Wall clock time and date at job start Wed Apr 1 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31802 * 119.67106 * 2 1 4 4 C 1.31869 * 121.80040 * 180.02562 * 3 2 1 5 5 S 1.76202 * 119.53361 * 179.97438 * 4 3 2 6 6 C 1.81407 * 104.44665 * 89.99495 * 5 4 3 7 7 O 1.42096 * 104.27543 * 333.92645 * 5 4 3 8 8 O 1.42091 * 104.27534 * 206.06376 * 5 4 3 9 9 C 1.38281 * 120.92915 * 0.24212 * 4 3 2 10 10 C 1.38483 * 119.24537 * 359.52913 * 9 4 3 11 11 C 1.38917 * 119.67128 * 180.02562 * 2 1 3 12 12 N 1.39716 * 120.49380 * 359.97438 * 11 2 1 13 13 C 1.39792 * 119.99741 * 71.09390 * 12 11 2 14 14 C 1.38974 * 120.00570 * 7.54638 * 13 12 11 15 15 C 1.37993 * 119.98982 * 179.76630 * 14 13 12 16 16 C 1.38919 * 120.00565 * 0.50961 * 15 14 13 17 17 O 1.35785 * 119.99169 * 179.72090 * 16 15 14 18 18 C 1.34814 * 116.99833 * 185.33358 * 17 16 15 19 19 H 1.07999 * 120.00037 * 354.88488 * 18 17 16 20 20 C 1.38613 * 120.00081 * 174.88039 * 18 17 16 21 21 N 1.31584 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46957 * 60.00129 * 22 20 18 24 24 H 1.48501 * 109.47362 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47168 * 300.00167 * 22 20 18 26 26 C 1.38913 * 120.01610 * 359.73966 * 16 15 14 27 27 C 1.37993 * 120.00543 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46689 * 90.00193 * 1 2 3 29 29 H 1.08999 * 109.47454 * 210.00239 * 1 2 3 30 30 H 1.08997 * 109.47017 * 330.00782 * 1 2 3 31 31 H 1.08993 * 109.47169 * 299.99586 * 6 5 4 32 32 H 1.08996 * 109.47103 * 60.00034 * 6 5 4 33 33 H 1.08998 * 109.46972 * 180.02562 * 6 5 4 34 34 H 1.08004 * 120.37483 * 179.74972 * 9 4 3 35 35 H 1.08004 * 120.82047 * 180.21460 * 10 9 4 36 36 H 0.96995 * 119.99647 * 251.09351 * 12 11 2 37 37 H 1.07999 * 120.00815 * 0.02562 * 14 13 12 38 38 H 1.07999 * 119.99993 * 180.27466 * 15 14 13 39 39 H 0.97006 * 120.00226 * 179.97438 * 21 20 18 40 40 H 1.07998 * 119.99648 * 179.97438 * 26 16 15 41 41 H 1.08003 * 120.00298 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1595 1.1452 0.0000 4 6 3.4773 1.1942 -0.0005 5 16 4.2883 2.7585 -0.0012 6 6 4.4971 3.1607 1.7554 7 8 3.3512 3.6387 -0.6063 8 8 5.5475 2.5001 -0.6066 9 6 4.2316 0.0353 -0.0061 10 6 3.5880 -1.1909 -0.0012 11 6 2.1947 -1.2070 -0.0005 12 7 1.4997 -2.4190 -0.0005 13 6 0.8112 -2.8299 -1.1457 14 6 0.9448 -2.1159 -2.3306 15 6 0.2689 -2.5246 -3.4621 16 6 -0.5533 -3.6433 -3.4141 17 8 -1.2228 -4.0418 -4.5262 18 6 -2.0878 -5.0662 -4.3856 19 1 -2.1623 -5.5843 -3.4409 20 6 -2.8817 -5.4545 -5.4535 21 7 -2.7907 -4.8235 -6.6046 22 14 -4.0809 -6.8735 -5.2585 23 1 -5.0554 -6.5539 -4.1846 24 1 -4.8061 -7.0879 -6.5365 25 1 -3.3349 -8.1062 -4.8992 26 6 -0.6911 -4.3541 -2.2286 27 6 -0.0117 -3.9488 -1.0980 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 3.5199 3.2093 2.2357 32 1 5.1000 2.3900 2.2354 33 1 4.9965 4.1249 1.8504 34 1 5.3104 0.0858 -0.0105 35 1 4.1521 -2.1120 -0.0019 36 1 1.4948 -2.9753 0.7940 37 1 1.5808 -1.2438 -2.3669 38 1 0.3760 -1.9725 -4.3840 39 1 -3.3460 -5.0955 -7.3520 40 1 -1.3307 -5.2235 -2.1915 41 1 -0.1191 -4.5012 -0.1762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:36 Heat of formation + Delta-G solvation = -16.390958 kcal Electronic energy + Delta-G solvation = -27139.471396 eV Core-core repulsion = 23113.281871 eV Total energy + Delta-G solvation = -4026.189525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85752 -39.09008 -37.37778 -37.30045 -36.20579 -34.94832 -33.34853 -32.26434 -31.13832 -30.22500 -29.92573 -28.27861 -27.14364 -25.34200 -23.81343 -22.61148 -22.12432 -20.99841 -19.42421 -18.15860 -18.01705 -17.49702 -17.27676 -16.84843 -16.57306 -16.27850 -15.74856 -14.74298 -14.52411 -14.49191 -14.30969 -13.93679 -13.67115 -13.62120 -13.60611 -13.54830 -13.14876 -12.84262 -12.69112 -12.57840 -12.37800 -12.34675 -12.24417 -12.05442 -11.71322 -11.59172 -11.45037 -11.27771 -11.04490 -10.76937 -10.47341 -10.30382 -10.03703 -9.51962 -9.37370 -9.16774 -8.60475 -8.34707 -6.70463 -6.43109 -4.01148 -0.32462 0.33338 0.90178 2.04377 2.32603 2.45537 3.06451 3.12490 3.13642 3.16699 3.36125 3.62958 3.67929 3.96984 4.16313 4.35755 4.43255 4.47817 4.60121 4.77771 4.85416 5.08754 5.19859 5.21406 5.26326 5.33873 5.46947 5.57436 5.59746 5.65622 5.78914 5.91785 6.05428 6.08059 6.23430 6.36937 6.69062 6.74285 6.94161 7.17881 7.24984 7.39724 7.45001 7.72268 7.86053 8.00272 9.02027 9.73073 10.74935 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.025617 B = 0.002116 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.777723 B =13229.047289 C =13602.206476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.106 3.894 3 N -0.384 5.384 4 C -0.446 4.446 5 S 2.511 3.489 6 C -0.647 4.647 7 O -0.916 6.916 8 O -0.934 6.934 9 C -0.082 4.082 10 C -0.107 4.107 11 C 0.179 3.821 12 N -0.705 5.705 13 C 0.099 3.901 14 C -0.125 4.125 15 C -0.154 4.154 16 C 0.127 3.873 17 O -0.181 6.181 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.197 4.197 27 C -0.121 4.121 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.406 0.594 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.270 0.730 40 H 0.131 0.869 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.286 10.035 20.129 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.039 4.039 3 N -0.095 5.095 4 C -0.665 4.665 5 S 2.687 3.313 6 C -0.798 4.798 7 O -0.913 6.913 8 O -0.930 6.930 9 C -0.104 4.104 10 C -0.136 4.136 11 C 0.081 3.919 12 N -0.338 5.338 13 C 0.005 3.995 14 C -0.147 4.147 15 C -0.174 4.174 16 C 0.073 3.927 17 O -0.085 6.085 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.217 4.217 27 C -0.142 4.142 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.243 0.757 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.964 11.421 18.821 25.549 hybrid contribution -0.311 -2.465 1.046 2.696 sum 12.653 8.955 19.867 25.199 Atomic orbital electron populations 1.20711 0.87474 1.03405 1.04238 1.22062 0.98013 0.87642 0.96191 1.67585 1.06629 1.28727 1.06558 1.32991 0.99486 1.20072 1.13975 1.05250 0.74299 0.73889 0.77881 1.30191 1.12366 1.12253 1.24942 1.93608 1.62171 1.62772 1.72722 1.93610 1.41615 1.84494 1.73306 1.21853 1.01653 0.91883 0.95041 1.22052 0.94061 0.98914 0.98564 1.18554 0.90847 0.87615 0.94882 1.41558 1.57630 1.19983 1.14661 1.17238 0.98851 0.97546 0.85902 1.20186 1.02547 1.00377 0.91578 1.20026 1.01271 0.97617 0.98456 1.19285 0.93179 0.92918 0.87292 1.83993 1.49235 1.47575 1.27654 1.21211 1.16836 1.08924 0.99774 0.89292 1.25260 0.97759 0.98943 0.94619 1.70039 1.38488 1.39595 1.01769 0.85804 0.79670 0.80032 0.78032 1.19566 1.20319 1.19592 1.20988 1.04847 1.03169 0.92689 1.20220 0.98664 0.97067 0.98274 0.89516 0.90102 0.90486 0.84679 0.85073 0.84758 0.82866 0.83561 0.75671 0.87636 0.86237 0.92017 0.85145 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.00 36.01 0.32 -0.91 16 2 C 0.11 1.37 6.14 -82.35 -0.51 0.86 16 3 N -0.38 -5.03 9.95 -8.51 -0.08 -5.12 16 4 C -0.45 -4.88 6.53 -17.52 -0.11 -4.99 16 5 S 2.51 22.41 5.86 -107.50 -0.63 21.78 16 6 C -0.65 -2.54 10.80 101.05 1.09 -1.45 16 7 O -0.92 -12.04 17.73 -57.54 -1.02 -13.06 16 8 O -0.93 -10.31 17.09 -57.54 -0.98 -11.30 16 9 C -0.08 -0.79 9.50 -39.48 -0.37 -1.17 16 10 C -0.11 -1.10 10.11 -39.08 -0.40 -1.49 16 11 C 0.18 2.14 4.70 -83.61 -0.39 1.75 16 12 N -0.70 -8.36 4.60 -8.27 -0.04 -8.40 16 13 C 0.10 1.54 5.80 -83.68 -0.49 1.06 16 14 C -0.13 -2.22 8.42 -39.40 -0.33 -2.55 16 15 C -0.15 -3.20 9.98 -39.42 -0.39 -3.59 16 16 C 0.13 2.96 6.65 -39.08 -0.26 2.70 16 17 O -0.18 -5.07 9.75 -0.01 0.00 -5.07 16 18 C -0.39 -10.73 9.48 30.87 0.29 -10.44 16 19 H 0.09 2.23 5.19 -52.49 -0.27 1.95 16 20 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 21 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 22 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.20 -4.01 9.16 -39.42 -0.36 -4.37 16 27 C -0.12 -1.99 9.89 -39.40 -0.39 -2.38 16 28 H 0.09 1.19 7.79 -51.93 -0.40 0.78 16 29 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 34 H 0.15 1.05 7.55 -52.48 -0.40 0.66 16 35 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.41 3.79 8.84 -40.82 -0.36 3.43 16 37 H 0.11 1.79 6.69 -52.49 -0.35 1.44 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 2.66 5.63 -52.49 -0.30 2.36 16 41 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -36.35 365.26 -8.46 -44.81 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.56 Total: 6.12 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -2.39 Total: -26.02 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.64 Total: -38.03 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -2.00 Total: -29.42 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 22.41 SS G_CDS: -0.63 Total: 21.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.35 -8.46 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.423 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds