Wall clock time and date at job start Wed Apr 1 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32439 * 118.53309 * 2 1 4 4 C 1.32324 * 121.52998 * 180.28498 * 3 2 1 5 5 O 1.35280 * 120.86887 * 180.02562 * 4 3 2 6 6 C 1.41585 * 118.25418 * 359.97438 * 4 3 2 7 7 C 1.40094 * 121.88845 * 179.97438 * 6 4 3 8 8 C 1.36057 * 119.87159 * 179.97438 * 7 6 4 9 9 C 1.40466 * 120.77628 * 0.04479 * 8 7 6 10 10 C 1.47887 * 119.71935 * 179.97438 * 9 8 7 11 11 O 1.21447 * 119.99842 * 180.02562 * 10 9 8 12 12 O 1.34694 * 120.00293 * 0.02562 * 10 9 8 13 13 C 1.45197 * 117.00244 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47372 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47145 * 180.02562 * 14 13 12 16 16 S 1.80999 * 109.46869 * 179.97438 * 15 14 13 17 17 C 1.76207 * 99.99889 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99618 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47129 * 90.00412 * 21 19 17 23 23 H 1.48499 * 109.47180 * 210.00223 * 21 19 17 24 24 H 1.48503 * 109.47426 * 330.00442 * 21 19 17 25 25 C 1.38594 * 120.55651 * 0.02562 * 9 8 7 26 26 C 1.40122 * 119.36105 * 359.97438 * 25 9 8 27 27 N 1.31114 * 118.53783 * 180.26065 * 2 1 3 28 28 H 1.08994 * 109.47300 * 269.73645 * 1 2 3 29 29 H 1.08997 * 109.46954 * 29.74232 * 1 2 3 30 30 H 1.09004 * 109.46614 * 149.73537 * 1 2 3 31 31 H 0.96696 * 114.00212 * 269.97346 * 5 4 3 32 32 H 1.08000 * 120.06136 * 359.95887 * 7 6 4 33 33 H 1.08000 * 119.61363 * 180.02562 * 8 7 6 34 34 H 1.08998 * 109.47110 * 300.00870 * 13 12 10 35 35 H 1.08998 * 109.46886 * 60.00396 * 13 12 10 36 36 H 1.08996 * 109.46723 * 300.00601 * 14 13 12 37 37 H 1.09001 * 109.46841 * 59.99699 * 14 13 12 38 38 H 1.08998 * 109.47179 * 300.00405 * 15 14 13 39 39 H 1.09006 * 109.46895 * 60.00354 * 15 14 13 40 40 H 0.97002 * 120.00198 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.32174 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1397 1.1635 0.0000 4 6 3.4611 1.2327 -0.0056 5 8 4.0935 2.4286 -0.0050 6 6 4.1956 0.0223 -0.0111 7 6 5.5965 0.0067 -0.0178 8 6 6.2609 -1.1805 -0.0224 9 6 5.5588 -2.3971 -0.0216 10 6 6.3047 -3.6741 -0.0272 11 8 5.7028 -4.7289 -0.0270 12 8 7.6517 -3.6673 -0.0327 13 6 8.3174 -4.9577 -0.0375 14 6 9.8332 -4.7496 -0.0426 15 6 10.5346 -6.1092 -0.0484 16 16 12.3277 -5.8630 -0.0552 17 6 12.8669 -7.5405 -0.0617 18 1 12.1417 -8.3408 -0.0611 19 6 14.2236 -7.8334 -0.0686 20 7 15.1075 -6.8580 -0.0699 21 14 14.7952 -9.6117 -0.0762 22 1 14.9404 -10.0790 -1.4783 23 1 16.1041 -9.7139 0.6177 24 1 13.7954 -10.4561 0.6259 25 6 4.1730 -2.4109 -0.0165 26 6 3.4739 -1.1965 -0.0117 27 7 2.1335 -1.1518 -0.0052 28 1 -0.3633 -0.0047 1.0276 29 1 -0.3633 0.8923 -0.5098 30 1 -0.3633 -0.8877 -0.5180 31 1 4.2739 2.7786 -0.8882 32 1 6.1478 0.9354 -0.0195 33 1 7.3409 -1.1877 -0.0271 34 1 8.0308 -5.5176 0.8527 35 1 8.0238 -5.5146 -0.9272 36 1 10.1199 -4.1894 -0.9326 37 1 10.1264 -4.1927 0.8473 38 1 10.2478 -6.6698 0.8414 39 1 10.2412 -6.6657 -0.9386 40 1 16.0557 -7.0626 -0.0743 41 1 3.6369 -3.3485 -0.0163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119432949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:20 Heat of formation + Delta-G solvation = -69.521482 kcal Electronic energy + Delta-G solvation = -25592.581246 eV Core-core repulsion = 21564.087808 eV Total energy + Delta-G solvation = -4028.493438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.10520 -40.65352 -38.55995 -38.20323 -36.81295 -33.89985 -33.60018 -32.67283 -32.46955 -31.55308 -28.88849 -27.15518 -25.83709 -25.28984 -23.77724 -23.07696 -21.84989 -21.40568 -19.63220 -19.19996 -18.50214 -17.64780 -17.40570 -16.82872 -16.75204 -16.56756 -15.80655 -15.15666 -14.84720 -14.77517 -14.73924 -14.55579 -14.09184 -13.79463 -13.63481 -13.40227 -13.17961 -12.93374 -12.90547 -12.73911 -12.29604 -12.19606 -12.16394 -11.42519 -11.41240 -11.21401 -11.19081 -11.05030 -10.99485 -10.84298 -10.67748 -10.38399 -9.92116 -9.87609 -9.67759 -9.10443 -8.91483 -8.39827 -6.60011 -6.27739 -3.99102 -0.61147 -0.13698 1.05655 1.77591 2.24116 2.52036 2.68865 3.18632 3.19787 3.26794 3.36094 3.36941 3.49200 3.64396 3.95147 4.16743 4.17728 4.21148 4.47146 4.58567 4.70619 4.96237 5.03336 5.06186 5.09057 5.09242 5.11345 5.24160 5.32767 5.35879 5.41203 5.53248 5.62436 5.71036 5.71107 5.80879 5.91109 6.06335 6.27656 6.36540 6.38850 6.60454 6.66799 7.44953 7.48953 7.56295 8.31905 9.18838 10.80394 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.001498 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.059848 B =18692.734637 C =19528.197955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.344 3.656 3 N -0.538 5.538 4 C 0.411 3.589 5 O -0.467 6.467 6 C -0.162 4.162 7 C -0.074 4.074 8 C -0.079 4.079 9 C -0.071 4.071 10 C 0.505 3.495 11 O -0.496 6.496 12 O -0.347 6.347 13 C 0.073 3.927 14 C -0.098 4.098 15 C -0.115 4.115 16 S -0.123 6.123 17 C -0.519 4.519 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.919 3.081 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.033 4.033 26 C 0.164 3.836 27 N -0.502 5.502 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.414 0.586 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.267 18.394 -1.637 32.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 N -0.264 5.264 4 C 0.209 3.791 5 O -0.275 6.275 6 C -0.168 4.168 7 C -0.095 4.095 8 C -0.097 4.097 9 C -0.075 4.075 10 C 0.348 3.652 11 O -0.384 6.384 12 O -0.263 6.263 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.264 4.264 16 S 0.105 5.895 17 C -0.668 4.668 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.052 4.052 26 C 0.038 3.962 27 N -0.218 5.218 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.276 0.724 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -26.579 18.881 -1.043 32.619 hybrid contribution 0.741 -2.197 -0.416 2.356 sum -25.838 16.684 -1.459 30.791 Atomic orbital electron populations 1.20658 0.84960 1.04569 1.04335 1.23034 0.98088 0.81730 0.89567 1.67742 1.10092 1.31456 1.17096 1.19623 0.86697 0.84908 0.87839 1.84637 1.75881 1.32401 1.34594 1.19771 0.96554 0.94226 1.06232 1.20844 0.91529 0.99443 0.97652 1.21276 1.01924 0.90390 0.96126 1.19289 0.92700 0.91914 1.03636 1.20954 0.81788 0.88915 0.73534 1.90867 1.69864 1.32850 1.44836 1.86500 1.19261 1.37208 1.83310 1.23378 0.92854 0.80989 1.02950 1.21297 0.89658 0.98247 1.04421 1.23184 1.02222 0.97565 1.03419 1.84644 0.94084 1.13855 1.96891 1.22700 0.94477 0.90796 1.58781 0.90819 1.25010 0.95619 0.98593 0.94470 1.70013 1.01760 1.31618 1.47073 0.86149 0.78150 0.82729 0.78415 1.20228 1.20710 1.19652 1.21161 0.91943 0.97764 0.94290 1.18629 0.89331 0.92091 0.96193 1.68616 1.07939 1.29357 1.15915 0.89196 0.89283 0.89099 0.72421 0.83330 0.82832 0.90816 0.90812 0.90240 0.90226 0.91670 0.91678 0.92224 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.28 36.01 0.37 -0.09 16 2 C 0.34 3.09 7.62 -157.21 -1.20 1.89 16 3 N -0.54 -4.97 10.30 -10.38 -0.11 -5.08 16 4 C 0.41 3.33 7.89 -16.06 -0.13 3.21 16 5 O -0.47 -2.53 12.91 -17.53 -0.23 -2.76 16 6 C -0.16 -1.39 5.76 -106.62 -0.61 -2.00 16 7 C -0.07 -0.50 9.58 -39.67 -0.38 -0.88 16 8 C -0.08 -0.62 9.52 -39.53 -0.38 -1.00 16 9 C -0.07 -0.71 5.87 -104.98 -0.62 -1.33 16 10 C 0.50 6.26 7.90 34.68 0.27 6.54 16 11 O -0.50 -7.36 16.09 -19.23 -0.31 -7.67 16 12 O -0.35 -4.35 9.43 -40.48 -0.38 -4.73 16 13 C 0.07 0.98 5.47 37.16 0.20 1.18 16 14 C -0.10 -1.49 5.60 -26.73 -0.15 -1.64 16 15 C -0.12 -2.22 5.67 37.16 0.21 -2.01 16 16 S -0.12 -3.12 21.44 -107.50 -2.30 -5.42 16 17 C -0.52 -14.63 9.50 30.94 0.29 -14.34 16 18 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 19 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.03 -0.33 9.58 -38.74 -0.37 -0.70 16 26 C 0.16 1.66 6.61 -84.86 -0.56 1.10 16 27 N -0.50 -5.20 10.32 -8.81 -0.09 -5.29 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.41 0.04 9.06 45.56 0.41 0.46 16 32 H 0.15 0.61 7.70 -52.49 -0.40 0.21 16 33 H 0.15 1.03 7.57 -52.49 -0.40 0.63 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.16 1.61 7.62 -52.48 -0.40 1.21 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -35.02 378.25 -9.28 -44.30 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.14 Total: -2.33 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.14 Total: -8.14 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.54 Total: -35.17 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.92 Total: -15.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.02 -9.28 -44.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119432949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.222 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds