Wall clock time and date at job start Wed Apr 1 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99735 * 2 1 4 4 H 1.48500 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99767 * 3 2 1 6 6 H 1.48498 * 109.47429 * 59.99796 * 3 2 1 7 7 C 1.38809 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00119 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.46043 * 204.99608 * 10 9 7 12 12 C 1.53196 * 109.31402 * 178.62429 * 11 10 9 13 13 N 1.46921 * 108.77601 * 54.63357 * 12 11 10 14 14 C 1.34775 * 120.63307 * 126.36982 * 13 12 11 15 15 O 1.21698 * 120.00173 * 186.38310 * 14 13 12 16 16 C 1.46585 * 119.99955 * 6.10659 * 14 13 12 17 17 C 1.36643 * 125.45991 * 210.73668 * 16 14 13 18 18 C 1.37466 * 113.29864 * 179.83893 * 17 16 14 19 19 C 1.33815 * 115.10069 * 0.45153 * 18 17 16 20 20 C 1.50699 * 124.52474 * 179.72572 * 19 18 17 21 21 F 1.39905 * 109.46888 * 90.00251 * 20 19 18 22 22 F 1.39899 * 109.47406 * 210.00285 * 20 19 18 23 23 F 1.39901 * 109.47311 * 330.00736 * 20 19 18 24 24 S 1.70612 * 110.95577 * 359.75069 * 19 18 17 25 25 C 1.46934 * 118.73916 * 306.64490 * 13 12 11 26 26 C 1.52758 * 109.00660 * 53.30492 * 25 13 12 27 27 H 0.96998 * 120.00194 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00221 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.45853 * 324.96799 * 10 9 7 30 30 H 1.08999 * 109.50094 * 58.67676 * 11 10 9 31 31 H 1.08997 * 109.50074 * 298.57375 * 11 10 9 32 32 H 1.09003 * 109.58909 * 294.84656 * 12 11 10 33 33 H 1.08996 * 109.70597 * 174.49184 * 12 11 10 34 34 H 1.08006 * 123.34787 * 0.02562 * 17 16 14 35 35 H 1.08008 * 122.45339 * 180.20547 * 18 17 16 36 36 H 1.09003 * 109.58838 * 173.14603 * 25 13 12 37 37 H 1.09001 * 109.58433 * 293.57088 * 25 13 12 38 38 H 1.08995 * 109.56295 * 185.54893 * 26 25 13 39 39 H 1.09005 * 109.35769 * 65.50433 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.1810 -4.7524 -0.6082 12 6 1.9625 -6.0697 -0.6369 13 7 2.4408 -6.3654 0.7204 14 6 2.1716 -7.5520 1.3001 15 8 2.4713 -7.7425 2.4642 16 6 1.5123 -8.6110 0.5304 17 6 0.6757 -9.5612 1.0446 18 6 0.1935 -10.4317 0.0962 19 6 0.6264 -10.2099 -1.1504 20 6 0.2382 -11.0365 -2.3491 21 9 -0.9111 -10.4959 -2.9359 22 9 1.2837 -11.0297 -3.2787 23 9 -0.0185 -12.3512 -1.9457 24 16 1.6772 -8.8667 -1.2015 25 6 3.2131 -5.3407 1.4362 26 6 2.4224 -4.0337 1.4395 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.9690 -3.5507 -0.5877 30 1 0.9028 -4.4724 -1.6242 31 1 0.2815 -4.8761 -0.0052 32 1 2.8133 -5.9753 -1.3117 33 1 1.3126 -6.8752 -0.9789 34 1 0.4167 -9.6204 2.0914 35 1 -0.4823 -11.2382 0.3400 36 1 3.3862 -5.6641 2.4627 37 1 4.1680 -5.1855 0.9339 38 1 3.0277 -3.2421 1.8810 39 1 1.5112 -4.1641 2.0233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997404580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:58 Heat of formation + Delta-G solvation = -131.520974 kcal Electronic energy + Delta-G solvation = -27956.517602 eV Core-core repulsion = 23383.478924 eV Total energy + Delta-G solvation = -4573.038678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.58025 -48.11666 -48.04665 -40.35836 -38.43380 -37.33435 -34.65415 -32.34239 -31.68149 -30.74656 -29.41559 -27.16386 -25.05734 -24.11123 -23.18414 -22.85916 -21.43652 -20.20433 -19.83483 -18.96856 -18.92667 -18.10505 -17.50262 -17.09684 -16.33203 -15.97395 -15.42303 -15.00328 -14.96159 -14.90855 -14.62215 -14.48886 -14.21539 -14.21030 -14.05651 -13.75578 -13.66414 -13.59068 -13.48268 -13.00698 -12.97591 -12.66781 -12.48375 -12.21889 -11.65629 -11.41056 -11.05112 -10.97336 -10.87887 -10.53351 -10.34797 -10.20715 -9.93620 -9.76554 -9.58405 -8.99760 -8.90051 -8.72053 -7.04501 -5.83367 -3.13043 -0.20480 0.68938 1.17154 1.80913 2.19402 2.65845 2.93955 3.22946 3.38947 3.44730 3.46978 3.71664 3.90613 4.16653 4.51947 4.66805 4.73585 4.85271 5.06138 5.19722 5.29674 5.30980 5.38687 5.50055 5.53576 5.67849 5.71571 5.76324 5.82933 6.07816 6.14615 6.33679 6.42816 6.45456 6.79531 6.95242 7.20372 7.63768 7.88710 8.34576 9.46197 10.02222 10.36773 11.39105 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002457 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.889510 B =11393.475933 C =12252.675136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.137 4.137 12 C 0.097 3.903 13 N -0.598 5.598 14 C 0.585 3.415 15 O -0.525 6.525 16 C -0.229 4.229 17 C -0.073 4.073 18 C -0.072 4.072 19 C -0.351 4.351 20 C 0.544 3.456 21 F -0.169 7.169 22 F -0.173 7.173 23 F -0.169 7.169 24 S 0.309 5.691 25 C 0.114 3.886 26 C -0.152 4.152 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -24.147 -3.893 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.176 4.176 12 C -0.028 4.028 13 N -0.330 5.330 14 C 0.371 3.629 15 O -0.403 6.403 16 C -0.351 4.351 17 C -0.105 4.105 18 C -0.106 4.106 19 C -0.471 4.471 20 C 0.488 3.512 21 F -0.150 7.150 22 F -0.154 7.154 23 F -0.151 7.151 24 S 0.581 5.419 25 C -0.008 4.008 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.025 -23.370 -4.529 23.996 hybrid contribution -0.951 0.012 0.916 1.321 sum 2.074 -23.358 -3.613 23.727 Atomic orbital electron populations 1.69671 1.05135 1.25649 1.57495 1.24757 0.95511 0.97757 1.02836 0.86134 0.78793 0.84125 0.77216 1.20522 1.21852 1.21855 1.19262 0.91012 0.84001 1.42906 0.91059 1.42419 1.05811 0.99645 1.88504 1.20163 0.94389 0.86008 0.92575 1.22189 0.99231 0.93384 1.02775 1.22198 0.99204 0.98661 0.82715 1.48073 1.53623 1.14362 1.16983 1.16909 0.78747 0.81254 0.85957 1.90843 1.53165 1.80822 1.15475 1.25106 1.08047 1.03963 0.98002 1.20686 0.95801 0.92378 1.01683 1.19908 1.00199 1.00573 0.89933 1.24705 1.14811 1.09006 0.98529 1.17180 0.74924 0.77697 0.81394 1.93265 1.50674 1.85749 1.85291 1.93232 1.57814 1.96395 1.67967 1.93217 1.94062 1.37310 1.90468 1.83515 1.40111 1.16336 1.01960 1.21728 0.93782 0.87500 0.97752 1.22621 1.00363 0.94734 1.01558 0.93495 0.78228 0.93198 0.89967 0.91450 0.90243 0.90412 0.81889 0.82681 0.89265 0.91218 0.90304 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.05 5.12 -53.39 -0.27 -17.32 16 10 C 0.18 3.20 2.73 -67.90 -0.19 3.02 16 11 C -0.14 -1.98 5.55 -26.61 -0.15 -2.13 16 12 C 0.10 1.11 5.54 -3.71 -0.02 1.09 16 13 N -0.60 -7.82 2.98 -174.60 -0.52 -8.34 16 14 C 0.59 8.02 7.58 -12.90 -0.10 7.92 16 15 O -0.52 -8.74 16.40 5.19 0.09 -8.66 16 16 C -0.23 -2.52 5.73 -36.79 -0.21 -2.73 16 17 C -0.07 -0.69 10.14 -40.44 -0.41 -1.10 16 18 C -0.07 -0.59 9.63 -41.42 -0.40 -0.99 16 19 C -0.35 -3.12 5.75 -35.86 -0.21 -3.33 16 20 C 0.54 4.86 3.50 36.01 0.13 4.99 16 21 F -0.17 -1.61 17.30 2.25 0.04 -1.57 16 22 F -0.17 -1.58 16.97 2.25 0.04 -1.55 16 23 F -0.17 -1.50 16.88 2.25 0.04 -1.46 16 24 S 0.31 2.75 18.93 -107.50 -2.03 0.71 16 25 C 0.11 1.57 6.41 -3.93 -0.03 1.55 16 26 C -0.15 -2.52 5.64 -26.84 -0.15 -2.67 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 29 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.78 3.97 -26.25 -0.10 0.68 16 34 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.16 0.93 7.96 -52.48 -0.42 0.52 16 36 H 0.09 1.28 7.00 -51.93 -0.36 0.91 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -30.72 350.01 -7.75 -38.47 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.13 Total: 5.69 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.97 Total: -1.33 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.07 Total: -52.33 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.12 Total: -4.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.03 Total: 0.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.72 -7.75 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997404580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.048 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds