Wall clock time and date at job start Wed Apr 1 2020 04:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99584 * 2 1 4 4 H 1.48507 * 109.47109 * 239.99777 * 3 2 1 5 5 H 1.48499 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47363 * 120.00201 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 179.97438 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 N 1.46505 * 111.00202 * 204.91694 * 11 10 9 14 14 C 1.34778 * 120.00074 * 273.54598 * 13 11 10 15 15 O 1.21584 * 119.99885 * 0.02562 * 14 13 11 16 16 C 1.47578 * 119.99681 * 180.02562 * 14 13 11 17 17 C 1.39762 * 120.12603 * 359.72815 * 16 14 13 18 18 C 1.37939 * 119.91141 * 179.69693 * 17 16 14 19 19 F 1.35102 * 119.91182 * 180.31857 * 18 17 16 20 20 C 1.38889 * 120.16955 * 0.60036 * 18 17 16 21 21 F 1.35106 * 119.87588 * 179.69871 * 20 18 17 22 22 C 1.38613 * 120.25150 * 359.67313 * 20 18 17 23 23 F 1.35102 * 119.95898 * 180.02562 * 22 20 18 24 24 C 1.38402 * 120.07947 * 0.02562 * 22 20 18 25 25 F 1.35103 * 120.08211 * 179.97438 * 24 22 20 26 26 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 27 27 H 1.09002 * 110.85092 * 153.69981 * 26 11 10 28 28 O 1.42895 * 110.69130 * 277.05126 * 26 11 10 29 29 C 1.47018 * 125.64999 * 0.02562 * 9 7 2 30 30 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 32 32 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 33 33 H 0.96998 * 119.99743 * 93.55096 * 13 11 10 34 34 H 1.08001 * 120.03822 * 359.97438 * 17 16 14 35 35 H 0.96706 * 113.99347 * 174.82523 * 28 26 11 36 36 H 1.09002 * 109.88241 * 298.32312 * 29 9 7 37 37 H 1.09000 * 109.88049 * 59.33441 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9336 -3.7311 0.0005 11 6 0.8524 -4.6558 -0.6125 12 1 0.8580 -4.5954 -1.7008 13 7 1.0294 -6.0394 -0.1646 14 6 1.8622 -6.8625 -0.8320 15 8 2.4670 -6.4566 -1.8055 16 6 2.0401 -8.2564 -0.3810 17 6 1.3505 -8.7240 0.7411 18 6 1.5152 -10.0295 1.1550 19 9 0.8437 -10.4834 2.2359 20 6 2.3741 -10.8768 0.4669 21 9 2.5356 -12.1526 0.8811 22 6 3.0657 -10.4187 -0.6435 23 9 3.8992 -11.2481 -1.3088 24 6 2.9035 -9.1125 -1.0716 25 9 3.5780 -8.6658 -2.1536 26 6 -0.4518 -4.0434 -0.0301 27 1 -1.3012 -4.2478 -0.6820 28 8 -0.6953 -4.5352 1.2892 29 6 -0.1374 -2.5328 -0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 2.8336 -3.7402 -0.6143 32 1 2.1659 -4.0424 1.0190 33 1 0.5472 -6.3631 0.6123 34 1 0.6862 -8.0653 1.2807 35 1 -1.4530 -4.1250 1.7283 36 1 -0.5549 -2.0849 0.9013 37 1 -0.5571 -2.0494 -0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083981896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:01 Heat of formation + Delta-G solvation = -212.905360 kcal Electronic energy + Delta-G solvation = -30427.200706 eV Core-core repulsion = 25284.419761 eV Total energy + Delta-G solvation = -5142.780946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.18184 -50.73999 -50.13447 -49.65354 -41.50022 -39.91081 -38.98674 -36.41593 -35.62731 -33.75466 -32.36512 -31.52257 -30.19340 -28.78079 -26.63883 -25.61681 -24.61156 -22.70255 -22.09908 -21.57579 -20.16241 -19.71028 -19.52271 -19.05251 -18.36837 -18.25154 -18.03315 -17.73488 -17.17590 -17.06261 -16.83642 -16.56832 -16.45763 -16.14628 -15.98557 -15.95429 -15.76057 -15.66456 -15.56719 -14.79553 -14.65709 -14.45065 -14.27802 -13.99247 -13.60515 -13.28021 -13.16267 -12.95825 -12.79339 -12.72837 -12.25858 -12.14137 -11.93462 -11.84808 -11.33252 -10.85351 -10.74795 -10.51179 -10.23059 -10.08361 -8.92937 -7.87769 -5.22882 -1.16993 -0.77756 1.09248 1.46741 1.49221 1.54263 1.56969 1.87147 2.02687 2.36426 2.48907 2.70215 2.86801 2.97107 3.02360 3.20587 3.31492 3.63758 3.71506 3.85726 3.94473 3.98676 4.13763 4.23912 4.30343 4.43359 4.52785 4.69262 4.86388 4.98054 5.07735 5.32735 5.41220 5.50018 5.68101 6.16466 6.36775 6.86871 7.03986 7.08644 7.72794 8.35165 9.21658 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002535 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.641804 B =11041.768197 C =11895.902133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.130 3.870 11 C 0.152 3.848 12 H 0.097 0.903 13 N -0.680 5.680 14 C 0.557 3.443 15 O -0.556 6.556 16 C -0.121 4.121 17 C -0.044 4.044 18 C 0.100 3.900 19 F -0.105 7.105 20 C 0.096 3.904 21 F -0.105 7.105 22 C 0.055 3.945 23 F -0.110 7.110 24 C 0.139 3.861 25 F -0.106 7.106 26 C 0.096 3.904 27 H 0.097 0.903 28 O -0.563 6.563 29 C 0.156 3.844 30 H 0.249 0.751 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.423 0.577 34 H 0.201 0.799 35 H 0.400 0.600 36 H 0.028 0.972 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -23.292 3.735 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.348 5.348 10 C 0.003 3.997 11 C 0.046 3.954 12 H 0.114 0.886 13 N -0.333 5.333 14 C 0.344 3.656 15 O -0.435 6.435 16 C -0.125 4.125 17 C -0.063 4.063 18 C 0.080 3.920 19 F -0.083 7.083 20 C 0.074 3.926 21 F -0.083 7.083 22 C 0.033 3.967 23 F -0.089 7.089 24 C 0.117 3.883 25 F -0.084 7.084 26 C 0.036 3.964 27 H 0.115 0.885 28 O -0.372 6.372 29 C 0.031 3.969 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.218 0.782 35 H 0.252 0.748 36 H 0.047 0.953 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.404 -23.218 2.917 23.443 hybrid contribution 0.212 1.009 0.167 1.045 sum -1.192 -22.209 3.084 22.454 Atomic orbital electron populations 1.70083 1.05906 1.25553 1.57942 1.25551 0.96727 1.00632 1.02242 0.85187 0.77267 0.78988 0.78088 1.20680 1.21608 1.20448 1.19358 0.90891 0.83720 1.43624 0.90651 1.44530 1.02572 1.00527 1.87215 1.21902 0.95144 0.85160 0.97454 1.22094 0.94671 0.79788 0.98891 0.88555 1.45396 1.44861 1.10477 1.32546 1.17929 0.79788 0.84840 0.83071 1.90905 1.47605 1.76967 1.28048 1.19546 1.00662 0.94050 0.98275 1.21403 0.97665 0.93634 0.93584 1.16885 0.95469 0.92051 0.87632 1.91653 1.77328 1.88957 1.50376 1.17416 0.99351 0.81093 0.94725 1.91626 1.93946 1.33847 1.88897 1.16927 0.97185 0.87730 0.94834 1.91608 1.68426 1.69998 1.78838 1.17427 0.94057 0.90309 0.86463 1.91655 1.77094 1.88989 1.50702 1.23164 0.95788 0.92360 0.85138 0.88517 1.86155 1.56029 1.66604 1.28463 1.21776 0.84029 0.91698 0.99422 0.94127 0.95303 0.95267 0.73725 0.78187 0.74812 0.95339 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.18 10.31 21.65 0.22 -53.96 16 2 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 3 Si 0.98 45.12 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.25 -13.79 10.28 84.03 0.86 -12.93 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.62 -31.11 3.39 -691.97 -2.35 -33.46 16 10 C 0.13 5.39 6.92 86.86 0.60 5.99 16 11 C 0.15 4.92 3.20 46.47 0.15 5.07 16 12 H 0.10 3.40 7.73 -2.39 -0.02 3.38 16 13 N -0.68 -16.35 5.13 -438.64 -2.25 -18.61 16 14 C 0.56 14.62 7.76 86.71 0.67 15.30 16 15 O -0.56 -19.92 15.08 -3.98 -0.06 -19.98 16 16 C -0.12 -2.25 5.88 -20.06 -0.12 -2.37 16 17 C -0.04 -0.49 9.51 22.57 0.21 -0.28 16 18 C 0.10 1.22 7.29 22.35 0.16 1.38 16 19 F -0.10 -1.32 17.17 44.97 0.77 -0.55 16 20 C 0.10 1.44 7.31 22.52 0.16 1.60 16 21 F -0.11 -1.72 17.08 44.97 0.77 -0.96 16 22 C 0.05 0.98 7.30 22.40 0.16 1.15 16 23 F -0.11 -2.24 17.08 44.97 0.77 -1.47 16 24 C 0.14 2.93 7.29 22.70 0.17 3.09 16 25 F -0.11 -2.93 15.45 44.97 0.69 -2.23 16 26 C 0.10 2.89 4.22 31.87 0.13 3.03 16 27 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 28 O -0.56 -13.63 12.15 -148.98 -1.81 -15.44 16 29 C 0.16 6.92 5.13 86.73 0.44 7.37 16 30 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.42 7.38 5.59 -92.71 -0.52 6.86 16 34 H 0.20 1.10 6.40 -2.91 -0.02 1.08 16 35 H 0.40 7.14 9.09 -74.05 -0.67 6.46 16 36 H 0.03 1.39 7.42 -2.39 -0.02 1.37 16 37 H 0.02 1.25 7.37 -2.39 -0.02 1.23 16 Total: -1.00 -70.66 335.48 2.87 -67.79 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.00 Total: 6.09 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 4.08 Total: 25.63 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -4.38 Total: -106.02 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.87 Total: -35.42 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 3.00 Total: -5.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.66 2.87 -67.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083981896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.120 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds