Wall clock time and date at job start Wed Apr 1 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48502 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47184 * 300.00465 * 3 2 1 6 6 H 1.48500 * 109.46893 * 60.00368 * 3 2 1 7 7 C 1.38809 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00282 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64662 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.82969 * 155.83574 * 10 9 7 12 12 C 1.55158 * 101.58443 * 37.01239 * 11 10 9 13 13 H 1.08997 * 110.71949 * 83.03482 * 12 11 10 14 14 C 1.52994 * 110.72269 * 206.13638 * 12 11 10 15 15 N 1.46495 * 109.47120 * 184.99956 * 14 12 11 16 16 C 1.34784 * 119.99891 * 179.97438 * 15 14 12 17 17 O 1.21634 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.47189 * 119.99664 * 179.97438 * 16 15 14 19 19 C 1.36011 * 123.46385 * 359.97438 * 18 16 15 20 20 S 1.70447 * 110.81829 * 180.02562 * 19 18 16 21 21 C 1.75513 * 92.44464 * 359.97438 * 20 19 18 22 22 C 1.32769 * 110.57240 * 0.24585 * 21 20 19 23 23 C 1.50703 * 123.45292 * 179.75275 * 22 21 20 24 24 F 1.39891 * 109.47473 * 0.02683 * 23 22 21 25 25 F 1.39908 * 109.46644 * 120.02587 * 23 22 21 26 26 F 1.39894 * 109.47035 * 240.02020 * 23 22 21 27 27 C 1.47023 * 125.65234 * 179.97438 * 9 7 2 28 28 H 0.96997 * 119.99997 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36320 * 37.00239 * 10 9 7 30 30 H 1.08990 * 110.36781 * 274.67782 * 10 9 7 31 31 H 1.09001 * 111.00667 * 278.93635 * 11 10 9 32 32 H 1.09002 * 111.03825 * 155.10264 * 11 10 9 33 33 H 1.08999 * 109.47405 * 64.99166 * 14 12 11 34 34 H 1.09002 * 109.47196 * 304.99719 * 14 12 11 35 35 H 0.96996 * 120.00116 * 359.97438 * 15 14 12 36 36 H 1.08002 * 124.58988 * 359.95888 * 19 18 16 37 37 H 1.08002 * 124.70940 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.87698 * 61.67540 * 27 9 7 39 39 H 1.08998 * 109.88009 * 300.51235 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4015 -3.9319 -0.6135 12 6 0.7785 -4.7525 -0.0292 13 1 0.5448 -5.1015 0.9766 14 6 1.1233 -5.9306 -0.9424 15 7 2.1569 -6.7532 -0.3091 16 6 2.6198 -7.8535 -0.9349 17 8 2.1790 -8.1637 -2.0253 18 6 3.6587 -8.6796 -0.2988 19 6 4.2008 -8.3984 0.9165 20 16 5.3710 -9.5624 1.3419 21 6 5.1319 -10.4571 -0.1490 22 6 4.2108 -9.8695 -0.9032 23 6 3.7827 -10.3924 -2.2503 24 9 4.4991 -11.5565 -2.5478 25 9 2.4139 -10.6807 -2.2250 26 9 4.0375 -9.4252 -3.2283 27 6 1.9319 -3.7275 -0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5992 -1.7584 -0.6156 30 1 -0.5271 -2.4876 1.0178 31 1 -0.3519 -3.8969 -1.7019 32 1 -1.3589 -4.3330 -0.2809 33 1 1.4921 -5.5548 -1.8968 34 1 0.2310 -6.5338 -1.1099 35 1 2.5081 -6.5060 0.5606 36 1 3.9276 -7.5515 1.5286 37 1 5.6637 -11.3580 -0.4176 38 1 2.5285 -3.8650 0.9003 39 1 2.5582 -3.8502 -0.8852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029025030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:55 Heat of formation + Delta-G solvation = -147.484500 kcal Electronic energy + Delta-G solvation = -28171.328401 eV Core-core repulsion = 23597.597493 eV Total energy + Delta-G solvation = -4573.730908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.06703 -48.63004 -48.50190 -41.11163 -39.38857 -38.19791 -36.11943 -34.38884 -32.19781 -31.26320 -29.78981 -28.00901 -27.26194 -25.78449 -24.69362 -22.49814 -21.90031 -21.34473 -20.66878 -19.63470 -19.40262 -19.34104 -18.84456 -18.06179 -17.35355 -17.21888 -16.68736 -16.46822 -16.02107 -15.57998 -15.48093 -15.40724 -14.97068 -14.93516 -14.70890 -14.70533 -14.50534 -14.31135 -14.27738 -14.02943 -13.89230 -13.55033 -13.39201 -13.25348 -13.14447 -12.80778 -12.70876 -12.24998 -11.97980 -11.88506 -11.82669 -11.59630 -11.39101 -11.03271 -10.74735 -10.41015 -10.16958 -9.58059 -8.87657 -7.77544 -5.21602 -0.42308 0.27587 0.37787 0.62099 1.46581 1.47586 1.57670 1.80758 2.06721 2.15555 2.49469 2.88113 3.12273 3.32299 3.44292 3.58224 3.66988 3.77104 3.88372 3.97597 4.07341 4.23399 4.31131 4.44822 4.63423 4.64896 4.69789 4.76461 4.84234 4.91136 5.04668 5.13050 5.30746 5.41094 5.48509 5.66619 5.83249 6.32260 6.45490 7.11464 7.12854 7.79432 8.42643 9.24527 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.002377 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.699220 B =11775.440413 C =12409.188047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.092 4.092 13 H 0.101 0.899 14 C 0.146 3.854 15 N -0.706 5.706 16 C 0.562 3.438 17 O -0.568 6.568 18 C -0.156 4.156 19 C -0.207 4.207 20 S 0.344 5.656 21 C -0.181 4.181 22 C -0.184 4.184 23 C 0.528 3.472 24 F -0.177 7.177 25 F -0.180 7.180 26 F -0.183 7.183 27 C 0.138 3.862 28 H 0.246 0.754 29 H 0.069 0.931 30 H -0.008 1.008 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.206 0.794 37 H 0.207 0.793 38 H 0.033 0.967 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.600 -25.398 5.560 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.163 4.163 12 C -0.112 4.112 13 H 0.119 0.881 14 C 0.022 3.978 15 N -0.358 5.358 16 C 0.349 3.651 17 O -0.448 6.448 18 C -0.172 4.172 19 C -0.345 4.345 20 S 0.612 5.388 21 C -0.318 4.318 22 C -0.197 4.197 23 C 0.472 3.528 24 F -0.158 7.158 25 F -0.162 7.162 26 F -0.164 7.164 27 C 0.013 3.987 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.010 0.990 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.250 0.750 36 H 0.223 0.777 37 H 0.224 0.776 38 H 0.051 0.949 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.203 -25.592 6.045 28.990 hybrid contribution -0.877 1.565 -1.432 2.295 sum 11.326 -24.027 4.613 26.960 Atomic orbital electron populations 1.70065 1.06188 1.24908 1.58745 1.25630 0.96644 1.00980 1.02848 0.84999 0.78133 0.79434 0.76702 1.19069 1.22044 1.21817 1.19485 0.91003 0.83856 1.42281 0.90187 1.44837 1.02829 1.01022 1.86806 1.21722 0.84097 0.94781 0.96672 1.22853 0.97861 0.95584 0.99952 1.22286 0.95719 0.93144 1.00014 0.88109 1.21223 0.90710 0.90536 0.95359 1.45700 1.41210 1.25530 1.23345 1.17949 0.81657 0.80850 0.84690 1.90843 1.60334 1.71796 1.21820 1.19669 1.02756 0.97773 0.97047 1.26182 1.02408 1.07070 0.98888 1.83031 1.31366 1.11568 1.12805 1.25984 1.00483 1.05780 0.99539 1.19833 1.04303 0.99627 0.95963 1.17790 0.74806 0.74893 0.85340 1.93151 1.78118 1.50167 1.94405 1.93196 1.32806 1.93416 1.96760 1.93198 1.93770 1.63815 1.65625 1.21518 0.94707 0.84622 0.97883 0.94375 0.91262 0.98952 0.92149 0.89191 0.92942 0.90621 0.74992 0.77729 0.77582 0.94932 0.96357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.48 10.09 21.65 0.22 -56.26 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.50 29.55 68.60 2.03 47.52 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.24 -13.21 10.27 84.03 0.86 -12.34 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -31.82 3.40 -691.97 -2.35 -34.17 16 10 C 0.15 7.36 5.89 86.85 0.51 7.88 16 11 C -0.12 -4.39 6.53 31.99 0.21 -4.18 16 12 C -0.09 -2.80 2.96 -9.61 -0.03 -2.83 16 13 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 14 C 0.15 4.04 5.02 86.38 0.43 4.47 16 15 N -0.71 -16.65 5.44 -466.60 -2.54 -19.19 16 16 C 0.56 15.46 7.79 86.59 0.67 16.13 16 17 O -0.57 -20.31 12.98 -4.14 -0.05 -20.37 16 18 C -0.16 -3.21 5.98 -19.87 -0.12 -3.33 16 19 C -0.21 -2.40 10.38 67.30 0.70 -1.70 16 20 S 0.34 2.14 23.02 -56.49 -1.30 0.84 16 21 C -0.18 -2.06 10.45 66.64 0.70 -1.37 16 22 C -0.18 -3.71 5.44 -19.46 -0.11 -3.81 16 23 C 0.53 13.57 2.79 71.24 0.20 13.77 16 24 F -0.18 -3.79 16.42 44.97 0.74 -3.05 16 25 F -0.18 -5.41 15.76 44.97 0.71 -4.70 16 26 F -0.18 -5.66 15.81 44.97 0.71 -4.95 16 27 C 0.14 5.30 6.75 86.73 0.59 5.88 16 28 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.05 1.70 7.93 -2.39 -0.02 1.68 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 7.16 6.97 -92.71 -0.65 6.51 16 36 H 0.21 1.27 7.01 -2.91 -0.02 1.25 16 37 H 0.21 1.25 7.65 -2.91 -0.02 1.23 16 38 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.02 0.74 7.68 -2.39 -0.02 0.72 16 Total: -1.00 -76.35 347.54 3.72 -72.63 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.47 Total: 6.55 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.08 Total: 15.16 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.67 Total: -109.62 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 9 Polarization: -14.87 SS G_CDS: 2.16 Total: -12.71 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.30 Total: 0.84 kcal Total: -76.35 3.72 -72.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029025030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.854 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds