Wall clock time and date at job start Wed Apr 1 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47077 * 270.00006 * 3 2 1 5 5 H 1.48495 * 109.47183 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.46986 * 150.00215 * 3 2 1 7 7 C 1.38656 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99951 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00060 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00217 * 185.17034 * 9 7 2 11 11 C 1.38895 * 120.06674 * 5.87100 * 10 9 7 12 12 C 1.38086 * 119.93053 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06529 * 359.75202 * 12 11 10 14 14 C 1.38271 * 120.14287 * 0.50712 * 13 12 11 15 15 C 1.50695 * 119.96942 * 179.77087 * 14 13 12 16 16 N 1.46505 * 109.47067 * 269.72290 * 15 14 13 17 17 S 1.65594 * 120.00452 * 163.50236 * 16 15 14 18 18 O 1.42099 * 106.40470 * 311.10840 * 17 16 15 19 19 O 1.42099 * 106.40596 * 178.18167 * 17 16 15 20 20 C 1.76204 * 107.21491 * 64.64279 * 17 16 15 21 21 C 1.38129 * 120.04011 * 243.61529 * 20 17 16 22 22 C 1.38265 * 120.07431 * 180.25562 * 21 20 17 23 23 C 1.38307 * 120.15048 * 359.44763 * 22 21 20 24 24 C 1.38084 * 120.07207 * 0.55641 * 23 22 21 25 25 C 1.38896 * 120.03759 * 63.60062 * 20 17 16 26 26 N 1.39671 * 120.07203 * 359.97438 * 25 20 17 27 27 C 1.38121 * 120.06562 * 359.48970 * 14 13 12 28 28 H 0.97007 * 119.99521 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03729 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.96546 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.93096 * 180.27723 * 13 12 11 32 32 H 1.09000 * 109.47361 * 149.72518 * 15 14 13 33 33 H 1.08994 * 109.47456 * 29.72067 * 15 14 13 34 34 H 0.97003 * 119.99973 * 343.50617 * 16 15 14 35 35 H 1.07998 * 119.95763 * 359.97438 * 21 20 17 36 36 H 1.08001 * 119.92150 * 179.70891 * 22 21 20 37 37 H 1.07999 * 119.96168 * 180.27392 * 23 22 21 38 38 H 1.08002 * 120.03848 * 179.69803 * 24 23 22 39 39 H 0.96997 * 120.00157 * 4.69110 * 26 25 20 40 40 H 0.97005 * 120.00129 * 184.68095 * 26 25 20 41 41 H 1.08000 * 120.03666 * 180.23203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3570 -1.2009 0.0000 10 6 3.9733 -2.4055 -0.1096 11 6 3.2239 -3.5524 -0.3379 12 6 3.8538 -4.7761 -0.4494 13 6 5.2300 -4.8598 -0.3391 14 6 5.9785 -3.7206 -0.1065 15 6 7.4771 -3.8170 0.0182 16 7 7.8373 -4.0369 1.4212 17 16 9.3507 -4.5841 1.8116 18 8 9.6027 -5.7015 0.9707 19 8 9.3993 -4.6522 3.2301 20 6 10.4966 -3.3337 1.3339 21 6 11.4348 -3.5934 0.3540 22 6 12.3378 -2.6145 -0.0176 23 6 12.2976 -1.3687 0.5819 24 6 11.3624 -1.1024 1.5622 25 6 10.4573 -2.0856 1.9422 26 7 9.5094 -1.8193 2.9328 27 6 5.3543 -2.4936 0.0060 28 1 -0.4850 0.8401 0.0004 29 1 2.1497 -3.4870 -0.4289 30 1 3.2716 -5.6683 -0.6274 31 1 5.7209 -5.8174 -0.4311 32 1 7.9313 -2.8902 -0.3324 33 1 7.8391 -4.6497 -0.5846 34 1 7.1892 -3.8621 2.1214 35 1 11.4660 -4.5637 -0.1192 36 1 13.0733 -2.8217 -0.7808 37 1 13.0015 -0.6049 0.2861 38 1 11.3347 -0.1310 2.0335 39 1 8.9226 -2.5257 3.2449 40 1 9.4380 -0.9279 3.3087 41 1 5.9397 -1.6036 0.1839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116635491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:23 Heat of formation + Delta-G solvation = -71.498805 kcal Electronic energy + Delta-G solvation = -27510.423604 eV Core-core repulsion = 23481.844423 eV Total energy + Delta-G solvation = -4028.579181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94381 -40.32235 -38.78487 -38.42758 -36.99984 -36.16638 -35.47629 -34.45068 -32.14874 -31.92152 -30.87357 -29.64863 -27.38724 -26.48926 -24.31299 -23.33239 -23.25715 -22.34117 -20.62836 -19.72704 -19.22057 -19.02016 -18.43086 -18.00656 -17.70919 -16.95088 -16.80077 -16.56617 -15.96508 -15.86096 -15.63825 -15.59605 -15.16408 -15.07686 -14.83643 -14.60969 -14.40094 -14.24177 -14.06947 -13.72422 -13.45107 -13.35275 -13.20263 -13.12636 -13.01483 -12.51585 -12.46131 -12.40606 -12.26654 -11.93165 -11.78501 -11.69968 -11.34357 -10.91938 -10.54262 -10.32679 -9.77708 -9.11145 -8.77883 -8.50164 -6.23010 -0.67148 -0.01233 0.43902 0.57845 0.66627 1.31842 1.35754 1.51591 2.00278 2.27546 2.54766 2.71659 2.75556 2.82992 3.03870 3.10619 3.34889 3.74549 3.87984 4.07871 4.11560 4.27491 4.37347 4.42555 4.45596 4.48697 4.53706 4.67841 4.69622 4.87215 4.93095 4.94476 5.03306 5.21988 5.32687 5.38925 5.55191 5.64389 5.71486 5.74730 5.82721 5.89700 5.95643 6.21289 6.27215 6.61781 6.84303 7.58081 8.61559 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.002937 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.261107 B = 9529.681109 C =10821.749431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.398 4.398 8 H 0.080 0.920 9 O -0.243 6.243 10 C 0.118 3.882 11 C -0.231 4.231 12 C -0.077 4.077 13 C -0.165 4.165 14 C -0.054 4.054 15 C 0.169 3.831 16 N -1.109 6.109 17 S 2.715 3.285 18 O -0.983 6.983 19 O -0.990 6.990 20 C -0.765 4.765 21 C 0.004 3.996 22 C -0.201 4.201 23 C -0.019 4.019 24 C -0.224 4.224 25 C 0.301 3.699 26 N -0.865 5.865 27 C -0.167 4.167 28 H 0.284 0.716 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.424 0.576 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.399 0.601 40 H 0.419 0.581 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.685 -3.807 1.278 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.097 0.903 9 O -0.151 6.151 10 C 0.069 3.931 11 C -0.250 4.250 12 C -0.095 4.095 13 C -0.184 4.184 14 C -0.055 4.055 15 C 0.044 3.956 16 N -0.870 5.870 17 S 2.808 3.192 18 O -0.973 6.973 19 O -0.980 6.980 20 C -0.861 4.861 21 C -0.016 4.016 22 C -0.222 4.222 23 C -0.038 4.038 24 C -0.247 4.247 25 C 0.190 3.810 26 N -0.405 5.405 27 C -0.187 4.187 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.260 0.740 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.166 0.834 39 H 0.230 0.770 40 H 0.250 0.750 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 25.905 -4.323 1.567 26.310 hybrid contribution -1.183 1.335 0.342 1.816 sum 24.722 -2.988 1.909 24.975 Atomic orbital electron populations 1.69735 1.07009 1.29601 1.50186 1.25287 0.95847 1.02217 0.95550 0.85209 0.78881 0.77346 0.79233 1.19195 1.19424 1.18356 1.20672 0.78136 0.96024 1.52565 0.90275 1.83517 1.21099 1.27288 1.83176 1.19610 0.93082 0.85176 0.95208 1.21388 1.00353 0.93804 1.09475 1.21128 0.95300 0.96249 0.96830 1.21102 0.93212 0.98822 1.05287 1.19472 0.95043 0.91855 0.99169 1.20196 0.90748 1.03646 0.81003 1.55404 1.30550 1.86353 1.14669 1.00880 0.72416 0.73551 0.72314 1.93519 1.85127 1.49353 1.69331 1.93544 1.86742 1.87135 1.30552 1.29954 1.23850 1.14667 1.17602 1.20944 0.90315 0.99939 0.90380 1.21378 1.02347 0.94018 1.04444 1.21618 0.94554 0.96773 0.90854 1.21069 0.99273 1.00146 1.04207 1.17399 0.87042 0.91587 0.85018 1.43047 1.38823 1.16661 1.41961 1.20304 0.90385 0.99030 1.08997 0.90604 0.87482 0.84240 0.83576 0.89359 0.87931 0.74040 0.83696 0.83129 0.82425 0.83395 0.77040 0.74976 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 13.96 21.61 0.30 -54.14 16 2 C 0.01 0.53 5.49 84.83 0.47 0.99 16 3 Si 0.97 44.07 28.62 68.60 1.96 46.03 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.40 -22.79 9.90 67.92 0.67 -22.12 16 8 H 0.08 4.78 5.53 -2.91 -0.02 4.76 16 9 O -0.24 -12.62 8.59 -22.71 -0.20 -12.82 16 10 C 0.12 5.18 6.65 22.58 0.15 5.33 16 11 C -0.23 -9.62 9.13 22.39 0.20 -9.41 16 12 C -0.08 -2.48 10.04 22.25 0.22 -2.26 16 13 C -0.17 -4.55 9.70 22.30 0.22 -4.34 16 14 C -0.05 -1.47 5.28 -19.89 -0.10 -1.57 16 15 C 0.17 3.45 6.35 85.63 0.54 3.99 16 16 N -1.11 -21.69 5.65 -190.79 -1.08 -22.77 16 17 S 2.72 59.55 4.99 -56.49 -0.28 59.26 16 18 O -0.98 -25.90 16.44 -128.00 -2.10 -28.00 16 19 O -0.99 -26.18 16.32 -128.00 -2.09 -28.27 16 20 C -0.76 -15.17 5.89 22.40 0.13 -15.04 16 21 C 0.00 0.07 9.54 22.25 0.21 0.28 16 22 C -0.20 -2.78 10.04 22.29 0.22 -2.56 16 23 C -0.02 -0.23 10.04 22.25 0.22 -0.01 16 24 C -0.22 -3.26 9.90 22.40 0.22 -3.04 16 25 C 0.30 5.45 6.72 38.22 0.26 5.71 16 26 N -0.87 -13.71 8.94 -51.37 -0.46 -14.17 16 27 C -0.17 -5.74 9.65 22.39 0.22 -5.53 16 28 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 29 H 0.11 4.99 5.72 -2.91 -0.02 4.97 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.10 1.85 7.67 -2.39 -0.02 1.83 16 34 H 0.42 7.81 8.65 -96.75 -0.84 6.97 16 35 H 0.15 2.33 7.34 -2.91 -0.02 2.31 16 36 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.40 6.84 5.91 -92.71 -0.55 6.30 16 40 H 0.42 4.59 8.85 -92.70 -0.82 3.77 16 41 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -74.28 363.54 -1.17 -75.45 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -1.09 Total: 28.98 kcal Atomic # 6 Polarization: -53.42 SS G_CDS: 3.86 Total: -49.56 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -1.23 Total: -91.08 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -4.39 Total: -69.09 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.96 Total: 46.03 kcal Atomic # 16 Polarization: 59.55 SS G_CDS: -0.28 Total: 59.26 kcal Total: -74.28 -1.17 -75.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116635491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.950 kcal (2) G-P(sol) polarization free energy of solvation -74.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds