Wall clock time and date at job start Wed Apr 1 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47350 * 240.00229 * 3 2 1 5 5 H 1.48503 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47596 * 120.00171 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 197.35351 * 7 2 1 9 9 N 1.36937 * 120.00340 * 17.34632 * 7 2 1 10 10 C 1.46925 * 120.63308 * 207.68272 * 9 7 2 11 11 C 1.53188 * 108.77262 * 233.62679 * 10 9 7 12 12 C 1.53040 * 109.34006 * 305.34976 * 11 10 9 13 13 C 1.53105 * 109.50421 * 61.34814 * 12 11 10 14 14 H 1.08998 * 109.51397 * 58.63447 * 13 12 11 15 15 N 1.46499 * 109.48907 * 178.70017 * 13 12 11 16 16 C 1.34772 * 120.00199 * 204.85323 * 15 13 12 17 17 O 1.21702 * 119.99831 * 0.02562 * 16 15 13 18 18 C 1.46588 * 120.00362 * 179.97438 * 16 15 13 19 19 C 1.36642 * 125.45971 * 179.97438 * 18 16 15 20 20 C 1.37475 * 113.29790 * 179.97438 * 19 18 16 21 21 C 1.33813 * 115.09854 * 0.02562 * 20 19 18 22 22 C 1.50702 * 124.52129 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47442 * 89.99534 * 22 21 20 24 24 F 1.39908 * 109.47022 * 209.99708 * 22 21 20 25 25 F 1.39901 * 109.47129 * 329.99198 * 22 21 20 26 26 S 1.70620 * 110.95614 * 359.75271 * 21 20 19 27 27 C 1.46928 * 120.62463 * 27.69765 * 9 7 2 28 28 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58513 * 113.83916 * 10 9 7 30 30 H 1.08992 * 109.70519 * 353.48463 * 10 9 7 31 31 H 1.09002 * 109.50095 * 65.31604 * 11 10 9 32 32 H 1.09000 * 109.50144 * 185.38068 * 11 10 9 33 33 H 1.09007 * 109.46039 * 181.40376 * 12 11 10 34 34 H 1.08997 * 109.46245 * 301.35489 * 12 11 10 35 35 H 0.97004 * 120.00001 * 24.85250 * 15 13 12 36 36 H 1.08003 * 123.35429 * 359.95251 * 19 18 16 37 37 H 1.07994 * 122.44908 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.58783 * 246.15803 * 27 9 7 39 39 H 1.09003 * 109.58686 * 6.58864 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2784 9 7 1.3722 -2.3610 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9917 12 6 0.8196 -4.6894 -1.8634 13 6 0.5013 -3.3032 -2.4301 14 1 1.3495 -2.9446 -3.0131 15 7 -0.6823 -3.3865 -3.2894 16 6 -0.8703 -2.4785 -4.2674 17 8 -0.0564 -1.5896 -4.4371 18 6 -2.0543 -2.5620 -5.1276 19 6 -2.3549 -1.7044 -6.1480 20 6 -3.5285 -2.0163 -6.7925 21 6 -4.1685 -3.0913 -6.3176 22 6 -5.4695 -3.6209 -6.8634 23 9 -5.2068 -4.5525 -7.8735 24 9 -6.1896 -4.2386 -5.8351 25 9 -6.2201 -2.5633 -7.3880 26 16 -3.3118 -3.7858 -5.0158 27 6 0.2278 -2.3340 -1.2757 28 1 -0.4850 0.8401 0.0004 29 1 1.0469 -4.0695 0.8267 30 1 2.7392 -3.5197 0.7478 31 1 2.9087 -4.2386 -1.5879 32 1 2.3148 -5.6005 -0.6073 33 1 0.9908 -5.3873 -2.6832 34 1 -0.0196 -5.0367 -1.2607 35 1 -1.3308 -4.0952 -3.1544 36 1 -1.7327 -0.8648 -6.4209 37 1 -3.9066 -1.4357 -7.6209 38 1 -0.6744 -2.6411 -0.7467 39 1 0.0984 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009696891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:33 Heat of formation + Delta-G solvation = -130.207640 kcal Electronic energy + Delta-G solvation = -28049.256329 eV Core-core repulsion = 23476.274602 eV Total energy + Delta-G solvation = -4572.981727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -50.52736 -48.05234 -48.00558 -39.80682 -38.22368 -37.17988 -34.27534 -32.77024 -31.42885 -30.08746 -29.10970 -26.77654 -25.31000 -24.04344 -22.67153 -22.17314 -20.91984 -20.17639 -19.68180 -19.09668 -18.88452 -18.27568 -17.02518 -16.77286 -16.30195 -15.47609 -15.12705 -14.95704 -14.86721 -14.64702 -14.45915 -14.41893 -14.16495 -14.15737 -14.05021 -13.63357 -13.53012 -13.27273 -12.97405 -12.81945 -12.58904 -12.47253 -12.36410 -11.93530 -11.42518 -11.06021 -10.86167 -10.72201 -10.54643 -10.30473 -10.14053 -9.97774 -9.73971 -9.58704 -9.43625 -9.01690 -8.71828 -8.45679 -6.69781 -5.78472 -3.21613 -0.08633 0.81910 1.30650 1.93909 2.25651 3.16948 3.27499 3.30977 3.42042 3.47849 3.50008 3.77974 3.96119 4.51515 4.70422 4.80246 4.97556 5.26983 5.34758 5.43120 5.48571 5.56061 5.59731 5.70168 5.87377 6.00753 6.07269 6.26694 6.37082 6.38890 6.61876 6.68143 6.78309 6.91570 7.20793 7.64943 7.66472 7.81139 8.31656 8.45169 9.19730 9.83760 10.38244 11.29669 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.002782 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.404956 B =10063.470477 C =11050.317816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.117 4.117 13 C 0.116 3.884 14 H 0.087 0.913 15 N -0.712 5.712 16 C 0.580 3.420 17 O -0.508 6.508 18 C -0.216 4.216 19 C -0.076 4.076 20 C -0.069 4.069 21 C -0.340 4.340 22 C 0.545 3.455 23 F -0.171 7.171 24 F -0.172 7.172 25 F -0.168 7.168 26 S 0.281 5.719 27 C 0.166 3.834 28 H 0.255 0.745 29 H 0.019 0.981 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.389 0.611 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.019 0.981 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 -11.208 -13.642 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.011 3.989 14 H 0.105 0.895 15 N -0.362 5.362 16 C 0.364 3.636 17 O -0.384 6.384 18 C -0.338 4.338 19 C -0.108 4.108 20 C -0.104 4.104 21 C -0.460 4.460 22 C 0.489 3.511 23 F -0.152 7.152 24 F -0.153 7.153 25 F -0.150 7.150 26 S 0.551 5.449 27 C 0.039 3.961 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.184 0.816 37 H 0.174 0.826 38 H 0.037 0.963 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.798 -11.706 -12.764 19.899 hybrid contribution -0.121 1.707 -1.076 2.022 sum -9.919 -9.999 -13.840 19.746 Atomic orbital electron populations 1.69999 1.05359 1.25745 1.53168 1.25027 0.95263 0.98522 1.00361 0.86366 0.79003 0.83271 0.78125 1.20834 1.21595 1.20885 1.19107 0.92764 0.84813 1.42117 0.91571 1.43945 1.36004 1.01685 1.49373 1.20964 0.97826 0.86807 0.92874 1.22002 0.96846 0.99463 0.98731 1.21704 0.99150 0.95762 0.98907 1.22135 0.86430 0.97362 0.92931 0.89540 1.46021 1.26674 1.30178 1.33327 1.16825 0.84020 0.82706 0.80077 1.90909 1.43884 1.33483 1.70140 1.25325 1.01584 1.02648 1.04264 1.20769 0.96242 1.00142 0.93633 1.19946 0.94285 0.95284 1.00889 1.24333 1.03347 1.08078 1.10248 1.17165 0.82836 0.75470 0.75629 1.93248 1.93966 1.66585 1.61397 1.93237 1.79822 1.83417 1.58873 1.93221 1.77950 1.56794 1.86991 1.83071 1.11036 1.25512 1.25295 1.21107 0.88922 0.98916 0.87174 0.93546 0.96336 0.92520 0.92028 0.92481 0.92924 0.92112 0.77734 0.81580 0.82581 0.96330 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 2 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 22.25 29.59 -169.99 -5.03 17.22 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -7.15 9.59 -15.06 -0.14 -7.29 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 10 C 0.14 2.85 6.51 -3.71 -0.02 2.83 16 11 C -0.13 -2.11 6.08 -26.61 -0.16 -2.28 16 12 C -0.12 -1.79 5.36 -26.66 -0.14 -1.94 16 13 C 0.12 2.17 2.60 -67.78 -0.18 2.00 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.71 -11.21 5.08 -55.00 -0.28 -11.49 16 16 C 0.58 9.84 7.75 -12.90 -0.10 9.74 16 17 O -0.51 -10.83 16.50 5.19 0.09 -10.75 16 18 C -0.22 -2.84 6.45 -36.79 -0.24 -3.07 16 19 C -0.08 -0.88 10.01 -40.44 -0.40 -1.29 16 20 C -0.07 -0.67 9.64 -41.41 -0.40 -1.07 16 21 C -0.34 -3.42 5.75 -35.86 -0.21 -3.63 16 22 C 0.54 5.29 3.50 36.01 0.13 5.42 16 23 F -0.17 -1.67 17.30 2.25 0.04 -1.63 16 24 F -0.17 -1.73 16.97 2.25 0.04 -1.69 16 25 F -0.17 -1.64 16.88 2.25 0.04 -1.60 16 26 S 0.28 2.83 21.75 -107.50 -2.34 0.50 16 27 C 0.17 3.94 4.89 -3.71 -0.02 3.92 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.39 4.84 7.72 -40.82 -0.31 4.53 16 36 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.16 1.14 7.96 -52.49 -0.42 0.72 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 2.69 6.04 -51.93 -0.31 2.38 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -31.80 352.94 -8.36 -40.16 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.36 Total: 1.47 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.97 Total: 3.46 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.17 Total: -52.45 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.12 Total: -4.93 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.34 Total: 0.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.80 -8.36 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009696891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.050 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds