Wall clock time and date at job start Wed Apr 1 2020 04:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64709 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.83070 * 204.09032 * 10 9 7 12 12 H 1.09000 * 111.00222 * 81.06850 * 11 10 9 13 13 O 1.42904 * 111.00327 * 204.87385 * 11 10 9 14 14 C 1.55151 * 101.58341 * 322.99186 * 11 10 9 15 15 H 1.09004 * 110.71930 * 276.95684 * 14 11 10 16 16 N 1.46503 * 110.72030 * 153.86783 * 14 11 10 17 17 C 1.34773 * 119.99974 * 154.99761 * 16 14 11 18 18 O 1.21589 * 120.00255 * 0.02562 * 17 16 14 19 19 C 1.47554 * 120.00185 * 179.97438 * 17 16 14 20 20 C 1.39872 * 120.16579 * 89.72655 * 19 17 16 21 21 F 1.35107 * 120.08251 * 359.97438 * 20 19 17 22 22 C 1.38399 * 119.83241 * 179.72706 * 20 19 17 23 23 F 1.35101 * 119.91849 * 180.25616 * 22 20 19 24 24 C 1.38468 * 120.16584 * 0.54923 * 22 20 19 25 25 C 1.38478 * 120.33528 * 359.72214 * 24 22 20 26 26 F 1.35098 * 119.91685 * 179.97438 * 25 24 22 27 27 C 1.38402 * 120.16786 * 0.02562 * 25 24 22 28 28 F 1.35088 * 120.08634 * 179.97438 * 27 25 24 29 29 C 1.47023 * 125.65252 * 179.71302 * 9 7 2 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36756 * 322.92683 * 10 9 7 32 32 H 1.08993 * 110.36856 * 85.25403 * 10 9 7 33 33 H 0.96701 * 114.00042 * 298.55101 * 13 11 10 34 34 H 0.96993 * 119.99972 * 334.99547 * 16 14 11 35 35 H 1.07994 * 119.83600 * 179.74766 * 24 22 20 36 36 H 1.08998 * 109.88037 * 298.40056 * 29 9 7 37 37 H 1.08998 * 109.87956 * 59.56130 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0005 11 6 -0.4021 -3.9323 0.6111 12 1 -0.3533 -3.8981 1.6995 13 8 -1.6574 -4.4568 0.1738 14 6 0.7783 -4.7524 0.0269 15 1 0.5452 -5.1007 -0.9793 16 7 1.1077 -5.8813 0.9007 17 6 1.7103 -6.9740 0.3916 18 8 1.9811 -7.0227 -0.7928 19 6 2.0426 -8.1107 1.2717 20 6 1.1170 -9.1406 1.4693 21 9 -0.0854 -9.0976 0.8548 22 6 1.4381 -10.2064 2.2917 23 9 0.5474 -11.2047 2.4797 24 6 2.6676 -10.2492 2.9272 25 6 3.5870 -9.2305 2.7410 26 9 4.7838 -9.2806 3.3656 27 6 3.2824 -8.1607 1.9174 28 9 4.1803 -7.1676 1.7373 29 6 1.9317 -3.7275 -0.0049 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5998 -1.7588 0.6148 32 1 -0.5266 -2.4868 -1.0191 33 1 -2.4195 -3.9211 0.4334 34 1 0.8920 -5.8423 1.8455 35 1 2.9110 -11.0814 3.5711 36 1 2.5251 -3.8622 -0.9092 37 1 2.5611 -3.8531 0.8761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077038957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:22 Heat of formation + Delta-G solvation = -191.320199 kcal Electronic energy + Delta-G solvation = -30684.499581 eV Core-core repulsion = 25542.654638 eV Total energy + Delta-G solvation = -5141.844943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -50.14525 -50.09768 -49.18492 -49.17115 -40.27708 -38.79158 -37.76977 -35.14761 -34.27619 -32.25524 -31.47409 -30.47576 -28.52493 -27.18980 -25.44471 -24.27619 -23.60106 -21.46933 -20.74452 -20.18129 -19.09151 -19.07880 -18.75032 -17.52507 -17.33856 -17.09448 -17.03344 -16.71506 -16.44302 -16.13135 -15.90983 -15.59371 -15.41518 -15.35368 -14.99145 -14.85277 -14.54285 -14.25963 -13.96944 -13.73697 -13.44843 -12.99740 -12.69441 -12.67932 -12.40520 -12.14754 -11.99549 -11.55793 -11.37316 -11.09258 -10.85302 -10.41306 -10.24500 -10.00035 -9.85825 -9.75922 -9.41544 -9.25240 -9.03665 -8.76628 -6.98485 -5.77253 -3.19960 -0.21911 -0.10383 2.14711 2.15380 2.52914 2.95813 3.15298 3.22039 3.36061 3.40449 3.41563 3.67504 3.79786 4.11650 4.35699 4.53283 4.59574 4.66624 4.69113 4.88501 5.16314 5.19896 5.36180 5.53192 5.55790 5.75989 5.81697 5.98506 6.05216 6.24992 6.57136 6.74544 7.24100 7.30983 7.47995 7.65471 7.94759 8.03428 8.19979 9.08498 9.68852 10.30445 11.27136 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.002900 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.777067 B = 9654.340210 C =10860.685020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.919 3.081 4 H -0.289 1.289 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.129 3.871 11 C 0.068 3.932 12 H 0.063 0.937 13 O -0.566 6.566 14 C 0.139 3.861 15 H 0.106 0.894 16 N -0.694 5.694 17 C 0.565 3.435 18 O -0.507 6.507 19 C -0.140 4.140 20 C 0.126 3.874 21 F -0.100 7.100 22 C 0.091 3.909 23 F -0.109 7.109 24 C -0.120 4.120 25 C 0.092 3.908 26 F -0.109 7.109 27 C 0.127 3.873 28 F -0.099 7.099 29 C 0.129 3.871 30 H 0.255 0.745 31 H 0.115 0.885 32 H 0.027 0.973 33 H 0.379 0.621 34 H 0.402 0.598 35 H 0.176 0.824 36 H 0.036 0.964 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -20.983 9.334 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.003 3.997 11 C 0.007 3.993 12 H 0.081 0.919 13 O -0.371 6.371 14 C 0.035 3.965 15 H 0.124 0.876 16 N -0.344 5.344 17 C 0.347 3.653 18 O -0.381 6.381 19 C -0.145 4.145 20 C 0.105 3.895 21 F -0.078 7.078 22 C 0.071 3.929 23 F -0.088 7.088 24 C -0.140 4.140 25 C 0.071 3.929 26 F -0.087 7.087 27 C 0.105 3.895 28 F -0.077 7.077 29 C 0.002 3.998 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.045 0.955 33 H 0.227 0.773 34 H 0.237 0.763 35 H 0.193 0.807 36 H 0.054 0.946 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.172 -21.219 8.199 22.851 hybrid contribution 0.069 1.198 0.651 1.365 sum 2.240 -20.020 8.850 22.003 Atomic orbital electron populations 1.69713 1.04958 1.25178 1.57448 1.24801 0.95790 0.97858 1.02026 0.86081 0.78391 0.82601 0.78015 1.21495 1.21046 1.21063 1.19065 0.90635 0.82059 1.43522 0.90168 1.44270 1.01426 0.99696 1.87283 1.22597 0.85659 0.91817 0.99640 1.23636 0.82572 0.95960 0.97085 0.91889 1.86408 1.15955 1.53386 1.81317 1.22190 0.94663 0.84664 0.95028 0.87556 1.45932 1.59376 1.16171 1.12914 1.17411 0.78985 0.81745 0.87140 1.90889 1.52040 1.80362 1.14826 1.19811 0.93750 0.98684 1.02283 1.17181 0.82657 0.94106 0.95593 1.91668 1.40129 1.95938 1.80049 1.16949 0.89004 0.86939 1.00048 1.91621 1.65982 1.57555 1.93610 1.20946 0.91097 1.00185 1.01739 1.16960 0.83847 0.95009 0.97059 1.91625 1.41162 1.96097 1.79819 1.17191 0.87373 0.87153 0.97740 1.91673 1.64768 1.57907 1.93315 1.21625 0.93484 0.85327 0.99326 0.93482 0.86764 0.95514 0.77338 0.76298 0.80695 0.94586 0.94938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.85 10.09 55.49 0.56 -25.29 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -14.96 3.39 -170.07 -0.58 -15.53 16 10 C 0.13 2.97 5.62 -2.53 -0.01 2.95 16 11 C 0.07 1.23 4.06 -24.59 -0.10 1.13 16 12 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 13 O -0.57 -9.42 13.48 -35.23 -0.47 -9.90 16 14 C 0.14 2.56 3.05 -66.10 -0.20 2.36 16 15 H 0.11 2.17 7.55 -51.93 -0.39 1.78 16 16 N -0.69 -10.45 5.10 -53.06 -0.27 -10.72 16 17 C 0.57 8.79 6.54 -12.46 -0.08 8.71 16 18 O -0.51 -9.79 16.75 5.29 0.09 -9.70 16 19 C -0.14 -1.65 5.64 -104.87 -0.59 -2.24 16 20 C 0.13 1.31 7.29 -38.91 -0.28 1.03 16 21 F -0.10 -1.23 16.74 2.25 0.04 -1.19 16 22 C 0.09 0.72 7.29 -39.44 -0.29 0.44 16 23 F -0.11 -0.91 17.17 2.25 0.04 -0.87 16 24 C -0.12 -0.72 9.98 -39.41 -0.39 -1.11 16 25 C 0.09 0.74 7.29 -39.43 -0.29 0.46 16 26 F -0.11 -0.93 17.17 2.25 0.04 -0.89 16 27 C 0.13 1.35 7.29 -38.91 -0.28 1.06 16 28 F -0.10 -1.25 16.74 2.25 0.04 -1.22 16 29 C 0.13 2.75 7.00 -3.06 -0.02 2.72 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.11 2.88 5.87 -51.93 -0.31 2.58 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.38 4.82 9.11 45.56 0.42 5.24 16 34 H 0.40 4.89 8.55 -40.82 -0.35 4.54 16 35 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -32.04 341.93 -5.47 -37.50 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -2.28 Total: 5.24 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -2.80 Total: 10.88 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.29 Total: -51.54 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.39 Total: -19.59 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.15 Total: -4.17 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.04 -5.47 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077038957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.819 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds