Wall clock time and date at job start Wed Apr 1 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47053 * 2 1 4 4 C 1.52998 * 109.46852 * 119.99721 * 2 1 3 5 5 C 1.53007 * 109.46975 * 184.99768 * 4 2 1 6 6 H 1.08994 * 109.47155 * 305.00020 * 5 4 2 7 7 C 1.52998 * 109.47211 * 184.99985 * 5 4 2 8 8 N 1.46506 * 109.46951 * 65.00342 * 5 4 2 9 9 C 1.34777 * 119.99880 * 205.00281 * 8 5 4 10 10 O 1.21624 * 119.99634 * 0.26811 * 9 8 5 11 11 C 1.47256 * 119.99885 * 179.97438 * 9 8 5 12 12 C 1.41443 * 126.44096 * 89.68901 * 11 9 8 13 13 Cl 1.73598 * 125.99339 * 359.97438 * 12 11 9 14 14 N 1.30501 * 108.00958 * 179.81739 * 12 11 9 15 15 N 1.39917 * 108.95476 * 0.44157 * 14 12 11 16 16 C 1.46507 * 125.73171 * 179.67899 * 15 14 12 17 17 C 1.34324 * 108.53802 * 359.71513 * 15 14 12 18 18 Cl 1.73596 * 126.30791 * 179.97438 * 17 15 14 19 19 N 1.46499 * 109.47213 * 239.99517 * 2 1 3 20 20 C 1.36935 * 119.99778 * 85.00235 * 19 2 1 21 21 H 1.08004 * 120.00062 * 359.97438 * 20 19 2 22 22 C 1.38811 * 120.00118 * 180.02562 * 20 19 2 23 23 N 1.31621 * 120.00523 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99899 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47106 * 90.00363 * 24 22 20 26 26 H 1.48491 * 109.47089 * 210.00678 * 24 22 20 27 27 H 1.48505 * 109.46986 * 330.00706 * 24 22 20 28 28 H 1.08995 * 109.47467 * 60.00232 * 1 2 3 29 29 H 1.08998 * 109.47525 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47021 * 300.00484 * 1 2 3 31 31 H 1.09001 * 109.47625 * 65.00342 * 4 2 1 32 32 H 1.09007 * 109.47499 * 304.99612 * 4 2 1 33 33 H 1.09007 * 109.47327 * 300.00223 * 7 5 4 34 34 H 1.09002 * 109.47080 * 59.99700 * 7 5 4 35 35 H 1.08993 * 109.47207 * 180.02562 * 7 5 4 36 36 H 0.96999 * 120.00076 * 24.99260 * 8 5 4 37 37 H 1.08996 * 109.47004 * 270.04276 * 16 15 14 38 38 H 1.08997 * 109.46866 * 30.04408 * 16 15 14 39 39 H 1.08994 * 109.47323 * 150.04178 * 16 15 14 40 40 H 0.96997 * 119.99993 * 265.00082 * 19 2 1 41 41 H 0.96993 * 120.00069 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 1 3.9953 -0.9923 0.3869 7 6 4.0851 -1.4382 2.4925 8 7 3.9480 0.7894 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9360 0.4328 0.5677 11 6 5.5461 2.6236 1.2658 12 6 6.1893 3.1820 2.3950 13 17 6.6679 2.3224 3.8253 14 7 6.3628 4.4559 2.1716 15 7 5.8386 4.7723 0.9135 16 6 5.8324 6.1022 0.2990 17 6 5.3413 3.6520 0.3641 18 17 4.5811 3.5196 -1.1909 19 7 2.0183 -0.6907 -1.1961 20 6 2.1492 -0.0076 -2.3757 21 1 1.8919 1.0402 -2.4243 22 6 2.6114 -0.6621 -3.5092 23 7 2.7376 -0.0055 -4.6429 24 14 3.0556 -2.4747 -3.4252 25 1 1.8583 -3.2931 -3.7441 26 1 4.1307 -2.7668 -4.4070 27 1 3.5310 -2.8049 -2.0576 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1371 33 1 3.6545 -1.0592 3.4195 34 1 3.8000 -2.4818 2.3596 35 1 5.1713 -1.3610 2.5387 36 1 3.3284 1.4129 1.9027 37 1 4.9179 6.6264 0.5766 38 1 6.6959 6.6680 0.6486 39 1 5.8787 6.0017 -0.7853 40 1 2.2490 -1.6318 -1.1525 41 1 3.0609 -0.4628 -5.4348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135658478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:34 Heat of formation + Delta-G solvation = 42.495318 kcal Electronic energy + Delta-G solvation = -26948.469094 eV Core-core repulsion = 22952.649264 eV Total energy + Delta-G solvation = -3995.819830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.70179 -39.28064 -37.19612 -36.94768 -36.84364 -34.49740 -33.62216 -32.13428 -31.22012 -30.01282 -29.16770 -27.36595 -26.36630 -23.51172 -23.13763 -21.61632 -21.09494 -20.29783 -19.77628 -18.24460 -17.52677 -16.68316 -16.31817 -15.85884 -15.40534 -15.02772 -14.75330 -14.19296 -14.14133 -13.69719 -13.55843 -13.51449 -13.08250 -12.90112 -12.60534 -12.59106 -12.36158 -12.14448 -12.01684 -11.94080 -11.68419 -11.64919 -11.59319 -11.18926 -10.90602 -10.85934 -10.63607 -10.43695 -10.23606 -9.91594 -9.74565 -9.55066 -9.52120 -8.93077 -8.86096 -8.72474 -7.19276 -5.70494 -3.04277 0.96629 1.10215 1.33504 1.87042 2.54562 2.77537 3.44449 3.47968 3.50208 3.52823 4.18626 4.67053 4.76284 4.87023 4.88319 4.93377 5.05079 5.08047 5.29706 5.36394 5.56623 5.59808 5.63604 5.81425 5.87310 5.93388 6.05390 6.10396 6.22086 6.31030 6.35871 6.47086 6.59140 6.77522 6.87174 6.88379 7.01691 7.77245 8.04654 8.48363 8.50834 9.27634 10.01036 10.20435 11.48236 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.004420 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.337056 B = 6332.936280 C = 7548.975522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.055 0.945 4 C -0.134 4.134 5 C 0.143 3.857 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.704 5.704 9 C 0.600 3.400 10 O -0.516 6.516 11 C -0.245 4.245 12 C 0.159 3.841 13 Cl 0.027 6.973 14 N -0.262 5.262 15 N -0.341 5.341 16 C 0.091 3.909 17 C 0.164 3.836 18 Cl 0.056 6.944 19 N -0.745 5.745 20 C -0.232 4.232 21 H 0.086 0.914 22 C 0.006 3.994 23 N -0.937 5.937 24 Si 0.880 3.120 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.275 1.275 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.360 0.640 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 10.112 16.977 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.039 3.961 6 H 0.120 0.880 7 C -0.221 4.221 8 N -0.354 5.354 9 C 0.382 3.618 10 O -0.390 6.390 11 C -0.262 4.262 12 C -0.033 4.033 13 Cl 0.054 6.946 14 N -0.088 5.088 15 N -0.125 5.125 16 C -0.049 4.049 17 C 0.007 3.993 18 Cl 0.084 6.916 19 N -0.388 5.388 20 C -0.362 4.362 21 H 0.104 0.896 22 C -0.190 4.190 23 N -0.585 5.585 24 Si 0.711 3.289 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.201 1.201 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.193 0.807 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.396 10.837 16.789 20.461 hybrid contribution -0.298 -1.641 -0.306 1.696 sum 4.098 9.196 16.483 19.315 Atomic orbital electron populations 1.22417 0.99047 1.00801 1.00247 1.20194 0.91683 0.95882 0.85533 0.92729 1.22222 0.93758 1.02159 0.99176 1.21050 0.95073 0.80135 0.99810 0.88025 1.22195 1.01795 0.99946 0.98115 1.45876 1.15886 1.11540 1.62114 1.16815 0.82150 0.84878 0.77936 1.90826 1.51262 1.55196 1.41715 1.19729 1.15476 0.95574 0.95405 1.22353 0.99363 0.90906 0.90629 1.98420 1.90184 1.72808 1.33145 1.77249 1.21319 1.13508 0.96715 1.48261 1.44118 1.07867 1.12300 1.22202 1.05250 0.78632 0.98843 1.22224 0.98302 0.87450 0.91357 1.98574 1.77106 1.97110 1.18800 1.42774 1.79537 1.09358 1.07140 1.18953 1.36487 0.95294 0.85467 0.89576 1.24603 1.01479 0.97274 0.95614 1.69683 1.53073 1.35482 1.00258 0.86606 0.77929 0.87154 0.77241 1.21377 1.21918 1.20140 0.92493 0.93646 0.94421 0.90659 0.91499 0.92817 0.91833 0.92278 0.77003 0.89261 0.87990 0.88318 0.80744 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.18 3.12 2.84 -67.93 -0.19 2.93 16 3 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 4 C -0.13 -1.88 4.29 -26.73 -0.11 -2.00 16 5 C 0.14 2.20 2.52 -67.93 -0.17 2.03 16 6 H 0.10 2.01 7.05 -51.93 -0.37 1.65 16 7 C -0.16 -2.10 9.48 37.16 0.35 -1.74 16 8 N -0.70 -10.42 4.44 -54.93 -0.24 -10.66 16 9 C 0.60 10.40 7.36 -12.60 -0.09 10.30 16 10 O -0.52 -11.08 16.77 5.26 0.09 -10.99 16 11 C -0.25 -3.78 5.89 -104.99 -0.62 -4.39 16 12 C 0.16 2.21 7.89 -16.90 -0.13 2.08 16 13 Cl 0.03 0.32 29.19 -51.86 -1.51 -1.19 16 14 N -0.26 -3.46 12.50 33.18 0.41 -3.04 16 15 N -0.34 -4.05 3.98 -64.32 -0.26 -4.31 16 16 C 0.09 0.63 11.28 59.85 0.67 1.31 16 17 C 0.16 2.33 7.53 -16.44 -0.12 2.21 16 18 Cl 0.06 0.86 28.56 -51.86 -1.48 -0.62 16 19 N -0.74 -16.84 4.30 -53.43 -0.23 -17.07 16 20 C -0.23 -6.34 10.41 -15.06 -0.16 -6.50 16 21 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.94 -29.30 13.97 55.49 0.78 -28.52 16 24 Si 0.88 22.55 27.74 -169.99 -4.71 17.83 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 4.86 8.59 -40.82 -0.35 4.51 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.60 7.77 -51.93 -0.40 0.19 16 40 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -34.63 381.06 -7.30 -41.93 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.56 Total: 6.95 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.32 Total: 3.95 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.46 Total: -63.60 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Atomic # 17 Polarization: 1.18 SS G_CDS: -2.99 Total: -1.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.63 -7.30 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135658478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.424 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds