Wall clock time and date at job start Wed Apr 1 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99584 * 2 1 4 4 H 1.48507 * 109.47109 * 239.99777 * 3 2 1 5 5 H 1.48499 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47363 * 120.00201 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 179.97438 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 N 1.46505 * 111.00202 * 204.91694 * 11 10 9 14 14 C 1.34778 * 120.00074 * 273.54598 * 13 11 10 15 15 O 1.21584 * 119.99885 * 0.02562 * 14 13 11 16 16 C 1.47578 * 119.99681 * 180.02562 * 14 13 11 17 17 C 1.39762 * 120.12603 * 359.72815 * 16 14 13 18 18 C 1.37939 * 119.91141 * 179.69693 * 17 16 14 19 19 F 1.35102 * 119.91182 * 180.31857 * 18 17 16 20 20 C 1.38889 * 120.16955 * 0.60036 * 18 17 16 21 21 F 1.35106 * 119.87588 * 179.69871 * 20 18 17 22 22 C 1.38613 * 120.25150 * 359.67313 * 20 18 17 23 23 F 1.35102 * 119.95898 * 180.02562 * 22 20 18 24 24 C 1.38402 * 120.07947 * 0.02562 * 22 20 18 25 25 F 1.35103 * 120.08211 * 179.97438 * 24 22 20 26 26 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 27 27 H 1.09002 * 110.85092 * 153.69981 * 26 11 10 28 28 O 1.42895 * 110.69130 * 277.05126 * 26 11 10 29 29 C 1.47018 * 125.64999 * 0.02562 * 9 7 2 30 30 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 32 32 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 33 33 H 0.96998 * 119.99743 * 93.55096 * 13 11 10 34 34 H 1.08001 * 120.03822 * 359.97438 * 17 16 14 35 35 H 0.96706 * 113.99347 * 174.82523 * 28 26 11 36 36 H 1.09002 * 109.88241 * 298.32312 * 29 9 7 37 37 H 1.09000 * 109.88049 * 59.33441 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9336 -3.7311 0.0005 11 6 0.8524 -4.6558 -0.6125 12 1 0.8580 -4.5954 -1.7008 13 7 1.0294 -6.0394 -0.1646 14 6 1.8622 -6.8625 -0.8320 15 8 2.4670 -6.4566 -1.8055 16 6 2.0401 -8.2564 -0.3810 17 6 1.3505 -8.7240 0.7411 18 6 1.5152 -10.0295 1.1550 19 9 0.8437 -10.4834 2.2359 20 6 2.3741 -10.8768 0.4669 21 9 2.5356 -12.1526 0.8811 22 6 3.0657 -10.4187 -0.6435 23 9 3.8992 -11.2481 -1.3088 24 6 2.9035 -9.1125 -1.0716 25 9 3.5780 -8.6658 -2.1536 26 6 -0.4518 -4.0434 -0.0301 27 1 -1.3012 -4.2478 -0.6820 28 8 -0.6953 -4.5352 1.2892 29 6 -0.1374 -2.5328 -0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 2.8336 -3.7402 -0.6143 32 1 2.1659 -4.0424 1.0190 33 1 0.5472 -6.3631 0.6123 34 1 0.6862 -8.0653 1.2807 35 1 -1.4530 -4.1250 1.7283 36 1 -0.5549 -2.0849 0.9013 37 1 -0.5571 -2.0494 -0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083981896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:02 Heat of formation + Delta-G solvation = -190.078587 kcal Electronic energy + Delta-G solvation = -30426.210863 eV Core-core repulsion = 25284.419761 eV Total energy + Delta-G solvation = -5141.791103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -50.41708 -49.95200 -49.34712 -48.85907 -40.41421 -38.76834 -37.78849 -34.94232 -34.29744 -32.14334 -31.22499 -30.75845 -28.56331 -27.21487 -25.19213 -24.38205 -23.77655 -21.43519 -20.62488 -20.15314 -19.27516 -18.89335 -18.62343 -17.59226 -17.50153 -17.09204 -17.03519 -16.67118 -16.27525 -16.24401 -15.75574 -15.37208 -15.35697 -15.14142 -14.90786 -14.84870 -14.77922 -14.46036 -14.09613 -13.72659 -13.25910 -12.87191 -12.80370 -12.72303 -12.52746 -12.40091 -12.07872 -11.39303 -11.04260 -10.88469 -10.61092 -10.55999 -10.27355 -10.07553 -9.87904 -9.72155 -9.45711 -9.37293 -8.92647 -8.71172 -6.94827 -5.80826 -3.14089 -0.38547 -0.05159 1.93025 2.41769 2.83312 3.01453 3.13243 3.37848 3.42020 3.43114 3.45914 3.61378 3.72489 3.90442 4.37256 4.45632 4.50892 4.78881 4.87642 4.96990 5.15067 5.16928 5.27205 5.46794 5.59275 5.74766 5.82603 5.92565 6.09261 6.36200 6.56967 6.78225 7.22879 7.35541 7.44953 7.67471 7.92658 8.08257 8.14127 9.11770 9.71719 10.35027 11.31409 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002535 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.641804 B =11041.768197 C =11895.902133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.139 3.861 12 H 0.107 0.893 13 N -0.695 5.695 14 C 0.554 3.446 15 O -0.512 6.512 16 C -0.118 4.118 17 C -0.072 4.072 18 C 0.086 3.914 19 F -0.109 7.109 20 C 0.085 3.915 21 F -0.104 7.104 22 C 0.054 3.946 23 F -0.104 7.104 24 C 0.150 3.850 25 F -0.086 7.086 26 C 0.069 3.931 27 H 0.064 0.936 28 O -0.570 6.570 29 C 0.153 3.847 30 H 0.254 0.746 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.407 0.593 34 H 0.172 0.828 35 H 0.383 0.617 36 H 0.054 0.946 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -21.735 2.342 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.034 3.966 12 H 0.125 0.875 13 N -0.347 5.347 14 C 0.338 3.662 15 O -0.388 6.388 16 C -0.122 4.122 17 C -0.092 4.092 18 C 0.065 3.935 19 F -0.087 7.087 20 C 0.063 3.937 21 F -0.082 7.082 22 C 0.032 3.968 23 F -0.082 7.082 24 C 0.128 3.872 25 F -0.063 7.063 26 C 0.009 3.991 27 H 0.082 0.918 28 O -0.377 6.377 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.244 0.756 34 H 0.189 0.811 35 H 0.231 0.769 36 H 0.072 0.928 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.457 -21.611 1.480 21.666 hybrid contribution -0.092 0.605 0.526 0.807 sum -0.549 -21.006 2.006 21.108 Atomic orbital electron populations 1.69888 1.04917 1.25353 1.57321 1.24791 0.95790 0.97750 1.02052 0.86139 0.78443 0.82832 0.78016 1.21043 1.21568 1.21114 1.19049 0.90567 0.82104 1.43743 0.90243 1.44259 1.01184 0.99859 1.87364 1.21840 0.94566 0.85728 0.97502 1.22533 0.95878 0.78577 0.99656 0.87504 1.45655 1.44776 1.12114 1.32113 1.17566 0.80903 0.83785 0.83946 1.90916 1.45969 1.75859 1.26012 1.19955 0.99309 0.96035 0.96928 1.21268 0.98994 0.93628 0.95296 1.17036 0.96129 0.92343 0.87973 1.91626 1.77509 1.89006 1.50603 1.17405 0.99804 0.81179 0.95295 1.91621 1.93973 1.33594 1.88985 1.17036 0.96924 0.88286 0.94513 1.91626 1.68093 1.69903 1.78552 1.17261 0.93616 0.89647 0.86641 1.91710 1.76446 1.88652 1.49506 1.23560 0.95257 0.96984 0.83329 0.91769 1.86196 1.54782 1.67159 1.29588 1.21893 0.85623 0.87577 1.02176 0.93607 0.93448 0.95516 0.75616 0.81075 0.76891 0.92787 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.02 10.31 55.49 0.57 -25.45 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -14.75 3.39 -170.07 -0.58 -15.33 16 10 C 0.13 2.70 6.92 -2.53 -0.02 2.68 16 11 C 0.14 2.33 3.20 -65.64 -0.21 2.12 16 12 H 0.11 1.91 7.73 -51.93 -0.40 1.50 16 13 N -0.69 -9.18 5.13 -52.62 -0.27 -9.45 16 14 C 0.55 7.64 7.76 -12.45 -0.10 7.54 16 15 O -0.51 -9.11 15.08 5.29 0.08 -9.03 16 16 C -0.12 -1.22 5.88 -104.92 -0.62 -1.84 16 17 C -0.07 -0.54 9.51 -39.12 -0.37 -0.91 16 18 C 0.09 0.67 7.29 -39.45 -0.29 0.39 16 19 F -0.11 -0.90 17.17 2.25 0.04 -0.86 16 20 C 0.09 0.74 7.31 -39.20 -0.29 0.46 16 21 F -0.10 -0.97 17.08 2.25 0.04 -0.93 16 22 C 0.05 0.52 7.30 -39.38 -0.29 0.23 16 23 F -0.10 -1.09 17.08 2.25 0.04 -1.05 16 24 C 0.15 1.65 7.29 -38.92 -0.28 1.37 16 25 F -0.09 -1.16 15.45 2.25 0.03 -1.12 16 26 C 0.07 1.11 4.22 -24.76 -0.10 1.00 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 O -0.57 -7.87 12.15 -35.23 -0.43 -8.30 16 29 C 0.15 3.36 5.13 -3.07 -0.02 3.34 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.41 4.36 5.59 -40.82 -0.23 4.13 16 34 H 0.17 0.92 6.40 -52.49 -0.34 0.59 16 35 H 0.38 4.08 9.09 45.56 0.41 4.49 16 36 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.06 1.40 7.37 -51.93 -0.38 1.01 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -31.51 335.48 -5.40 -36.92 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.13 Total: 3.14 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.83 Total: 9.72 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.28 Total: -50.22 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.35 Total: -17.33 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.15 Total: -3.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.51 -5.40 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083981896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.163 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds