Wall clock time and date at job start Wed Apr 1 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48502 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47184 * 300.00465 * 3 2 1 6 6 H 1.48500 * 109.46893 * 60.00368 * 3 2 1 7 7 C 1.38809 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00282 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64662 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.82969 * 155.83574 * 10 9 7 12 12 C 1.55158 * 101.58443 * 37.01239 * 11 10 9 13 13 H 1.08997 * 110.71949 * 83.03482 * 12 11 10 14 14 C 1.52994 * 110.72269 * 206.13638 * 12 11 10 15 15 N 1.46495 * 109.47120 * 184.99956 * 14 12 11 16 16 C 1.34784 * 119.99891 * 179.97438 * 15 14 12 17 17 O 1.21634 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.47189 * 119.99664 * 179.97438 * 16 15 14 19 19 C 1.36011 * 123.46385 * 359.97438 * 18 16 15 20 20 S 1.70447 * 110.81829 * 180.02562 * 19 18 16 21 21 C 1.75513 * 92.44464 * 359.97438 * 20 19 18 22 22 C 1.32769 * 110.57240 * 0.24585 * 21 20 19 23 23 C 1.50703 * 123.45292 * 179.75275 * 22 21 20 24 24 F 1.39891 * 109.47473 * 0.02683 * 23 22 21 25 25 F 1.39908 * 109.46644 * 120.02587 * 23 22 21 26 26 F 1.39894 * 109.47035 * 240.02020 * 23 22 21 27 27 C 1.47023 * 125.65234 * 179.97438 * 9 7 2 28 28 H 0.96997 * 119.99997 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36320 * 37.00239 * 10 9 7 30 30 H 1.08990 * 110.36781 * 274.67782 * 10 9 7 31 31 H 1.09001 * 111.00667 * 278.93635 * 11 10 9 32 32 H 1.09002 * 111.03825 * 155.10264 * 11 10 9 33 33 H 1.08999 * 109.47405 * 64.99166 * 14 12 11 34 34 H 1.09002 * 109.47196 * 304.99719 * 14 12 11 35 35 H 0.96996 * 120.00116 * 359.97438 * 15 14 12 36 36 H 1.08002 * 124.58988 * 359.95888 * 19 18 16 37 37 H 1.08002 * 124.70940 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.87698 * 61.67540 * 27 9 7 39 39 H 1.08998 * 109.88009 * 300.51235 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4015 -3.9319 -0.6135 12 6 0.7785 -4.7525 -0.0292 13 1 0.5448 -5.1015 0.9766 14 6 1.1233 -5.9306 -0.9424 15 7 2.1569 -6.7532 -0.3091 16 6 2.6198 -7.8535 -0.9349 17 8 2.1790 -8.1637 -2.0253 18 6 3.6587 -8.6796 -0.2988 19 6 4.2008 -8.3984 0.9165 20 16 5.3710 -9.5624 1.3419 21 6 5.1319 -10.4571 -0.1490 22 6 4.2108 -9.8695 -0.9032 23 6 3.7827 -10.3924 -2.2503 24 9 4.4991 -11.5565 -2.5478 25 9 2.4139 -10.6807 -2.2250 26 9 4.0375 -9.4252 -3.2283 27 6 1.9319 -3.7275 -0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5992 -1.7584 -0.6156 30 1 -0.5271 -2.4876 1.0178 31 1 -0.3519 -3.8969 -1.7019 32 1 -1.3589 -4.3330 -0.2809 33 1 1.4921 -5.5548 -1.8968 34 1 0.2310 -6.5338 -1.1099 35 1 2.5081 -6.5060 0.5606 36 1 3.9276 -7.5515 1.5286 37 1 5.6637 -11.3580 -0.4176 38 1 2.5285 -3.8650 0.9003 39 1 2.5582 -3.8502 -0.8852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029025030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:56 Heat of formation + Delta-G solvation = -126.013601 kcal Electronic energy + Delta-G solvation = -28170.397353 eV Core-core repulsion = 23597.597493 eV Total energy + Delta-G solvation = -4572.799860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.11466 -47.69835 -47.47356 -40.13430 -37.99812 -37.24635 -34.78020 -32.66517 -31.16246 -29.71009 -28.28593 -27.14306 -25.67364 -24.58679 -23.41400 -21.45369 -20.36380 -19.91541 -19.71444 -18.73200 -18.45140 -18.42112 -17.37803 -16.86468 -16.47432 -15.94151 -15.42272 -14.89431 -14.63051 -14.56240 -14.38556 -14.11357 -13.96366 -13.75729 -13.67489 -13.64108 -13.53254 -13.50869 -13.41572 -12.72501 -12.54226 -12.51937 -11.80741 -11.74368 -11.60691 -11.53525 -10.97817 -10.84368 -10.47890 -10.18659 -10.05949 -10.00993 -9.81042 -9.80465 -9.54757 -9.18302 -8.94862 -8.68123 -6.86536 -5.68346 -3.10246 0.16165 0.79134 1.13237 1.19118 2.65027 3.03070 3.10530 3.37652 3.43120 3.45677 3.70762 3.90121 4.28511 4.39036 4.45996 4.63997 4.74256 4.91942 5.06703 5.21193 5.29210 5.35438 5.39685 5.49938 5.67234 5.84554 6.03225 6.07610 6.31252 6.34952 6.50605 6.55867 6.67542 6.86517 7.40370 7.48379 7.60185 7.82937 8.09711 8.33664 9.19211 9.80143 10.44637 11.35640 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.002377 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.699220 B =11775.440413 C =12409.188047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.715 5.715 16 C 0.566 3.434 17 O -0.522 6.522 18 C -0.120 4.120 19 C -0.213 4.213 20 S 0.248 5.752 21 C -0.185 4.185 22 C -0.154 4.154 23 C 0.535 3.465 24 F -0.185 7.185 25 F -0.164 7.164 26 F -0.163 7.163 27 C 0.141 3.859 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.183 0.817 37 H 0.185 0.815 38 H 0.017 0.983 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -23.847 3.352 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.010 3.990 15 N -0.365 5.365 16 C 0.350 3.650 17 O -0.399 6.399 18 C -0.136 4.136 19 C -0.351 4.351 20 S 0.516 5.484 21 C -0.321 4.321 22 C -0.168 4.168 23 C 0.479 3.521 24 F -0.166 7.166 25 F -0.145 7.145 26 F -0.144 7.144 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.200 0.800 37 H 0.202 0.798 38 H 0.035 0.965 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.099 -24.011 3.806 26.325 hybrid contribution -0.342 1.156 -0.831 1.464 sum 9.757 -22.856 2.975 25.029 Atomic orbital electron populations 1.69807 1.04891 1.24696 1.57648 1.24796 0.95742 0.97755 1.02406 0.85999 0.78640 0.83586 0.77275 1.20538 1.21684 1.21756 1.19117 0.90513 0.82474 1.43027 0.90495 1.44516 1.02003 0.99713 1.86838 1.21937 0.84654 0.92539 0.98182 1.23011 0.95469 0.98530 1.00412 1.22456 0.98417 0.93968 0.98582 0.90565 1.21532 0.89910 0.90920 0.96620 1.45876 1.41719 1.26031 1.22922 1.17460 0.81520 0.80825 0.85183 1.90873 1.58623 1.70635 1.19780 1.19921 1.01525 0.96898 0.95269 1.25780 1.02932 1.06135 1.00230 1.83224 1.34626 1.14666 1.15913 1.25579 1.02131 1.05376 0.99021 1.19949 1.02029 0.98419 0.96416 1.17433 0.75380 0.74944 0.84392 1.93153 1.78489 1.50657 1.94309 1.93244 1.31296 1.93301 1.96635 1.93250 1.93714 1.62935 1.64482 1.21338 0.93434 0.86027 0.97672 0.93747 0.87498 0.96995 0.91749 0.92062 0.90842 0.91258 0.76631 0.79968 0.79788 0.96540 0.95734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.21 3.40 -170.07 -0.58 -15.79 16 10 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 11 C -0.13 -2.45 6.53 -24.58 -0.16 -2.61 16 12 C -0.11 -1.84 2.96 -88.79 -0.26 -2.11 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.13 1.92 5.02 -4.05 -0.02 1.90 16 15 N -0.71 -8.97 5.44 -61.46 -0.33 -9.30 16 16 C 0.57 7.91 7.79 -12.62 -0.10 7.81 16 17 O -0.52 -9.09 12.98 5.25 0.07 -9.02 16 18 C -0.12 -1.32 5.98 -104.63 -0.63 -1.95 16 19 C -0.21 -1.60 10.38 29.93 0.31 -1.29 16 20 S 0.25 1.33 23.02 -107.50 -2.48 -1.14 16 21 C -0.18 -1.33 10.45 28.86 0.30 -1.03 16 22 C -0.15 -1.65 5.44 -104.06 -0.57 -2.21 16 23 C 0.54 6.78 2.79 36.01 0.10 6.88 16 24 F -0.18 -2.00 16.42 2.25 0.04 -1.97 16 25 F -0.16 -2.36 15.76 2.25 0.04 -2.32 16 26 F -0.16 -2.41 15.81 2.25 0.04 -2.38 16 27 C 0.14 2.80 6.75 -3.06 -0.02 2.78 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 4.00 6.97 -40.82 -0.28 3.72 16 36 H 0.18 0.97 7.01 -52.49 -0.37 0.60 16 37 H 0.18 0.88 7.65 -52.49 -0.40 0.48 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.02 0.50 7.68 -51.93 -0.40 0.10 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -33.23 347.54 -7.99 -41.22 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.25 Total: -0.34 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.31 Total: 5.02 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.35 Total: -51.20 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.48 Total: -1.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.23 -7.99 -41.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029025030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.793 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds