.346 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.479 4.479 24 C 0.488 3.512 25 F -0.154 7.154 26 F -0.152 7.152 27 F -0.152 7.152 28 S 0.594 5.406 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.180 0.820 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.449 -9.696 7.166 16.626 hybrid contribution 0.897 0.645 1.706 2.033 sum -10.552 -9.051 8.872 16.491 Atomic orbital electron populations 1.22136 0.95079 1.01931 1.02652 1.21540 0.93692 0.96980 0.84121 0.90276 1.23116 0.98163 1.00151 0.96347 1.21278 0.87230 0.94756 0.90531 0.90182 1.42377 1.00115 1.05550 1.86791 1.19275 0.83011 0.92172 1.43928 0.90731 1.24779 0.98053 0.95332 1.02055 1.69671 1.29205 1.02165 1.56170 0.86153 0.84615 0.78280 0.77320 1.20314 1.21694 1.21743 1.23751 0.94576 0.87302 1.02248 1.48284 1.50922 1.28855 1.04375 1.16423 0.79654 0.84557 0.80597 1.90807 1.43476 1.23785 1.83077 1.25076 1.10447 1.00512 0.98538 1.20638 0.99461 1.00519 0.90321 1.19836 0.97830 0.91340 1.02085 1.24884 1.16864 1.01249 1.04950 1.17202 0.75812 0.81753 0.76416 1.93230 1.60017 1.68244 1.93932 1.93245 1.65816 1.85599 1.70571 1.93208 1.83353 1.91123 1.47518 1.83841 1.51460 1.09943 0.95353 0.92690 0.91703 0.91573 0.89348 0.90460 0.77882 0.93292 0.91713 0.89670 0.82031 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.11 37.16 0.34 -1.69 16 2 C 0.14 2.10 3.42 -66.95 -0.23 1.87 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.14 -1.93 6.07 -24.89 -0.15 -2.08 16 5 C 0.18 2.97 3.72 -65.78 -0.24 2.73 16 6 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.71 -16.05 5.23 -51.35 -0.27 -16.32 16 8 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 11 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 12 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C 0.05 0.76 4.97 -2.52 -0.01 0.75 16 17 N -0.59 -9.63 3.07 -164.57 -0.51 -10.14 16 18 C 0.60 10.39 7.56 -12.90 -0.10 10.29 16 19 O -0.53 -10.40 16.12 5.19 0.08 -10.32 16 20 C -0.22 -3.35 6.34 -36.80 -0.23 -3.58 16 21 C -0.08 -1.00 10.02 -40.44 -0.41 -1.41 16 22 C -0.08 -0.89 9.64 -41.41 -0.40 -1.29 16 23 C -0.36 -4.51 5.75 -35.86 -0.21 -4.71 16 24 C 0.54 6.58 3.50 36.01 0.13 6.70 16 25 F -0.17 -2.02 17.30 2.25 0.04 -1.98 16 26 F -0.17 -2.21 16.97 2.25 0.04 -2.17 16 27 F -0.17 -2.04 16.88 2.25 0.04 -2.01 16 28 S 0.32 4.23 18.26 -107.50 -1.96 2.27 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.93 7.10 -51.93 -0.37 0.56 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.39 9.65 7.86 -40.82 -0.32 9.33 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 0.81 7.95 -51.93 -0.41 0.40 16 37 H 0.09 1.46 5.75 -38.85 -0.22 1.24 16 38 H 0.16 1.93 8.06 -52.48 -0.42 1.50 16 39 H 0.15 1.38 7.96 -52.49 -0.42 0.96 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -29.92 352.63 -7.51 -37.43 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.23 Total: 6.90 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.76 Total: 0.76 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.05 Total: -52.58 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.12 Total: -6.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.96 Total: 2.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.92 -7.51 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989848303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.773 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds