Wall clock time and date at job start Wed Apr 1 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31810 * 119.67056 * 2 1 4 4 C 1.31859 * 121.80198 * 179.97438 * 3 2 1 5 5 S 1.76198 * 119.53164 * 180.02562 * 4 3 2 6 6 C 1.81400 * 104.45104 * 90.00080 * 5 4 3 7 7 O 1.42104 * 104.27983 * 206.07223 * 5 4 3 8 8 O 1.42099 * 104.27830 * 333.93231 * 5 4 3 9 9 C 1.38277 * 120.93685 * 359.97438 * 4 3 2 10 10 C 1.38487 * 119.24081 * 359.78787 * 9 4 3 11 11 C 1.38912 * 119.67578 * 179.97438 * 2 1 3 12 12 N 1.39709 * 120.49608 * 0.02562 * 11 2 1 13 13 C 1.39787 * 119.99905 * 175.16951 * 12 11 2 14 14 C 1.38776 * 120.10357 * 254.79974 * 13 12 11 15 15 C 1.38183 * 119.98924 * 180.02562 * 14 13 12 16 16 C 1.38353 * 120.20785 * 0.02562 * 15 14 13 17 17 C 1.38176 * 120.21249 * 359.68089 * 16 15 14 18 18 C 1.38730 * 120.00738 * 0.59261 * 17 16 15 19 19 O 1.35778 * 120.10593 * 179.69938 * 18 17 16 20 20 C 1.34811 * 117.00137 * 5.64114 * 19 18 17 21 21 H 1.08005 * 119.99765 * 354.92545 * 20 19 18 22 22 C 1.38621 * 120.00197 * 174.65449 * 20 19 18 23 23 N 1.31581 * 119.99770 * 0.27268 * 22 20 19 24 24 Si 1.86800 * 119.99929 * 180.27311 * 22 20 19 25 25 H 1.48504 * 109.46920 * 60.00137 * 24 22 20 26 26 H 1.48507 * 109.46911 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47291 * 299.99828 * 24 22 20 28 28 H 1.08996 * 109.47539 * 270.01996 * 1 2 3 29 29 H 1.09000 * 109.47105 * 30.02376 * 1 2 3 30 30 H 1.09001 * 109.46479 * 150.02409 * 1 2 3 31 31 H 1.09001 * 109.46897 * 60.00035 * 6 5 4 32 32 H 1.09004 * 109.47178 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47368 * 300.00358 * 6 5 4 34 34 H 1.07995 * 120.38327 * 180.02562 * 9 4 3 35 35 H 1.08005 * 120.82271 * 180.23467 * 10 9 4 36 36 H 0.96994 * 119.99588 * 355.16372 * 12 11 2 37 37 H 1.08003 * 120.00612 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.89802 * 179.97438 * 15 14 13 39 39 H 1.07993 * 119.89424 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.00326 * 180.31912 * 17 16 15 41 41 H 0.97004 * 119.99321 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1453 0.0000 4 6 3.4772 1.1943 0.0005 5 16 4.2880 2.7586 0.0012 6 6 4.4957 3.1601 1.7579 7 8 5.5478 2.5007 -0.6037 8 8 3.3513 3.6392 -0.6041 9 6 4.2316 0.0355 0.0016 10 6 3.5881 -1.1907 0.0066 11 6 2.1947 -1.2069 0.0005 12 7 1.4998 -2.4189 0.0005 13 6 2.1987 -3.6253 -0.1009 14 6 2.1909 -4.3362 -1.2927 15 6 2.8821 -5.5287 -1.3901 16 6 3.5829 -6.0181 -0.3022 17 6 3.6014 -5.3141 0.8867 18 6 2.9059 -4.1188 0.9962 19 8 2.9177 -3.4285 2.1653 20 6 3.7176 -3.8966 3.1444 21 1 4.2486 -4.8273 3.0091 22 6 3.8631 -3.1804 4.3223 23 7 3.2162 -2.0465 4.4870 24 14 4.9775 -3.8252 5.6758 25 1 6.3638 -3.9498 5.1581 26 1 4.9597 -2.8821 6.8228 27 1 4.4944 -5.1564 6.1226 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 5.0984 2.3892 2.2380 32 1 4.9958 4.1239 1.8537 33 1 3.5182 3.2083 2.2377 34 1 5.3104 0.0861 0.0024 35 1 4.1522 -2.1117 0.0114 36 1 0.5325 -2.4232 0.0710 37 1 1.6446 -3.9575 -2.1439 38 1 2.8747 -6.0810 -2.3182 39 1 4.1210 -6.9508 -0.3838 40 1 4.1538 -5.6967 1.7323 41 1 3.3177 -1.5457 5.3115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:30 Heat of formation + Delta-G solvation = -47.518645 kcal Electronic energy + Delta-G solvation = -28450.037804 eV Core-core repulsion = 24422.498481 eV Total energy + Delta-G solvation = -4027.539323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72167 -40.66543 -38.37398 -38.10188 -36.98621 -36.80702 -34.30350 -34.10962 -32.39888 -30.79208 -30.33680 -29.57093 -28.62515 -27.33636 -24.86018 -23.59814 -23.16251 -22.50409 -20.09753 -19.85625 -19.29731 -19.00194 -18.38461 -17.81736 -17.19316 -16.89637 -16.53206 -16.44170 -16.21296 -15.63147 -15.61070 -15.38116 -15.10132 -14.84398 -14.52301 -14.47863 -14.03413 -13.98857 -13.77618 -13.58994 -13.46551 -13.19790 -13.13451 -13.02224 -13.01262 -12.75549 -12.63538 -12.53382 -12.30057 -12.24155 -11.95826 -11.84783 -11.32383 -10.81474 -10.66416 -10.54715 -9.81107 -9.10926 -8.72645 -8.46710 -6.13915 -0.84901 -0.13795 0.22404 0.40811 0.67466 1.33844 1.42196 1.47201 1.85778 2.13331 2.25048 2.47778 2.78595 3.02947 3.05127 3.11462 3.41407 3.56897 3.68419 3.87839 4.05990 4.08612 4.13973 4.24212 4.30195 4.43001 4.46860 4.55980 4.62715 4.72976 4.81965 4.88948 4.92880 4.96615 5.03832 5.08253 5.11568 5.42933 5.53332 5.56486 5.70905 5.94166 5.99853 6.25642 6.60094 6.71163 6.97587 7.74813 8.72837 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004465 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.861477 B = 6269.734019 C = 8051.703377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.030 3.970 3 N -0.376 5.376 4 C -0.511 4.511 5 S 2.533 3.467 6 C -0.628 4.628 7 O -0.965 6.965 8 O -0.960 6.960 9 C -0.054 4.054 10 C -0.165 4.165 11 C 0.228 3.772 12 N -0.650 5.650 13 C 0.033 3.967 14 C -0.068 4.068 15 C -0.184 4.184 16 C -0.063 4.063 17 C -0.244 4.244 18 C 0.117 3.883 19 O -0.203 6.203 20 C -0.413 4.413 21 H 0.098 0.902 22 C -0.011 4.011 23 N -0.905 5.905 24 Si 1.005 2.995 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.260 1.260 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.415 0.585 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 1.080 -6.757 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 N -0.086 5.086 4 C -0.730 4.730 5 S 2.712 3.288 6 C -0.782 4.782 7 O -0.962 6.962 8 O -0.957 6.957 9 C -0.075 4.075 10 C -0.195 4.195 11 C 0.119 3.881 12 N -0.274 5.274 13 C -0.061 4.061 14 C -0.087 4.087 15 C -0.203 4.203 16 C -0.081 4.081 17 C -0.264 4.264 18 C 0.063 3.937 19 O -0.108 6.108 20 C -0.490 4.490 21 H 0.116 0.884 22 C -0.210 4.210 23 N -0.542 5.542 24 Si 0.826 3.174 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.185 1.185 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.141 0.859 36 H 0.255 0.745 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.139 0.861 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.478 2.507 -7.287 7.721 hybrid contribution 0.417 -1.876 1.663 2.541 sum -0.061 0.631 -5.624 5.660 Atomic orbital electron populations 1.20627 0.86103 1.04552 1.03627 1.21466 0.98633 0.86434 1.05511 1.67343 1.07540 1.28333 1.05362 1.32819 0.99049 1.20358 1.20785 1.04423 0.72794 0.72332 0.79301 1.30038 1.13668 1.14111 1.20336 1.93533 1.42323 1.84704 1.75653 1.93502 1.63209 1.63657 1.75380 1.21812 1.01963 0.91581 0.92176 1.21159 0.93268 0.98926 1.06159 1.19045 0.92338 0.87552 0.89200 1.41691 1.08396 1.00319 1.76969 1.16979 1.06188 0.90120 0.92791 1.21240 0.98063 0.94909 0.94509 1.21069 1.01793 0.97434 1.00034 1.21272 0.96453 0.98997 0.91408 1.21289 1.07080 0.97195 1.00830 1.20223 0.95027 0.91713 0.86703 1.83997 1.58670 1.49458 1.18704 1.21687 1.25008 1.07920 0.94345 0.88422 1.26324 0.99051 0.95541 1.00077 1.70181 1.41747 1.14949 1.27358 0.84823 0.77997 0.78309 0.76282 1.18442 1.19934 1.18498 0.90326 0.89074 0.89298 0.83906 0.81570 0.83965 0.82117 0.85860 0.74508 0.83685 0.82853 0.83560 0.86093 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.71 71.24 0.69 -1.78 16 2 C 0.03 1.07 6.80 42.72 0.29 1.36 16 3 N -0.38 -14.11 9.95 -180.85 -1.80 -15.91 16 4 C -0.51 -18.22 6.53 84.70 0.55 -17.66 16 5 S 2.53 72.03 5.86 -56.49 -0.33 71.70 16 6 C -0.63 -12.02 10.80 113.37 1.22 -10.79 16 7 O -0.97 -31.04 17.10 -127.65 -2.18 -33.23 16 8 O -0.96 -32.87 17.73 -127.65 -2.26 -35.13 16 9 C -0.05 -1.99 9.50 22.34 0.21 -1.78 16 10 C -0.17 -6.74 9.08 22.60 0.21 -6.53 16 11 C 0.23 8.81 6.51 38.31 0.25 9.06 16 12 N -0.65 -22.88 5.05 -179.80 -0.91 -23.79 16 13 C 0.03 1.21 4.92 38.31 0.19 1.39 16 14 C -0.07 -1.97 9.96 22.39 0.22 -1.75 16 15 C -0.18 -4.80 10.04 22.28 0.22 -4.58 16 16 C -0.06 -1.85 10.04 22.28 0.22 -1.63 16 17 C -0.24 -9.38 9.16 22.37 0.21 -9.17 16 18 C 0.12 5.10 5.54 22.70 0.13 5.22 16 19 O -0.20 -10.83 9.25 -22.85 -0.21 -11.04 16 20 C -0.41 -22.03 9.49 67.91 0.64 -21.38 16 21 H 0.10 4.81 5.21 -2.91 -0.02 4.79 16 22 C -0.01 -0.56 5.49 84.82 0.47 -0.09 16 23 N -0.91 -51.57 13.67 21.61 0.30 -51.28 16 24 Si 1.01 40.39 29.55 68.60 2.03 42.42 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 27 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 1.92 6.62 -2.39 -0.02 1.90 16 31 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.17 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.16 5.17 7.56 -2.91 -0.02 5.15 16 35 H 0.12 5.30 6.45 -2.91 -0.02 5.29 16 36 H 0.41 12.38 6.91 -92.71 -0.64 11.74 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.12 4.80 5.64 -2.91 -0.02 4.78 16 41 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -77.56 364.61 0.81 -76.75 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.45 Total: 39.62 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 5.73 Total: -60.11 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -2.41 Total: -90.98 kcal Atomic # 8 Polarization: -74.75 SS G_CDS: -4.66 Total: -79.40 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Atomic # 16 Polarization: 72.03 SS G_CDS: -0.33 Total: 71.70 kcal Total: -77.56 0.81 -76.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.229 kcal (2) G-P(sol) polarization free energy of solvation -77.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds