Wall clock time and date at job start Wed Apr 1 2020 05:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48497 * 109.47016 * 234.26703 * 3 2 1 5 5 H 1.48499 * 109.47361 * 114.26399 * 3 2 1 6 6 H 1.48504 * 109.47153 * 354.26258 * 3 2 1 7 7 C 1.38814 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99781 * 33.41088 * 7 2 1 9 9 N 1.36933 * 120.00179 * 213.42264 * 7 2 1 10 10 C 1.46780 * 125.36099 * 355.05272 * 9 7 2 11 11 C 1.53925 * 107.61631 * 178.66934 * 10 9 7 12 12 H 1.09001 * 108.57720 * 101.54249 * 11 10 9 13 13 O 1.40856 * 110.45745 * 221.67350 * 11 10 9 14 14 C 1.41331 * 118.30845 * 68.19099 * 13 11 10 15 15 C 1.51959 * 111.60326 * 56.89545 * 14 13 11 16 16 N 1.44966 * 111.94136 * 319.69796 * 15 14 13 17 17 C 1.34775 * 117.33575 * 203.77982 * 16 15 14 18 18 O 1.21731 * 119.99922 * 176.63088 * 17 16 15 19 19 C 1.46430 * 120.00301 * 356.63174 * 17 16 15 20 20 C 1.35876 * 124.99791 * 170.80176 * 19 17 16 21 21 C 1.38718 * 115.21074 * 179.97438 * 20 19 17 22 22 O 1.36644 * 139.74572 * 179.97438 * 21 20 19 23 23 C 1.34074 * 109.73891 * 180.02562 * 22 21 20 24 24 C 1.34214 * 109.48714 * 0.02562 * 23 22 21 25 25 C 1.38031 * 113.38237 * 0.02562 * 21 20 19 26 26 S 1.75650 * 124.99614 * 350.49411 * 19 17 16 27 27 C 1.44542 * 125.32478 * 23.75612 * 16 15 14 28 28 H 1.08998 * 109.64623 * 105.96625 * 27 16 15 29 29 C 1.46873 * 125.36206 * 175.36507 * 9 7 2 30 30 H 0.97001 * 120.00182 * 185.01372 * 1 2 3 31 31 H 1.09001 * 109.82532 * 298.34233 * 10 9 7 32 32 H 1.08998 * 109.81957 * 59.29305 * 10 9 7 33 33 H 1.08993 * 109.05077 * 296.34817 * 14 13 11 34 34 H 1.08995 * 108.99656 * 177.40170 * 14 13 11 35 35 H 1.09002 * 108.98680 * 199.06542 * 15 14 13 36 36 H 1.09001 * 108.92408 * 80.28821 * 15 14 13 37 37 H 1.08007 * 122.39030 * 359.97438 * 20 19 17 38 38 H 1.08004 * 125.25121 * 179.97438 * 23 22 21 39 39 H 1.08004 * 126.50635 * 179.97438 * 24 23 22 40 40 H 1.08998 * 110.06447 * 317.02487 * 29 9 7 41 41 H 1.09001 * 110.06656 * 78.55323 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.2058 1.6375 -1.1365 5 1 2.9960 1.7588 1.2764 6 1 1.2913 2.7430 -0.1400 7 6 2.0102 -1.2021 -0.0005 8 1 1.6041 -2.0599 -0.5160 9 7 3.2097 -1.3005 0.6526 10 6 3.9177 -0.1899 1.3006 11 6 5.1994 -0.7606 1.9337 12 1 6.0429 -0.5212 1.2862 13 8 5.4103 -0.2004 3.2087 14 6 4.5101 -0.5356 4.2454 15 6 4.4386 -2.0383 4.4601 16 7 4.4494 -2.7657 3.2062 17 6 3.9131 -4.0022 3.2034 18 8 3.8409 -4.6320 2.1642 19 6 3.4172 -4.5880 4.4504 20 6 2.7026 -5.7402 4.5401 21 6 2.3356 -6.1094 5.8259 22 8 1.6561 -7.1036 6.4715 23 6 1.6549 -6.8681 7.7914 24 6 2.3222 -5.7312 8.0439 25 6 2.7689 -5.2262 6.7941 26 16 3.6652 -3.9087 6.0512 27 6 4.9880 -2.2729 1.9587 28 1 5.9332 -2.7720 1.7450 29 6 3.9937 -2.5326 0.8095 30 1 -0.4850 -0.8368 0.0734 31 1 4.1742 0.5674 0.5598 32 1 3.2883 0.2476 2.0755 33 1 3.5177 -0.1653 3.9884 34 1 4.8393 -0.0595 5.1689 35 1 3.5222 -2.2761 5.0002 36 1 5.2941 -2.3509 5.0588 37 1 2.4392 -6.3267 3.6722 38 1 1.1884 -7.4958 8.5362 39 1 2.4878 -5.2852 9.0135 40 1 3.3365 -3.3640 1.0642 41 1 4.5349 -2.7512 -0.1110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083191049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:45 Heat of formation + Delta-G solvation = 48.496433 kcal Electronic energy + Delta-G solvation = -29143.541751 eV Core-core repulsion = 25120.165954 eV Total energy + Delta-G solvation = -4023.375797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.68525 -41.11294 -38.79146 -36.40261 -35.99670 -35.15877 -32.85744 -32.51923 -30.59425 -29.34873 -28.23622 -27.75512 -24.86641 -24.21952 -23.61332 -22.76506 -21.23894 -20.51523 -20.12056 -19.02336 -18.56463 -17.69390 -17.21400 -17.07064 -16.49677 -16.20332 -15.75878 -15.67109 -15.42517 -14.96124 -14.76445 -14.55479 -14.23448 -13.66316 -13.35082 -13.24466 -13.04829 -12.93182 -12.72206 -12.43048 -12.24822 -12.13703 -11.88793 -11.41326 -11.34267 -11.13826 -11.00553 -10.62152 -10.44693 -10.30093 -9.94023 -9.70756 -9.28273 -9.05872 -8.62811 -8.57124 -8.30233 -8.13037 -7.05863 -6.35967 -3.11023 0.12626 1.05772 1.61353 1.88539 2.14667 2.33517 2.83674 3.09203 3.43212 3.54736 3.71826 3.75341 4.21328 4.36619 4.52086 4.57970 4.66411 4.77160 4.83627 4.90232 4.97928 5.01826 5.15073 5.26928 5.34823 5.39989 5.42770 5.55297 5.60064 5.62986 5.71062 5.75342 5.89163 5.95714 6.19335 6.43982 6.58363 6.62697 6.66980 6.96875 7.19717 7.42231 7.75973 8.07770 8.36055 9.04737 9.61672 10.26134 11.11906 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003642 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.593242 B = 7685.653201 C = 8200.292680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.011 4.011 3 Si 1.031 2.969 4 H -0.296 1.296 5 H -0.278 1.278 6 H -0.298 1.298 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.091 3.909 11 C 0.085 3.915 12 H 0.122 0.878 13 O -0.365 6.365 14 C 0.064 3.936 15 C 0.058 3.942 16 N -0.578 5.578 17 C 0.585 3.415 18 O -0.505 6.505 19 C -0.229 4.229 20 C -0.019 4.019 21 C 0.000 4.000 22 O -0.166 6.166 23 C 0.013 3.987 24 C -0.180 4.180 25 C -0.248 4.248 26 S 0.221 5.779 27 C 0.113 3.887 28 H 0.084 0.916 29 C 0.110 3.890 30 H 0.264 0.736 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.161 0.839 38 H 0.214 0.786 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 -9.216 19.123 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.213 4.213 3 Si 0.863 3.137 4 H -0.224 1.224 5 H -0.205 1.205 6 H -0.225 1.225 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.332 5.332 10 C -0.035 4.035 11 C 0.026 3.974 12 H 0.140 0.860 13 O -0.281 6.281 14 C -0.014 4.014 15 C -0.069 4.069 16 N -0.311 5.311 17 C 0.373 3.627 18 O -0.382 6.382 19 C -0.349 4.349 20 C -0.054 4.054 21 C -0.056 4.056 22 O -0.065 6.065 23 C -0.058 4.058 24 C -0.202 4.202 25 C -0.364 4.364 26 S 0.487 5.513 27 C 0.009 3.991 28 H 0.102 0.898 29 C -0.016 4.016 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.178 0.822 38 H 0.230 0.770 39 H 0.175 0.825 40 H 0.112 0.888 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.402 -6.697 18.861 22.557 hybrid contribution -0.795 -2.995 -0.289 3.113 sum 9.608 -9.692 18.572 23.047 Atomic orbital electron populations 1.70908 1.06421 1.29273 1.47759 1.25573 0.95793 1.00718 0.99206 0.84491 0.74906 0.77377 0.76941 1.22407 1.20467 1.22549 1.19958 0.93270 1.00002 1.32909 0.90138 1.44656 1.22299 1.01960 1.64314 1.22452 0.92074 0.92434 0.96523 1.22633 1.00194 0.90201 0.84348 0.86032 1.86918 1.53261 1.69932 1.18030 1.22214 0.95945 0.91413 0.91785 1.21878 1.03220 0.95920 0.85871 1.46356 1.59999 1.14956 1.09742 1.16820 0.77928 0.81456 0.86512 1.90772 1.55672 1.61046 1.30736 1.23935 1.11345 1.01877 0.97699 1.19020 0.96565 0.95462 0.94314 1.19245 1.02524 0.90394 0.93393 1.84341 1.60831 1.42324 1.19001 1.24134 1.00996 0.98370 0.82256 1.20974 1.04677 0.97664 0.96907 1.24982 1.09324 1.03758 0.98329 1.84449 1.53737 1.18670 0.94414 1.21768 0.97878 0.95599 0.83890 0.89849 1.22161 0.93925 0.92556 0.92987 0.92582 0.94798 0.93214 0.91693 0.86933 0.88828 0.90357 0.82157 0.76998 0.82502 0.88754 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.50 13.70 55.49 0.76 -27.74 16 2 C -0.01 -0.33 5.43 -17.43 -0.09 -0.43 16 3 Si 1.03 26.17 25.05 -169.99 -4.26 21.91 16 4 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.28 -6.42 5.04 56.52 0.28 -6.14 16 6 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 7 C -0.34 -9.81 10.38 -15.06 -0.16 -9.97 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.60 -15.16 3.37 -171.43 -0.58 -15.74 16 10 C 0.09 1.99 4.22 -3.41 -0.01 1.98 16 11 C 0.09 1.46 3.82 -26.39 -0.10 1.36 16 12 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 13 O -0.36 -5.64 10.25 -34.46 -0.35 -6.00 16 14 C 0.06 0.84 6.72 36.63 0.25 1.08 16 15 C 0.06 0.74 4.70 -5.39 -0.03 0.71 16 16 N -0.58 -9.36 3.09 -170.45 -0.53 -9.88 16 17 C 0.59 10.03 7.12 -12.96 -0.09 9.94 16 18 O -0.50 -10.05 13.65 5.16 0.07 -9.98 16 19 C -0.23 -3.31 6.06 -37.13 -0.23 -3.54 16 20 C -0.02 -0.27 9.88 -40.25 -0.40 -0.67 16 21 C 0.00 0.00 7.79 -39.48 -0.31 -0.31 16 22 O -0.17 -1.95 10.72 -0.74 -0.01 -1.96 16 23 C 0.01 0.10 12.00 29.31 0.35 0.45 16 24 C -0.18 -1.62 10.91 -39.56 -0.43 -2.05 16 25 C -0.25 -2.92 7.35 -38.21 -0.28 -3.20 16 26 S 0.22 2.45 17.73 -107.50 -1.91 0.54 16 27 C 0.11 1.96 3.42 -68.51 -0.23 1.73 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 C 0.11 2.38 6.29 -3.23 -0.02 2.36 16 30 H 0.26 8.29 8.73 -40.82 -0.36 7.94 16 31 H 0.03 0.78 4.90 -51.93 -0.25 0.52 16 32 H 0.05 1.17 4.97 -51.93 -0.26 0.91 16 33 H 0.06 0.99 6.84 -51.93 -0.35 0.63 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.15 4.62 -22.52 -0.10 1.05 16 36 H 0.08 0.80 7.33 -51.93 -0.38 0.42 16 37 H 0.16 2.20 8.02 -52.48 -0.42 1.78 16 38 H 0.21 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.10 2.26 4.77 -52.63 -0.25 2.00 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -35.72 329.82 -7.86 -43.58 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.25 Total: 0.84 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.78 Total: -0.56 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.34 Total: -53.36 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.29 Total: -17.94 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -4.26 Total: 21.91 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.91 Total: 0.54 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.72 -7.86 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083191049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.081 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds